Introduction: Microscopic colitis (MC) and primary sclerosing cholangitis (PSC) are immunological disorders. The association of ulcerative colitis (UC) with PSC is well-known. Patients with PSC without UC could have MC. We studied clinical features and outcomes in patients with MC and PSC. Methods: Patients with MC and PSC were retrospectively identified from January 1st, 1980 to December 31st, 2020. Details including demographics, mode of diagnoses, treatment and response to MC therapy, presence of UC or Crohn’s disease, complications and risk of neoplasia were gathered. Results: Twelve patients (8 male; median age 54.4 years [range 22.6-75.3]; 7 with lymphocytic colitis, 5 with collagenous colitis) were found. Nine (75%) were diagnosed with MC after PSC (median 2.5 weeks [range 0-1221.5]). Six of 12 (50%) were symptomatic for MC with diarrhea, and 6 (50%) were incidentally found to have MC during screening for IBD or dysplasia. One patient had an adenomatous polyp, no patient had flat dysplasia or cancer, and none underwent colon resection. Six (50%) who were asymptomatic for MC required no treatment, treatment data was missing for 1 symptomatic patient, the remaining 5 symptomatic patients were treated with budesonide (3), prednisone (1), and bismuth subsalicylate (1). All experienced complete resolution of diarrhea. One had pre-existing UC that transformed to MC after 8 years and another transformed from chronic colitis to MC after 1 year. Diagnosis of PSC was made by ERCP in 6 patients (50%), liver biopsy in 4 (33.3%) and MRCP in 3 (25%). Cholangitis developed in 5 patients (41.6%), strictures requiring stenting in 7 (58.3%), cirrhosis in 4 (33.3%) and cholangiocarcinoma in 2 patients (16.6%). No patient required a liver transplant, 1 (8.3%) died one year after PSC diagnosis due to cholangiocarcinoma. CONCLUSION: Concomitant diagnosis of MC and PSC was uncommon. Most patients were male, which is typical for PSC but atypical for MC. Microscopic colitis was often found incidentally by colonoscopy done to rule out IBD. Half the patients did not have symptoms of MC and required no treatment. Patients that were treated for MC had a complete resolution of symptoms. Primary sclerosing cholangitis tended to have complications. The association of PSC with UC is well-known. When managing patients with PSC and unexplained diarrhea or patients with MC and abnormal liver chemistries, MC-PSC should be considered.