Automatic Spike Detection Research Articles

Deep learning based automatic detection and dipole estimation of epileptic discharges in MEG: a multi-center study.

Magnetoencephalography (MEG) provides crucial information in diagnosing focal epilepsy. However, dipole estimation, a commonly used analysis method for MEG, can be time-consuming since it necessitates neurophysiologists to manually identify epileptic spikes. To reduce this burden, we developed the automatic detection of spikes using deep learning in single center. In this study, we performed a multi-center study using six MEG centers to improve the performance of the automated detection of neuromagnetically recorded epileptic spikes, which we previously developed using deep learning. Data from four centers were used for training and evaluation (internal data), and the remaining two centers were used for evaluation only (external data). We used a five-fold subject-wise cross-validation technique to train and evaluate the models. A comparison showed that the multi-center model outperformed the single-center model in terms of performance. The multi-center model achieved an average ROC-AUC of 0.9929 and 0.9426 for the internal and external data, respectively. The median distance between the neurophysiologist-analyzed and automatically analyzed dipoles was 4.36 and 7.23mm for the multi-center model for internal and external data, respectively, indicating accurate detection of epileptic spikes. By training data from multiple centers, automated analysis can improve spike detection and reduce the analysis workload for neurophysiologists. This study suggests that the multi-center model has the potential to detect spikes within 1cm of a neurophysiologist's analysis. This multi-center model can significantly reduce the number of hours required by neurophysiologists to detect spikes.

SynchroLINNce: toolbox for Neural Synchronization and Desynchronization Assessment in Epilepsy Animal Models

Epilepsy is a worldwide public health issue, given its biological, social, and economic impacts. Considering several open questions about synchronization and desynchronization mechanisms underlying epileptic phenomena, the development of algorithms and computational toolboxes for such analysis is highly relevant to their research. Moreover, given the recent developments of neurotechnology for epilepsy, it is essential to understand that proposals like computational tools may provide consistent data for closed-loop control systems, necessary in neuromodulation treatment alternatives, and for real-time monitoring systems to predict the occurrence of epileptic seizures. In the present work, SynchroLINNce, a freely distributable MATLAB toolbox designed to be used by epilepsy neuroscientists, including software-untrained), is proposed. Among its features, several functionalities such as recording visualization, digital filtering, and correlation analysis, as well as more specific methodologies, such as mechanisms for the automatic detection of epileptiform spikes, morphology analysis of these spikes, and their coincidence between channels are presented.

Identification of spikes in continuous ground-based in situ time series of CO2, CH4 and CO: an extended experiment within the European ICOS Atmosphere network

Abstract. The identification of spikes (i.e., short and high variability in the measured signals due to very local emissions occurring in the proximity of a measurement site) is of interest when using continuous measurements of atmospheric greenhouse gases (GHGs) in different applications like the determination of long-term trends and/or spatial gradients, inversion experiments devoted to the top-down quantification of GHG surface–atmosphere fluxes, the characterization of local emissions, or the quality control of GHG measurements. In this work, we analyzed the results provided by two automatic spike identification methods (i.e., the standard deviation of the background (SD) and the robust extraction of baseline signal (REBS)) for a 2-year dataset of 1 min in situ observations of CO2, CH4 and CO at 10 different atmospheric sites spanning different environmental conditions (remote, continental, urban). The sensitivity of the spike detection frequency and its impact on the averaged mole fractions on method parameters was investigated. Results for both methods were compared and evaluated against manual identification by the site principal investigators (PIs). The study showed that, for CO2 and CH4, REBS identified a larger number of spikes than SD and it was less “site-sensitive” than SD. This led to a larger impact of REBS on the time-averaged values of the observed mole fractions for CO2 and CH4. Further, it could be shown that it is challenging to identify one common algorithm/configuration for all the considered sites: method-dependent and setting-dependent differences in the spike detection were observed as a function of the sites, case studies and considered atmospheric species. Neither SD nor REBS appeared to provide a perfect identification of the spike events. The REBS tendency to over-detect the spike occurrence shows limitations when adopting REBS as an operational method to perform automatic spike detection. REBS should be used only for specific sites, mostly affected by frequent very nearby local emissions. SD appeared to be more selective in identifying spike events, and the temporal variabilities in CO2, CH4 and CO were more consistent with those of the original datasets. Further activities are needed for better consolidating the fitness for purpose of the two proposed methods and to compare them with other spike detection techniques.

Comparison of Automated Spike Detection Software in Detecting Epileptiform Abnormalities on Scalp-EEG of Genetic Generalized Epilepsy Patients.

Despite availability of commercial EEG software for automated epileptiform detection, validation on real-world EEG datasets is lacking. Performance evaluation of two software packages on a large EEG dataset of patients with genetic generalized epilepsy was performed. Three epileptologists labelled IEDs manually of EEGs from three centres. All Interictal epileptiform discharge (IED) markings predicted by two commercial software (Encevis 1.11 and Persyst 14) were reviewed individually to assess for suspicious missed markings and were integrated into the reference standard if overlooked during manual annotation during a second phase. Sensitivity, precision, specificity, and F1-score were used to assess the performance of the software packages against the adjusted reference standard. One hundred and twenty-five routine scalp EEG recordings from different subjects were included (total recording time, 310.7 hours). The total epileptiform discharge reference count was 5,907 (including spikes and fragments). Encevis demonstrated a mean sensitivity for detection of IEDs of 0.46 (SD 0.32), mean precision of 0.37 (SD 0.31), and mean F1-score of 0.43 (SD 0.23). Using the default medium setting, the sensitivity of Persyst was 0.67 (SD 0.31), with a precision of 0.49 (SD 0.33) and F1-score of 0.51 (SD 0.25). Mean specificity representing non-IED window identification and classification was 0.973 (SD 0.08) for Encevis and 0.968 (SD 0.07) for Persyst. Automated software shows a high degree of specificity for detection of nonepileptiform background. Sensitivity and precision for IED detection is lower, but may be acceptable for initial screening in the clinical and research setting. Clinical caution and continuous expert human oversight are recommended with all EEG recordings before a diagnostic interpretation is provided based on the output of the software.

Feasibility of high-density electric source imaging in the presurgical workflow: Effect of number of spikes and automated spike detection.

Presurgical high-density electric source imaging (hdESI) of interictal epileptic discharges (IEDs) is only used by few epilepsy centers. One obstacle is the time-consuming workflow both for recording as well as for visual review. Therefore, we analyzed the effect of (a) an automated IED detection and (b) the number of IEDs on the accuracy of hdESI and time-effectiveness. In 22 patients with pharmacoresistant focal epilepsy receiving epilepsy surgery (Engel 1) we retrospectively detected IEDs both visually and semi-automatically using the EEG analysis software Persyst in 256-channel EEGs. The amount of IEDs, the Euclidean distance between hdESI maximum and resection zone, and the operator time were compared. Additionally, we evaluated the intra-individual effect of IED quantity on the distance between hdESI maximum of all IEDs and hdESI maximum when only a reduced amount of IEDs were included. There was no significant difference in the number of IEDs between visually versus semi-automatically marked IEDs (74 ± 56 IEDs/patient vs 116 ± 115 IEDs/patient). The detection method of the IEDs had no significant effect on the mean distances between resection zone and hdESI maximum (visual: 26.07 ± 31.12 mm vs semi-automated: 33.6 ± 34.75 mm). However, the mean time needed to review the full datasets semi-automatically was shorter by 275 ± 46 min (305 ± 72 min vs 30 ± 26 min, P < 0.001). The distance between hdESI of the full versus reduced amount of IEDs of the same patient was smaller than 1 cm when at least a mean of 33 IEDs were analyzed. There was a significantly shorter intraindividual distance between resection zone and hdESI maximum when 30 IEDs were analyzed as compared to the analysis of only 10 IEDs (P < 0.001). Semi-automatized processing and limiting the amount of IEDs analyzed (~30-40 IEDs per cluster) appear to be time-saving clinical tools to increase the practicability of hdESI in the presurgical work-up.

A deep learning network based on CNN and sliding window LSTM for spike sorting

Spike sorting plays an essential role to obtain electrophysiological activity of single neuron in the fields of neural signal decoding. With the development of electrode array, large numbers of spikes are recorded simultaneously, which rises the need for accurate automatic and generalization algorithms. Hence, this paper proposes a spike sorting model with convolutional neural network (CNN) and a spike classification model with combination of CNN and Long-Short Term Memory (LSTM). The recall rate of our detector could reach 94.40% in low noise level dataset. Although the recall declined with the increasing noise level, our model still presented higher feasibility and better robustness than other models. In addition, the results of our classification model presented an accuracy of greater than 99% in simulated data and an average accuracy of about 95% in experimental data, suggesting our classifier outperforms the current “WMsorting” and other deep learning models. Moreover, the performance of our whole algorithm was evaluated through simulated data and the results shows that the accuracy of spike sorting reached about 97%. It is noteworthy to say that, this proposed algorithm could be used to achieve accurate and robust automated spike detection and spike classification.

A Subpopulation of Spikes Predicts Successful Epilepsy Surgery Outcome.

Epileptic spikes are the traditional interictal electroencephalographic (EEG) biomarker for epilepsy. Given their low specificity for identifying the epileptogenic zone (EZ), they are given only moderate attention in presurgical evaluation. This study aims to demonstrate that it is possible to identify specific spike features in intracranial EEG that optimally define the EZ and predict surgical outcome. We analyzed spike features on stereo-EEG segments from 83 operated patients from 2 epilepsy centers (37 Engel IA) in wakefulness, non-rapid eye movement sleep, and rapid eye movement sleep. After automated spike detection, we investigated 135 spike features based on rate, morphology, propagation, and energy to determine the best feature or feature combination to discriminate the EZ in seizure-free and non-seizure-free patients by applying 4-fold cross-validation. The rate of spikes with preceding gamma activity in wakefulness performed better for surgical outcome classification (4-fold area under receiver operating characteristics curve [AUC] = 0.755 ± 0.07) than the seizure onset zone, the current gold standard (AUC=0.563 ± 0.05, p= 0.015) and the ripple rate, an emerging seizure-independent biomarker (AUC=0.537 ± 0.07, p= 0.006). Channels with a spike-gamma rate exceeding 1.9/min had an 80% probability of being in the EZ. Combining features did not improve the results. Resection of brain regions with high spike-gamma rates in wakefulness is associated with a high probability of achieving seizure freedom. This rate could be applied to determine the minimal number of spiking channels requiring resection. In addition to quantitative analysis, this feature is easily accessible to visual analysis, which could aid clinicians during presurgical evaluation. ANN NEUROL 2023;93:522-535.

Implanting intracranial electrodes does not affect spikes or network connectivity in nearby or connected brain regions.

To determine the effect of implanting electrodes on electrographic features of nearby and connected brain regions in patients with drug-resistant epilepsy, we analyzed intracranial EEG recordings from 10 patients with drug-resistant epilepsy who underwent implant revision (placement of additional electrodes) during their hospitalization. We performed automated spike detection and measured EEG functional networks. We analyzed the original electrodes that remained in place throughout the full EEG recording, and we measured the change in spike rates and network connectivity in these original electrodes in response to implanting new electrodes. There was no change in overall spike rate pre- to post-implant revision (t(9) = 0.1, p = 0.95). The peri-revision change in the distribution of spike rate and connectivity across electrodes was no greater than chance (Monte Carlo method, spikes: p = 0.40, connectivity: p = 0.42). Electrodes closer to or more functionally connected to the revision site had no greater change in spike rate or connectivity than more distant or less connected electrodes. Changes in electrographic features surrounding electrode implantation are no greater than baseline fluctuations occurring throughout the intracranial recording. These findings argue against an implant effect on spikes or network connectivity in nearby or connected brain regions.

Fast parametric curve matching (FPCM) for automatic spike detection

Objective. Epilepsy is a widely spread neurological disease, whose treatment often requires resection of the pathological cortical tissue. Interictal spike analysis observed in the non-invasively collected EEG or MEG data offers an attractive way to localize epileptogenic cortical structures for surgery planning purposes. Interictal spike detection in lengthy multichannel data is a daunting task that is still often performed manually. This frequently limits such an analysis to a small portion of the data which renders the appropriate risks of missing the potentially epileptogenic region. While a plethora of automatic spike detection techniques have been developed each with its own assumptions and limitations, none of them is ideal and the best results are achieved when the output of several automatic spike detectors are combined. This is especially true in the low signal-to-noise ratio conditions. To this end we propose a novel biomimetic approach for automatic spike detection based on a constrained mixed spline machinery that we dub as fast parametric curve matching (FPCM). Approach. Using the peak-wave shape parametrization, the constrained parametric morphological model is constructed and convolved with the observed multichannel data to efficiently determine mixed spline parameters corresponding to each time-point in the dataset. Then the logical predicates that directly map to verbalized text-book like descriptions of the expected interictal event morphology allow us to accomplish the spike detection task. Main results. The results of simulations mimicking typical low SNR scenarios show the robustness and high receiver operating characteristic AUC values of the FPCM method as compared to the spike detection performed using more conventional approaches such as wavelet decomposition, template matching or simple amplitude thresholding. Applied to the real MEG and EEG data from the human patients and to rat ECoG data, the FPCM technique demonstrates reliable detection of the interictal events and localization of epileptogenic zones concordant with independent conclusions made by the epileptologist. Significance. Since the FPCM is computationally light, tolerant to high amplitude artifacts and flexible to accommodate verbalized descriptions of an arbitrary target morphology, it is likely to complement the existing arsenal of means for analysis of noisy interictal datasets.

Review on Epileptic Seizure Prediction: Machine Learning and Deep Learning Approaches.

Epileptic seizures occur due to brain abnormalities that can indirectly affect patient's health. It occurs abruptly without any symptoms and thus increases the mortality rate of humans. Almost 1% of world's population suffers from epileptic seizures. Prediction of seizures before the beginning of onset is beneficial for preventing seizures by medication. Nowadays, modern computational tools, machine learning, and deep learning methods have been used to predict seizures using EEG. However, EEG signals may get corrupted with background noise, and artifacts such as eye blinks and physical movements of muscles may lead to “pops” in the signal, resulting in electrical interference, which is cumbersome to detect through visual inspection for longer duration recordings. These limitations in automatic detection of interictal spikes and epileptic seizures are preferred, which is an essential tool for examining and scrutinizing the EEG recording more precisely. These restrictions bring our attention to present a review of automated schemes that will help neurologists categorize epileptic and nonepileptic signals. While preparing this review paper, it is observed that feature selection and classification are the main challenges in epilepsy prediction algorithms. This paper presents various techniques depending on various features and classifiers over the last few years. The methods presented will give a detailed understanding and ideas about seizure prediction and future research directions.

Automated spike detection: Which software package?

PurposeWe assessed three commercial automated spike detection software packages (Persyst, Encevis and BESA) to see which had the best performance. MethodsThirty prolonged EEG records from people aged at least 16 years were collected and 30-minute representative epochs were selected. Interictal epileptiform discharges (IEDs) were marked by three human experts and by all three software packages. For each 30-minutes selection and for each 10-second epoch we measured whether or not IEDs had occurred. We defined the gold standard as the combined detections of the experts. Kappa scores, sensitivity and specificity were estimated for each software package. ResultsSensitivity for Persyst in the default setting was 95% for 30-minute selections and 82% for 10-second epochs. Sensitivity for Encevis was 86% (30-minute selections) and 61% (10-second epochs). The specificity for both packages was 88% for 30-minute selections and 96%-99% for the 10-second epochs. Interrater agreement between Persyst and Encevis and the experts was similar than between experts (0.67–0.83 versus 0.63–0.67). Sensitivity for BESA was 40% and specificity 100%. Interrater agreement (0.25) was low. ConclusionsIED detection by the Persyst automated software is better than the Encevis and BESA packages, and similar to human review, when reviewing 30-minute selections and 10-second epochs. This findings may help prospective users choose a software package.

Automatic detection of epileptiform potentials and seizures in the EEG

Automatic computer-based algorithms for the detection of epileptiform potentials and seizure patterns on EEG facilitate a time-saving, objective method of quantitative EEG interpretation which is available 7/24. For the automatic detection of interictal epileptiform potentials sensitivities range from 65 to 99% with false positive detections of 0,09 to 13,4 per minute. Recent studies documented equal or even better performance of automatic spike detection programs compared with experienced human EEG readers. The seizure detection problem-one of the major problems in clinical epileptology-consists of the fact that the majority of focal onset seizures with impaired awareness and of seizures arising out of sleep occur unnoticed by patients and their caregivers. Automatic seizure detection systems could facilitate objective seizure documentation and thus help to solve the seizure detection problem. Furthermore, seizure detection systems may help to prevent seizure-related injuries and sudden unexpected death in epilepsy (SUDEP), and could be an integral part of novel, seizure-triggered on-demand therapies in epilepsy. During long-term video-EEG monitoring seizure detection systems could improve patient safety, provide a time-saving objective and reproducible analysis of seizure patterns and facilitate automatic computer-based patient testing during seizures. Sensitivities of seizure detection systems range from 75 to 90% with extratemporal seizures being more difficult to detect than temporal seizures. The false positive alarm rate ranges from 0,1 to 5 per 24 hours. Finally, machine learning algorithms, especially deep learning approaches, open a new highly promising era in automatic spike and seizure detection.

Spike Detection Technique Based on Spike Augmentation with Low Computational and Hardware Complexity.

In this paper, a method for the detection and subsequently extraction of neural spikes in an intra-cortically recorded neural signal is proposed. This method distinguishes spikes from the background noise based on the natural difference between their time-domain amplitude variation patterns. According to this difference, a spike mask is generated, which takes on large values over the course of spikes, and much smaller values for the background noise. The "high" part of this mask is designed to be wide enough to contain a complete spike. By multiplying the input neural signal with the spike mask, spikes are amplified with a large factor while the background noise is not. The result is a spike-augmented signal with significantly larger signal-to-noise ratio, on which spike detection is performed much more easily and accurately. According to this detection mechanism, spikes of the original neural signal are extracted.Clinical Relevance-This paper presents an automatic spike detection technique, dedicated to brain-implantable neural recording devices. Such devices are developed for clinical applications such as the treatment of epilepsy, neuro-prostheses, and brain-machine interfacing for therapeutic purposes.

Automated Spike Detection in Diverse European Wheat Plants Using Textural Features and the Frangi Filter in 2D Greenhouse Images.

Spike is one of the crop yield organs in wheat plants. Determination of the phenological stages, including heading time point (HTP), and area of spike from non-invasive phenotyping images provides the necessary information for the inference of growth-related traits. The algorithm previously developed by Qiongyan et al. for spike detection in 2-D images turns out to be less accurate when applied to the European cultivars that produce many more leaves. Therefore, we here present an improved and extended method where (i) wavelet amplitude is used as an input to the Laws texture energy-based neural network instead of original grayscale images and (ii) non-spike structures (e.g., leaves) are subsequently suppressed by combining the result of the neural network prediction with a Frangi-filtered image. Using this two-step approach, a 98.6% overall accuracy of neural network segmentation based on direct comparison with ground-truth data could be achieved. Moreover, the comparative error rate in spike HTP detection and growth correlation among the ground truth, the algorithm developed by Qiongyan et al., and the proposed algorithm are discussed in this paper. The proposed algorithm was also capable of significantly reducing the error rate of the HTP detection by 75% and improving the accuracy of spike area estimation by 50% in comparison with the Qionagyan et al. method. With these algorithmic improvements, HTP detection on a diverse set of 369 plants was performed in a high-throughput manner. This analysis demonstrated that the HTP of 104 plants (comprises of 57 genotypes) with lower biomass and tillering range (e.g., earlier-heading types) were correctly determined. However, fine-tuning or extension of the developed method is required for high biomass plants where spike emerges within green bushes. In conclusion, our proposed method allows significantly more reliable results for HTP detection and spike growth analysis to be achieved in application to European cultivars with earlier-heading types.

Developing multi-component dictionary-based sparse representation for automatic detection of epileptic EEG spikes

Epilepsy is a common brain disease which affect approximately one percent of people worldwide and its onset can be diagnosed by detecting electroencephalography (EEG) spike artificially. In this research, we propose a modified sparse representation algorithm for automated epileptic spikes detection, motivated by the finding that EEG tends to be sparse. Using Gaussian function and its derivations, a redundant and multi-component dictionary is firstly constructed and followed by achieving the sparse approximation of EEG based on orthogonal matching pursuit (OMP) algorithm. At last, the morphological structure of the reconstructed EEG is represented quantitatively so that the spikes are detected and located. Experimental results show that the proposed scheme is qualified to detect epileptic spikes automatically employing four EEG subsets containing 90 epochs of EEG data with a satisfactory accuracy of not less than 97.33%. Comparing with other techniques, our approach reaches higher accuracy and is more adequate for epileptic spikes detection with lower computational complexity. As a whole, our scheme provides a new tool for the diagnosis of epileptic seizures.

New Feature Selection Method for Multi-channel EEG Epileptic Spike Detection System

Epilepsy is one of the most common and severe brain disorders. Electroencephalogram (EEG) is widely used in epilepsy diagnosis and treatment, with it the epileptic spikes can be observed. Tensor decomposition-based feature extraction has been proposed to facilitate automatic detection of EEG epileptic spikes. However, tensor decomposition may still result in a large number of features which are considered negligible in determining expected output performance. We proposed a new feature selection method that combines the Fisher score and p-value feature selection methods to rank the features by using the longest common sequences (LCS) to separate epileptic and non-epileptic spikes. The proposed method significantly outperformed several state-of-the-art feature selection methods.

Determining the Spike-Wave Index Using Automated Detection Software.

The spike-wave index (SWI) is a key feature in the diagnosis of electrical status epilepticus during slow-wave sleep. Estimating the SWI manually is time-consuming and is subject to interrater and intrarater variability. Use of automated detection software would save time. Thereby, this software will consistently detect a certain EEG phenomenon as epileptiform and is not influenced by human factors. To determine noninferiority in calculating the SWI, we compared the performance of a commercially available spike detection algorithm (P13 software, Persyst Development Corporation, San Diego, CA) with human expert consensus. The authors identified all prolonged EEG recordings for the diagnosis or follow-up of electrical status epilepticus during slow-wave sleep carried out from January to December 2018 at an epilepsy tertiary referral center. The SWI during the first 10 minutes of sleep was estimated by consensus of two human experts. This was compared with the SWI calculated by the automated spike detection algorithm using the three available sensitivity settings: "low," "medium," and "high." In the software, these sensitivity settings are denoted as perception values. Forty-eight EEG recordings from 44 individuals were analyzed. The SWIs estimated by human experts did not differ from the SWIs calculated by the automated spike detection algorithm in the "low" perception mode (P = 0.67). The SWIs calculated in the "medium" and "high" perception settings were, however, significantly higher than the human expert estimated SWIs (both P < 0.001). Automated spike detection (P13) is a useful tool in determining SWI, especially when using the "low" sensitivity setting. Using such automated detection tools may save time, especially when reviewing larger epochs.

SpikeDeeptector: a deep-learning based method for detection of neural spiking activity

Objective. In electrophysiology, microelectrodes are the primary source for recording neural data (single unit activity). These microelectrodes can be implanted individually or in the form of arrays containing dozens to hundreds of channels. Recordings of some channels contain neural activity, which are often contaminated with noise. Another fraction of channels does not record any neural data, but only noise. By noise, we mean physiological activities unrelated to spiking, including technical artifacts and neural activities of neurons that are too far away from the electrode to be usefully processed. For further analysis, an automatic identification and continuous tracking of channels containing neural data is of great significance for many applications, e.g. automated selection of neural channels during online and offline spike sorting. Automated spike detection and sorting is also critical for online decoding in brain–computer interface (BCI) applications, in which only simple threshold crossing events are often considered for feature extraction. To our knowledge, there is no method that can universally and automatically identify channels containing neural data. In this study, we aim to identify and track channels containing neural data from implanted electrodes, automatically and more importantly universally. By universally, we mean across different recording technologies, different subjects and different brain areas. Approach. We propose a novel algorithm based on a new way of feature vector extraction and a deep learning method, which we call SpikeDeeptector. SpikeDeeptector considers a batch of waveforms to construct a single feature vector and enables contextual learning. The feature vectors are then fed to a deep learning method, which learns contextualized, temporal and spatial patterns, and classifies them as channels containing neural spike data or only noise. Main results. We trained the model of SpikeDeeptector on data recorded from a single tetraplegic patient with two Utah arrays implanted in different areas of the brain. The trained model was then evaluated on data collected from six epileptic patients implanted with depth electrodes, unseen data from the tetraplegic patient and data from another tetraplegic patient implanted with two Utah arrays. The cumulative evaluation accuracy was 97.20% on 1.56 million hand labeled test inputs. Significance. The results demonstrate that SpikeDeeptector generalizes not only to the new data, but also to different brain areas, subjects, and electrode types not used for training. Clinical trial registration number. The clinical trial registration number for patients implanted with the Utah array is NCT 01849822. For the epilepsy patients, approval from the local ethics committee at the Ruhr-University Bochum, Germany, was obtained prior to implantation.

Automatic spike detection in beam loss signals for LHC collimator alignment

Abstract A collimation system is installed in the Large Hadron Collider to protect its super-conducting magnets and sensitive equipment from potentially dangerous beam halo particles. The collimator settings are determined following an alignment procedure, whereby collimator jaws are moved towards the beam until a suitable spike pattern, consisting of a sharp rise followed by a slow decay, is observed in nearby beam loss monitors. This indicates the collimator jaw is aligned to the beam. The current method for aligning collimators is semi-automated whereby an operator must continuously observe the loss signals to determine whether the jaw has touched the beam, or if some other perturbation in the beam caused the losses. The human element in this procedure can result in errors and is a major bottleneck in automating and speeding up the alignment. This paper proposes to automate the human task of spike detection by using machine learning. A data set was formed from previous alignment campaigns, from which fourteen manually engineered features were extracted and six machine learning models were trained, analysed in-depth and thoroughly tested. The suitability of using machine learning in LHC operation was confirmed during collimator alignments performed in 2018, which significantly benefited from the models trained through machine learning in this study.

Detection of Spikes With Defined Parameters in the ECoG Signal

Patients undergoing presurgical evaluation for resective epilepsy surgery require the localization of the epileptogenic zone. The detection and analysis of interictal and ictal epileptiform spikes are of major importance for identifying this area. The “irritative zone” of the cortex with interictal spikes is usually revealed intraoperatively during acute electrocorticography (ECoG). Since ECoG recordings cannot be completely visually reviewed in a reasonable amount of time, computer algorithms for the automatic detection of seizures and spikes were developed. We proposed the spike detection algorithm based on the definition of the physical properties of the sought spikes (duration and amplitude). The parameters are easily interpreted by neurophysiologists. The detection sensitivity was 93%, and the precision was 99%. In addition, based on the number of spikes detected on individual electrodes, it is possible to draw the “frequency of spike occurrence” map. The algorithm proved to be so effective in analyzing ECoG records, as it is allowed to be used in practice.