The development of soft computing methods has had a significant influence on the subject of autonomous intelligent agriculture. This paper offers a system for autonomous greenhouse navigation that employs a fuzzy control algorithm and a deep learning-based disease classification model for tomato plants, identifying illnesses using photos of tomato leaves. The primary novelty in this study is the introduction of an upgraded Deep Convolutional Generative Adversarial Network (DCGAN) that creates augmented pictures of disease tomato leaves from original genuine samples, considerably enhancing the training dataset. To find the optimum training model, four deep learning networks (VGG19, Inception-v3, DenseNet-201, and ResNet-152) were carefully compared on a dataset of nine tomato leaf disease classes. These models have validation accuracy of 92.32%, 90.83%, 96.61%, and 97.07%, respectively, when using the original PlantVillage dataset. The system then uses an enhanced dataset with ResNet-152 network design to achieve a high accuracy of 99.69%, as compared to the original dataset with ResNet-152’s accuracy of 97.07%. This improvement indicates the use of the proposed DCGAN in improving the performance of the deep learning model for greenhouse plant monitoring and disease detection. Furthermore, the proposed approach may have a broader use in various agricultural scenarios, potentially altering the field of autonomous intelligent agriculture.