Bacterial Endophytes Research Articles

Exploring Plant–Bacterial Symbiosis for Eco-Friendly Agriculture and Enhanced Resilience

This review explores the intricate relationship between plants and bacterial endophytes, revealing their multifaceted roles in promoting plant growth, resilience, and defense mechanisms. By selectively shaping their microbiome, plants harness diverse endophytic bacterial strains to enhance nutrient absorption, regulate hormones, mitigate damage, and contribute to overall plant health. The review underscores the potential of bacterial endophytes in self-sustaining agricultural systems, offering solutions to reduce reliance on fertilizers and pesticides. Additionally, the review highlights the importance of endophytes in enhancing plant tolerance to various environmental stresses, such as drought, salinity, extreme temperatures, and heavy metal toxicity. The review emphasizes the significance of understanding and harnessing the mutualistic relationship between plants and endophytes for maximizing agricultural yields and promoting sustainable farming practices.

Metabolomic profiling and 16 S rRNA metabarcoding of endophytes of two Aloe species revealed diverse metabolites

Aloe species are often used interchangeably for medicinal and cosmeceutical applications, presenting a challenge to the biological efficacy consistency of some herbal preparations. Sustainable production of high-quality commonly used medicinal plants remains a limitation for commercialisation. Thus, this study investigated the potential for plant substitution by examining bacterial endophytes capable of producing similar host plant secondary metabolites. The metabolite profiles and endophytic bacterial communities of endangered Aloe lettyae were compared with those of Aloe longibracteata using nuclear magnetic resonance spectroscopy and 16 S rRNA gene sequencing. Only 15 metabolites were significantly different between A. lettyae and A. longibracteata based on metabolite concentrations. However, both plants’ functionality and potential application remain comparable. Phytohormones, including indole-3-acetate and 5-hydroxyindole-3-acetate, were more concentrated in A. lettyae than A. longibracteata. Metabolites such as tyrosine, allantoin, and myo-inositol, with human health benefits, were annotated in both species. Aloe lettyae harboured a phylogenetically diverse bacteria community compared to A. longibracteata, with a higher richness of bacterial species, indicating a likelihood of diverse metabolic capabilities among the bacteria. Dominant endophytes, including Bacillus, Comamonas, and Pseudomonas, possess enzymes contributing to various metabolic pathways. The enzymes have the potential to impact the synthesis, or breakdown of plant metabolites, consequently influencing the overall metabolic composition of the host plant. Therefore, this study supports the interchangeability of A. lettyae and A. longibracteata due to their ability to produce similar metabolites, and although the Aloe species exhibit phylogenetically diverse endophytic communities, the feasibility of utilizing their endophytes as producers of secondary metabolites remains viable.Graphical abstract

Comparative study of endophytic bacterial strains from non-host crops for enhancing plant growth and managing early blight in tomato

Bacillus pseudomycoides, Paenibacillus polymyxa, and B. velezensis are potent bacterial endophytes, which typically exhibit host-specific interactions. However, comparative studies of these endophytes in vitro and in planta in non-host crops are lacking. Therefore, in this study, we evaluated the potential of endophytes B. pseudomycoides strain HP3d, P. polymyxa strain PGSS1, B. velezensis strain A6, and P42, isolated from various crop ecosystems in promoting plant growth and inducing systemic resistance against early blight disease in tomato. In vitro, endophytes exhibited 44.44–55.56% and 37.50–87.50% inhibition of Alternaria solani in dual culture and volatilome bioassay, respectively. In the glasshouse, individual and combined applications via seed treatment (ST), seedling dip (SD), and foliar spray (FS) significantly enhanced shoot growth (23.63–57.61%), root growth (43.27–118.23%), number of leaves (77.52–93.58%), number of shoots (33.42–45.28%) and root dry matter (42.17–43.86%), reducing early blight (PDI) by 70.95–76.12% compared to uninoculated control. Enzymatic activities, including such as polyphenol oxidase (30–40 fold), peroxidase (65.00–75.00 fold), superoxide dismutase (34.20–37.20 fold) and phenylalanine ammonia-lyase (44.44–45.56 fold) were elevated post-inoculation in endophytes treated tomato plants challenged with A. solani compared to control treated only with A. solani and declined after the fifth day. The total chlorophyll content declined from the 0th to the 10th day, but endophyte treated plants exhibited lesser reductions (2.03–2.09) than uninoculated control. Field trials confirmed the glasshouse findings, showing reduced early blight and improved growth parameters in tomato where the ST + SD + FS combination emerged as the most effective treatment for all endophytes showing 1.06–1.88 fold increase in fruit yield per plant and 28.92–32.52% decrease in PDI compared to untreated control. Thus, the study highlights the broad-spectrum potential of these strains in promoting plant growth and controlling early blight in tomato, demonstrating non-host specificity. These endophytes offer eco-friendly alternatives to chemical pesticides, supporting sustainable agriculture. Their success in field trials suggests the potential for commercialization and large-scale use across diverse crops and pave the way for further interdisciplinary research to optimize their application in integrated pest management strategies.

Spatiotemporal diversity of bacterial endophyte microbiome of mandarin (Citrus reticulata) in the northern Persian Gulf and its HCN production and N2 fixation.

Endophytes are symbionts that live in healthy plants and potentially improve the health of plant holobionts. Here, we investigated the bacterial endophyte community of Citrus reticulata grown in the northern Persian Gulf. Bacteria were isolated seasonally from healthy trees (root, stem, bark, trunk, leaf, and crown tissues) in four regions of Hormozgan province (i.e., Ahmadi, Siyahoo, Sikhoran, Roudan), a subtropical hot region in Iran. A total of 742 strains from 17 taxa, 3 phyla, and 5 orders were found, most of which belonged to Actinobacteria (Actinobacteriales) as the dominant group, followed by Firmicutes (Bacillales), Proteobacteria (Sphingomonadales, Rhizobiales), and Cyanobacteria (Synechoccales). The genera included Altererythrobacter, Arthrobacter, Bacillus, Cellulosimicrobium, Curtobacterium, Kocuria, Kytococcus, Methylopila, Mycobacterium, Nocardioides, Okiabacterium, Paracraurococcus, and Psychrobacillus. The most frequently occurring species included Psychrobacillus psychrodurans, Kytococcus schroetri, and Bacillus cereus. In addition, the overall colonization frequency and variability of endophytes were higher on the trunks. The leaves showed the lowest species variability in all sampling periods. The frequency of endophyte colonization was also higher in summer. The Shannon-Wiener (H') and Simpson indices varied with all factors, i.e., region, season, and tissue type, with the maximum in Roudan. Furthermore, 52.9% of the strains were capable of nitrogen fixation, and 70% produced antagonistic hydrogen cyanide (HCN). Thus, C. reticulata harbors a variety of bioactive bacterial endophytes that could be beneficial for host fitness in such harsh environments.

Unveiling Bacillus rugosus CRI: A multi-stress tolerant endophyte revolutionizing rice resilience

The application of endophytes to mitigate stress in plants, particularly drought and salinity stress, has gained considerable attention, yet their role in rice remains underexplored. This study aimed to investigate the isolation and characterization of multi-stress-tolerant endophytic isolates with multiple plant growth-promoting attributes, including biocontrol potential against plant pathogens, from surface-sterilized leaf, stem, and root samples of various rice cultivars in Kerala. A total of 20 bacterial endophytes were isolated from rice plants and assessed for their plant growth-promoting (PGP) capabilities, biocontrol potential, and resilience to drought and salinity stress. Of these, 7 endophytic isolates exhibited notable PGP traits, and 3 demonstrated antifungal activity against Rhizoctonia solani and Fusarium oxysporum. Notably, only 3 endophytic isolates showed significant tolerance to drought conditions (−1.0 MPa) and salinity (150 mM), alongside strong growth-promoting abilities. The selected isolates significantly increased seed germination and seedling vigour (p ≤ 0.05), highlighting their effectiveness. Among these, the isolate CRI, identified as Bacillus rugosus through morphological, biochemical, and molecular (16S rRNA) analysis, stood out for its remarkable performance. Under stress conditions, rice seedlings treated with the multi-stress-tolerant CRI showed significant improved biomass, resilience, and enhanced biochemical processes, including better photosynthetic pigment levels and maintained membrane integrity. Field emission scanning electron microscopy (FE-SEM) confirmed the presence of these bacteria within the rice roots, underscoring their potential as a novel approach for enhancing stress tolerance and promoting rice growth. This study represents the first discovery of Bacillus rugosus as a potent multi-stress-tolerant endophyte, with dual benefits of promoting plant growth and exhibiting biocontrol activity. These findings pave the way for innovative strategies aimed at enhancing crop resilience and productivity, particularly in the face of increasing abiotic stressors in agricultural systems.

Bacterial endophyte Pseudomonas mosselii PR5 improves growth, nutrient accumulation, and yield of rice (Oryza sativa L.) through various application methods

BackgroundPseudomonas spp. have drawn considerable attention due to their rhizospheric abundance and exceptional plant growth-promoting attributes. However, more research is needed on the optimal application methods of Pseudomonas mosselii for rice growth, nutrient accumulation, and yield improvement. This research explored the application of the endophytic bacterium P. mosselii PR5 on rice cultivar BRRI dhan29 with four treatments: control, seedling priming, root drenching, and bacterial cell-free culture (CFC) foliar application.ResultsPR5 led to better rice growth, improved nutrient acquisition, and higher yields compared to the control, regardless of the application method used. The highest results in fresh weight of root (146.93 g/pot), shoot (758.98 g/pot), and flag leaf (7.88 g/pot), dry weight of root (42.16 g/pot), shoot (97.32 g/pot), and flag leaf (2.69 g/pot), and grains/panicle (224.67), were obtained from seedling priming treatment, whereas root drenching resulted in maximum plant height (105.67 cm), root length (49.0 cm), tillers/pot (23.7), and panicles/pot (17.67). In all three application methods, rice grain yield per pot was higher in PR5 inoculated treatments, compared to the control. The amount of P, Mg and Zn in the shoot and N, P, Ca, Mg and Si content in the flag leaf was significantly increased along with effective suppression of naturally occurring blast disease in bacterial CFC foliar application, validated by multivariate analysis.ConclusionOur results indicated that rice seedlings priming with PR5 improved rice growth, yield and nutrient uptake, whereas CFC foliar application significantly increased the concentration of most nutrients in the rice plant and suppressed the naturally occurring rice blast disease. This research highlights the significant potential of P. mosselii PR5 in enhancing rice growth, yield, and nutrient uptake, particularly through seedling priming and CFC foliar application methods.

Exploring nonanol from Bacillus velezensis (YEBBR6) for root-knot nematode management in bananas: Integrating experimental and computational approaches

Nematode infestations pose a severe threat to global banana production, leading to substantial yield losses and economic damage. Among these, the root-knot nematode Meloidogyne incognita is particularly detrimental, causing root galls that severely impair water and nutrient uptake, leading to stunted growth, reduced fruit quality, and significant economic losses for farmers. In the face of increasing agricultural challenges, bacterial endophytes have emerged as essential tools for sustainable agriculture, offering ecofriendly solutions to enhance plant health and manage pests. The present study aims to identify and characterise biomolecules from bacterial endophyte Bacillus velezensis (YEBBR6) with potential nematicidal properties against root-knot nematode Meloidogyne incognita infecting banana. The analysis of volatile and non-volatile organic compounds (VOCs/NVOCs) from the inhibition zone during the ditrophic interaction between B. velezensis (YEBBR6) and Fusarium oxysporum f.sp. cubense (Foc) revealed the presence of several distinctive biomolecules with antifungal and antimicrobial properties. These compounds included linoelaedic acid, nonanol, acetylvaleryl, 5–hydroxyl methyl furfural, clindamycin, allobarbital, 3-thiazolidine carboxamide, azulene, aminomorpholine, procyclidine, campholic acid, 3 amino-4 hydroxy phenyl sulfone, 3–deoxy mannoic lactone, hexadecanoic acid, oleic acid, and dihydroacridine. The in-silico analysis revealed that nonanol, exhibited strong binding efficacy against M. incognita protein targets, including cytochrome C oxidase subunit 1, calreticulin, neuropeptide G-protein coupled receptor, chorismate mutase 1, venom allergen-like proteins, and β-1,4-endoglucanase. Notably, nonanol proved more effective than the commercially used nematicide carbofuran 3G. Molecular dynamics studies further supported the potential of nonanol, and its nematicidal properties were validated through in vitro and pot culture studies. Moreover, nonanol was found to induce the expression of defense-related genes, such as MAPK10, WRKY22, ascorbate peroxidase, catalase, and NADPH oxidase, in banana seedlings, thus enhancing the plant's immune response. These findings highlight the potential of nonanol, derived from B. velezensis (YEBBR6), as a potent and environmentally friendly alternative for controlling nematode infestations in banana cultivation.

Isolation and Inhibitory Activity Testing of Alpha-Glucosidase Enzyme from Endophytic Bacteria in Kumis Kucing (Orthosiphon aristatus (Blume) Miq.) Leaves

Orthosiphon aristatus (Blume) Miq., commonly known as kumis kucing, is frequently used in traditional Indonesian medicine to treat diabetes, hypertension, rheumatism, gout, and as a diuretic. However, large-scale production of medicinal products from natural sources requires significant raw material and land, creating a need for alternative methods. This study explores the potential of isolating endophytic bacteria from kumis kucing leaves to serve as α-glucosidase enzyme inhibitors, offering a more sustainable approach. Eight bacterial endophytes were isolated and tested using bioautography assays and IC50 measurements to assess their inhibitory activity. Four isolates—KK 1, KK 3, KK 4, and KK 5—demonstrated significant α-glucosidase inhibition, with IC50 values of 41.35 µg/mL, 57.04 µg/mL, 56.70 µg/mL, and 164.16 µg/mL, respectively. Molecular testing identified KK 1 as Priestia aryabhattai, while KK 3 and KK 5 were identified as Priestia megaterium. These findings suggest that endophytic bacteria isolated from Orthosiphon aristatus leaves have the potential to be developed as natural sources of α-glucosidase inhibitors, which are beneficial for diabetes management.

Continental sampling reveals core bacterial and environmentally driven fungal leaf endophytes in Heuchera.

Endophytic plant-microbe interactions range from mutualistic relationships that confer important ecological and agricultural traits to neutral or quasi-parasitic relationships. In contrast to root-associated endophytes, the role of environmental and host-related factors in the acquisition of leaf endophyte communities at broad spatial and phylogenetic scales remains sparsely studied. We assessed endofoliar diversity to test the hypothesis that membership in these microbial communities is driven primarily by abiotic environment and host phylogeny. We used a broad geographic coverage of North America in the genus Heuchera L. (Saxifragaceae), representing 32 species and varieties across 161 populations. Bacterial and fungal communities were characterized using 16S and ITS amplicon sequencing, respectively, and standard diversity metrics were calculated. We assembled environmental predictors for microbial diversity at collection sites, including latitude, elevation, temperature, precipitation, and soil parameters. Assembly patterns differed between bacterial and fungal endophytes. Host phylogeny was significantly associated with bacteria, while geographic distance was the best predictor of fungal community composition. Species richness and phylogenetic diversity were consistent across sites and species, with only fungi showing a response to aridity and precipitation for some metrics. Unlike what has been observed with root-associated microbial communities, in this system microbes show no relationship with pH or other soil factors. Overall, this work improves our understanding of the large-scale patterns of diversity and community composition in leaf endophytes and highlights the relative significance of environmental and host-related factors in driving different microbial communities within the leaf microbiome.

Biopriming of Solanum lycopersicum seeds with novel root endophytic bacterial consortium retrieved from halotolerant Sundarban mangroves to sustain growth and yield with salt resilience

Mangroves are often found in coastal areas and tropical wetlands that can withstand high salinity. We hypothesized that endophytes that are harbouring in the roots of mangrove plants may improve the innate immunity of host plants to survive naturally in saline environment. Retrieving these endophytes and sequential characterization may function as a novel bio-effector for non-host food crops as well. We focused on the integrated approach towards formulating a novel bacterial consortium. Thirty-one bacterial endophytes isolated from the roots of mangrove plants were screened for plant growth promoting potential by inoculating our model crop (Tomato). Seven most promising isolates impacting plant growth were identified. In-vitro plant growth promoting characters were also analysed. The root colonization by the isolates was confirmed by Scanning Electron Microscopy (SEM). Among the screened isolates, four of them were found to be compatible with each other when grown together and were selected to formulate a novel biostimulant consortia. The consortia treated Tomato plants exhibited superior phenological characters. In the pot experiment, plant height of the treated plants was about ≈43 cm while the non-treated plants under salt stress could grow only up to a height of ≈26 cm. Similarly, a total fruit yield of ≈6.8 kg was observed in case of treated plants under salt stress whereas the non-treated plants under salt stress could only produce ≈4.7 kg of fruit. This study demonstrated that the beneficial bacteria inhabiting in mangrove roots can increase the potential of conferring salt tolerance to non-host crops, thereby contributing to sustainable agriculture.

Exploring the Potential of Bacterial Endophytes in Plant Disease Management.

Endophytic bacteria live in the internal tissues of plants, forming symbiotic, mutualistic, commensalistic and trophobiotic relationships. Some are spread via seeds after sprouting from the rhizosphere or phyllosphere. These bacteria capable of promoting plant growth and impart biotic stress by synthesing plant growth hormones, ACC deaminase, organic acids and siderophore. Endophytes aid in phytoremediation by removing soil contaminants and boosting soil fertility via phosphate solubilization and nitrogen fixation. The endophytic microbes are becoming increasingly popular in biotechnological applications which supports sustainable growth of non-food crops for biomass and biofuel. They offer valuable natural materials which is used in medicine, agriculture and industry. Bacterial endophytes are endowed with the enormous potential in the biological treatment of plant pathogens and considered as the superior alternative to synthetic fungicides. The review emphasizes benefits of bacterial endophytes in promoting plant growth and prospects of agricultural applications viz., increasing crop yield under biotic stress condition and their mode of action towards plant diseases. It also summarises the diverse and vital role of endophytes in agroecosystems as well as insights for sustainable agriculture and crop resilience.

Natural Defense: The Inhibitory Effects of Endophytic Bacillus and Xylaria sp. against Rice Pathogens

Aim: Endophytes living inside the plant tissues are known to play a crucial role in the physiology and developmental functioning of host plants. Rice is the major food crop that feeds half of the world population. But pest and diseases lead to drastic yield reduction in rice. Sustainable and eco-friendly disease management strategies are urgently needed to reduce the reliance on chemical pesticides and mitigate the environmental impact of intensive agriculture.The aim of the study was the selection of natural suppressors of the brown spot and sheath blight diseases in rice. In this study, three bacterial endophytes viz., Bacillus subtilis isolate PAL 11, B. altitudins isolate TSL-4 and B. altitudinis isolate KAM-11 and one endophytic fungal isolate Xylaria sp. isolate KTD-2 were tested for their potential to inhibit Bipolaris oryzae and Rhizoctonia solani under in vitro conditions. Methodology: In vitro evaluation of endophytes against two major rice pathogens viz., Rhizoctonia solani and Bipolaris oryzae causing sheath blight and brown leaf spot respectively were tested by dual culture technique. Results: All the tested bacterial and fungal endophytes significantly inhibited both the pathogens under in vitro conditions. Among the bacterial endophytes, B. subtilis isolate PAL-11 exhibited highest inhibition of both the pathogens. The mycelial inhibition of B. oryzae was 56.04 and 74.48 per cent respectively at 5 and 8 days after dual culturing whereas the inhibition of R. solani was 80.31 and 80.22 per cent respectively at 3 and 5 days after dual culturing. The fungal endophyte Xylaria sp. isolate KTD-2 exhibited 63.2 and 67.95 per cent inhibition of mycelial growth of B. oryzae at 5 and 8 days respectively after the pathogen inoculation. The mycelial growth of R. solani was also significantly inhibited (54.95 %) by the fungal endophyte at 5 days after pathogen inoculation. Conclusion: This research highlights the potential role of endophytes in sustainable agriculture and suggests that integrating beneficial microbes into rice disease management strategies could help enhance plant health, increase crop yields, and contribute to global food security.

Complete genome sequence of Microbacterium sp. che218, an endophyte isolated from Vitis vinifera cv. Chardonnay shoot xylem.

Microbacterium species are bacterial endophytes that live inside plants. We report the complete genome sequence of Microbacterium sp. che218, an endophyte isolated from the shoot xylem of the wine grape Vitis vinifera cv. Chardonnay.

Bacterial seed endophytes promote barley growth and inhibits Fusarium graminearum in vitro

ObjectivesSeeds host microbes that function in plant growth and phytopathogen resistance. The aim of the work was to investigate total bacterial community in malting barley seeds and whether their bacterial seed endophytes have dual functional roles in plant growth-promotion and inhibition of Fusarium graminearum, the causative agent of Fusarium head blight (FHB) in barley. We used culture dependent and culture independent methods.ResultsPhylogenetic classification of seed endophytic bacteria based on sequencing data identified B. subtilis, B. licheniformis and B. pumilis as predominant subgroups. Location driven divergence in bacterial endophytic communities was evident based on a clear separation of the samples from Crookston and other location samples. The bio-primed seeds using one hundred and seventy bacterial isolates showed that 3.5% (6/170) of the bacterial isolates conferred greater than 10% increase in both root length (RL) and shoot length (SL), while 19.4% (33/170) and 26.5% (45/170) showed RL and SL specific growth effects, respectively, relative to controls. Among the six bacterial isolates that increased RL and SL, five (#29, #63, #109, #124 and #126) also significantly inhibit the growth of F. graminearum based on in vitro assays. This study identified novel seed bacterial endophytes that could be further exploited for promoting growth during seedling establishment and as biocontrol for combating the devastating scab disease.

Characterization of differences in seed endophytic microbiome in conventional and organic rice by amplicon-based sequencing and culturing methods.

In this paper, we studied the differences in the endophytic microbial composition of rice seeds grown in conventional and organic farming systems. Our results demonstrate a greater bacterial diversity in conventional farming, while organic farming showcases a higher fungal diversity. Additionally, our research reveals the ability of seed bacterial endophytes to inhibit the growth of three fungal pathogens responsible for causing seedling blight in rice. This study provides valuable insights into the potential use of beneficial seed microbial endophytes for developing a novel microbiome-based strategy in the management of rice diseases. Such an approach has the potential to enhance overall plant health and improve crop productivity.

Exploring the impact of plant genotype and fungicide treatment on endophytic communities in tomato stems.

This study examines how plant genotype can influence the microbiome by comparing six tomato genotypes (Solanum lycopersicum) based on their traditional vs. commercial backgrounds. Using Illumina-based sequencing of the V6-V8 regions of 16S and ITS2 rRNA genes, we analyzed and compared the endophytic bacterial and fungal communities in stems to understand how microbiota can differ and be altered in plant genotypes and the relation to human manipulation. Our results reflect that traditional genotypes harbor significantly more exclusive microbial taxa and a broader phylogenetic background than the commercial ones. Traditional genotypes were significantly richer in Eurotiomycetes and Sordariomycetes fungi, while Lasiosphaeriaceae was more prevalent in commercial genotypes. TH-30 exhibited the highest bacterial abundance, significantly more than commercial genotypes, particularly in Actinomycetia, Bacteroidia, and Gammaproteobacteria. Additionally, traditional genotypes had higher bacterial diversity, notably in orders like Cytophagales, Xanthomonadales, and Burkholderiales. Moreover, we performed an evaluation of the impact of a systemic fungicide (tebuconazole-dichlofluanide) to simulate a common agronomic practice and determined that a single fungicide treatment altered the stem endophytic microbiota. Control plants had a higher prevalence of fungal orders Pleosporales, Helotiales, and Glomerellales, while treated plants were dominated by Sordariomycetes and Laboulbeniomycetes. Fungal community diversity significantly decreased, but no significant impact was observed on bacterial diversity. Our study provides evidence that the background of the tomato variety impacts the fungal and bacterial stem endophytes. Furthermore, these findings suggest the potential benefits of using of traditional genotypes as a source of novel beneficial microbiota that may prove highly valuable in unpredicted challenges and the advancement in sustainable agriculture.

Mitigation of salt stress in Sorghum bicolor L. by the halotolerant endophyte Pseudomonas stutzeri ISE12.

Increasing soil salinity, exacerbated by climate change, threatens seed germination and crop growth, causing significant agricultural losses. Using bioinoculants based on halotolerant plant growth-promoting endophytes (PGPEs) in modern agriculture is the most promising and sustainable method for supporting plant growth under salt-stress conditions. Our study evaluated the efficacy of Pseudomonas stutzeri ISE12, an endophyte derived from the extreme halophyte Salicornia europaea, in enhancing the salinity tolerance of sorghum (Sorghum bicolor L.). We hypothesized that P. stutzeri ISE12 would improve sorghum salt tolerance to salinity, with the extent of the increase in tolerance depending on the genotype's sensitivity to salt stress. Experiments were conducted for two sorghum genotypes differing in salinity tolerance (Pegah - salt tolerant, and Payam - salt sensitive), which were inoculated with a selected bacterium at different salinity concentrations (0, 100, 150, and 200 mM NaCl). For germination, we measured germination percentage and index, mean germination time, vigor, shoot and root length of seedlings, and fresh and dry weight. In pot experiments, we assessed the number of leaves, leaf area, specific leaf area, leaf weight ratio, relative root weight, plantlet shoot and root length, fresh and dry weight, proline and hydrogen peroxide concentrations, and peroxidase enzyme activity. Our study demonstrated that inoculation significantly enhanced germination and growth for both sorghum genotypes. The salinity-sensitive genotype (Payam) responded better to bacterial inoculation during germination and early seedling growth stages, showing approximately 1.4 to 1.8 times greater improvement than the salinity-tolerant genotype (Pegah). Payam also displayed better performance at the plantlet growth stage, between 1.1 and 2.6 times higher than Pegah. Furthermore, inoculation significantly reduced hydrogen peroxide, peroxidase activity, and proline levels in both sorghum genotypes. These reductions were notably more pronounced in Payam, with up to 1.5, 1.3, and 1.5 times greater reductions than in Pegah. These results highlight the efficacy of P. stutzeri ISE12 in alleviating oxidative stress and reducing energy expenditure on defense mechanisms in sorghum, particularly benefiting salt-sensitive genotypes. Our findings highlight the potential of the bacterial endophyte P. stutzeri ISE12 as a valuable bioinoculant to promote sorghum growth under saline conditions.

Insights on mining the pangenome of Sphingobacterium thalpophilum NMS02 S296 from the resistant banana cultivar Pisang lilin confirms the antifungal action against Fusarium oxysporum f. sp. cubense.

Fusarium wilt, caused by Fusarium oxysporum f. sp. cubense (Foc), poses a significant global threat to banana cultivation. Conventional methods of disease management are increasingly challenged, thus making it necessary to explore alternative strategies. Bacterial endophytes, particularly from resistant genotypes, are gaining attention as potential biocontrol agents. Sphingobacterium thalpophilum, isolated from the resistant banana cultivar Pisang lilin (JALHSB010000001-JALHSB010000029), presents an intriguing prospect for combating Fusarium wilt. However, its underlying biocontrol mechanisms remain poorly understood. This study aimed to elucidate the antifungal efficacy of S. thalpophilum NMS02 S296 against Foc and explore its biocontrol mechanisms at the genomic level. Whole genome sequencing of S. thalpophilum NMS02 S296 was conducted using next-generation sequencing technologies and bioinformatics analyses were performed to identify genes associated with antifungal properties. In vitro assays were used to assess the inhibitory effects of the bacterial isolate on the mycelial growth of Foc. To explore the biomolecules responsible for the observed antagonistic activity, metabolites diffused into the agar at the zone of inhibition between Foc S16 and S. thalpophilum NMS02 S296 were extracted and identified. Whole genome sequencing revealed an array of genes encoding antifungal enzymes and secondary metabolites in S. thalpophilum NMS02 S296. In vitro experiments demonstrated significant inhibition of Foc mycelial growth by the bacterial endophyte. Comparative genomic analysis highlighted unique genomic features in S. thalpophilum linked to its biocontrol potential, setting it apart from other bacterial species. The study underscores the remarkable antifungal efficacy of S. thalpophilum NMS02 S296 against Fusarium wilt. The genetic basis for its biocontrol potential was elucidated through whole genome sequencing, shedding light on the mechanisms behind its antifungal activity. This study advanced our understanding of bacterial endophytes as biocontrol agents and offers a promising avenue for plant growth promotion towards sustainable strategies to mitigate Fusarium wilt in banana cultivation.

Antifungal activity of grape associated bacterial endophytes against pathogenic fungi

Antifungal activity of grape associated bacterial endophytes against pathogenic fungi

The effects of Pinus sylvestris L. geographical origin on the community and co-occurrence of fungal and bacterial endophytes in a common garden experiment.

This study advances our understanding of how plant ecotype and seasonal changes influence root endophytic communities in Scots pine (Pinus sylvestris). By examining trees from various origins grown in a common garden, it highlights the role of tree origin and season in shaping fungal and bacterial community and co-occurrence networks. Importantly, this research demonstrates that tree origin impacts the composition and interaction networks of root endophytes and depends on the season. The study's findings suggest that root biochemical traits and climatic conditions (e.g., temperature, precipitation) associated with tree origin are crucial in determining the assembly of endophytic communities. This understanding could lead to innovative strategies for enhancing plant health and adaptability across different environments, contributing to forestry and conservation efforts. The research underscores the complexity of plant-microbe interactions and the need for a comprehensive approach to studying them, highlighting the interplay between tree origin and microbial ecology in forest ecosystems.