Assessment Of Macroinvertebrate Communities Research Articles

Comparative assessment of macroinvertebrate communities within three Afromontane headwater streams influenced by different land use patterns

Headwater streams in Afromontane ecoregions harbour locally adapted aquatic communities. However, across many regions in Africa, these ecosystems and their unique aquatic biodiversity have been severely impacted by unsustainable land use practices. We tested the hypothesis that land use disturbances were the primary drivers of community dynamics by comparing spatial and temporal dynamics together with trait-environment relationships of macroinvertebrate communities in three headwater streams influenced by different land use practices. The three headwater streams were distinguished based on high conductivity, total dissolved solids and alkaline pH in the agriculture-disturbed stream, and low temperature in a stream whose riparian zone was invaded by non-native vegetation compared to a near-natural stream. Macroinvertebrate taxonomic diversity was, nevertheless, comparable among these three streams. Constrained canonical ordination revealed that seasonality was a major driver of macroinvertebrate dynamics that was reflected mostly by the abundances of six macroinvertebrate taxa (Baetis, Dicentroptelum, Afronurus, Tricorythus, Simulium and Cheumatopsyche), whereas land use contributed a small but significant difference. Trait-environment relationships reflected seasonal changes that included the importance of benthic substratum in winter, the occurrence of collector-gatherer invertebrates in spring and aerial breathing traits in summer. Land use-related traits were, nevertheless, reflected by gill respiration and grazer feeding traits represented by Afronurus in the near-natural stream, predator traits represented by Aeshna and Lestes in the invaded stream, and aerial respiration represented by Enithares, Orectogyrus and Rhagovelia in the agriculture-disturbed stream. Our results suggest that environmental variability associated with seasonality probably played a deterministic role within which land use disturbances operated. Overall, our study suggest that importance of using multiple metrics to unpack the patterns associated with land use disturbances in headwater streams.

Macroinvertebrate community assessment and biomonitoring of European water bodies. Is a multimarker approach necessary?

The present work, included in the European Project BIOWAT, aims to develop and validate the use of genomic tools or metabarcoding for its utilization as a routine method for river biomonitoring in different European Biogeographical regions. The project included sampling points in three biogeographic regions, Mediterranean (Spain), Continental (Germany) and Boreal (Finland). The current development of the study was designed using mock communities obtained from the three mentioned areas and different aspects were tested: DNA extraction methods, selection of informative region (16S vs COI), design and performance of primers, bioinformatic pipeline, etc…Although the use of COI has become very popular, and its barcode database is more complete, the use of mitochondrial 16S as taxonomic marker can provide similar or even better results when accompanied by a rich local barcode database Elbrecht 2016. In this presentation, the results and conclusions obtained for the biomonitoring of nine rivers (3 for each of the biogeographic regions) using 16S as DNA marker and a local barcode database are shown. The results of ecological status assignment using 16S marker were promising, showing a good correlation between morphological determinations and metabarcoding data for most of the studied rivers. However, in some cases, the metabarcoding data showed a jump in the ecological status class (to better or worst status), highlighting the existence of some problems related with primers (for some taxonomic groups) or missing taxa in the barcode database that still need to be solved prior the utilization of this method on a routine basis.Additionally, for the studied Mediterranean rivers, a complementary analysis using COI as marker was made, using the universal primers developed by Elbrecht and Leese 2017. In general, this marker showed better results in the identification for some taxa, whereas other included in the mock communities were not identified showing important problems that could be related with primers (sometimes not well covering characteristic taxa present in other biogeographic regions) or the lack of a complete COI macroinvertebrate barcode databases in the Iberian Peninsula for the case of Spain Múrria 2020.Our results show that both markers have the potential to produce a good identification of benthic macroinvertebrates, showing an acceptable correlation between morphology and metabarcoding approaches. However, none of them is able to amplify all of the present groups, so the parallel use of both markers (mitochondrial 16S and COI) in a multimarker approach could solve some of the problems, giving a more complete profile of the macroinvertebrate community. This approach has already been proposed and can lead the future of macroinvertebrate community assessment Ficetola 2020, Martins 2020.

Modelling technical and biological biases in macroinvertebrate community assessment from bulk preservative using multiple metabarcoding markers.

DNA metabarcoding from the ethanol used to store macroinvertebrate bulk samples is a convenient methodological option in molecular biodiversity assessment and biomonitoring of aquatic ecosystems, as it preserves specimens and reduces problems associated with sample sorting. However, this method may be affected by errors and biases, which need to be thoroughly quantified before it can be mainstreamed into biomonitoring programmes. Here, we used 80 unsorted macroinvertebrate samples collected in Portugal under a Water Framework Directive monitoring programme, to compare community diversity and taxonomic composition metrics estimated through morphotaxonomy versus metabarcoding from storage ethanol using three markers (COI‐M19BR2, 16S‐Inse01 and 18S‐Euka02) and a multimarker approach. A preliminary in silico analysis showed that the three markers were adequate for the target taxa, with detection failures related primarily to the lack of adequate barcodes in public databases. Metabarcoding of ethanol samples retrieved far less taxa per site (alpha diversity) than morphotaxonomy, albeit with smaller differences for COI‐M19BR2 and the multimarker approach, while estimates of taxa turnover (beta diversity) among sites were similar across methods. Using generalized linear mixed models, we found that after controlling for differences in read coverage across samples, the probability of detection of a taxon was positively related to its proportional abundance, and negatively so to the presence of heavily sclerotized exoskeleton (e.g., Coleoptera). Overall, using our experimental protocol with different template dilutions, the COI marker showed the best performance, but we recommend the use of a multimarker approach to detect a wider range of taxa in freshwater macroinvertebrate samples. Further methodological development and optimization efforts are needed to reduce biases associated with body armouring and rarity in some macroinvertebrate taxa.

Advancing the use of molecular methods for routine freshwater macroinvertebrate biomonitoring – the need for calibration experiments

Over the last decade, steady advancements have been made in the use of DNA-based methods for detection of species in a wide range of ecosystems. This progress has culminated in molecular monitoring methods being employed for the detection of several species for enforceable management purposes of endangered, invasive, and illegally harvested species worldwide. However, the routine application of DNA-based methods to monitor whole communities (typically a metabarcoding approach) in order to assess the status of ecosystems continues to be limited. In aquatic ecosystems, the limited use is particularly true for macroinvertebrate communities. As part of the DNAqua-Net consortium, a structured discussion was initiated with the aim to identify potential molecular methods for freshwater macroinvertebrate community assessment and identify important knowledge gaps for their routine application. We focus on three complementary DNA sources that can be metabarcoded: 1) DNA from homogenised samples (bulk DNA), 2) DNA extracted from sample preservative (fixative DNA), and 3) environmental DNA (eDNA) from water or sediment. We provide a brief overview of metabarcoding macroinvertebrate communities from each DNA source and identify challenges for their application to routine monitoring. To advance the utilisation of DNA-based monitoring for macroinvertebrates, we propose an experimental design template for a series of methodological calibration tests. The template compares sources of DNA with the goal of identifying the effects of molecular processing steps on precision and accuracy. Furthermore, the same samples will be morphologically analysed, which will enable the benchmarking of molecular to traditional processing approaches. In doing so we hope to highlight pathways for the development of DNA-based methods for the monitoring of freshwater macroinvertebrates.

The problem of agricultural ‘diffuse’ pollution: Getting to the point

Despite introduction of legislation such as the EU Nitrates and Water Framework Directives (Directives 91/676/EEC and 2000/60/EC respectively), agricultural practices are often still regarded as a major factor in poor water quality across many EU member states. Elevated inputs of nutrients, organic matter and agro-chemicals to receiving waters from agricultural lands in particular are now widely recognised as potentially major causes of deteriorating water quality. Such inputs may emanate from diffuse sources such as agricultural fields, and small point- or intermediate-sources, including farmyards and farm trackways. However, while inputs from these latter intermediate sources may be substantial, their overall contribution to catchment-wide water quality at high temporal or spatial resolution is still largely unknown. In this study, we surveyed water chemistry throughout the multiple natural and artificial watercourses within a single drainage network at high spatial resolution in a predominantly dairy farming area in Southern Ireland. We found that most headwaters at the time of study were impacted by organic inputs via drainage ditches emanating from the vicinity of farmyards. These farmyard drains were found to have elevated concentrations of ammonium, phosphorus, potassium, suspended sediment and biochemical oxygen demand above background levels in the study catchment. Concomitant assessment of macro-invertebrate communities at study sites indicated that the ecological quality of headwaters was also impaired by these inputs. The individual and aggregate contributions of farmyard drains to water quality within a single catchment, when mapped at high spatial resolution, indicates that they constitute a major contribution to catchment scale ‘diffuse’ agricultural inputs. However, our data also suggest that engineering farmyard drains to maximise their retention and attenuation function may prove to be a cost-effective means of mitigating the effects of point source farmyard inputs.

Derivation of sediment Hg quality standards based on ecological assessment in river basins

The Environmental Quality Standards (EQS) directive was an important improvement of long-term water quality monitoring at the European level, leading to the use of sediments and biota as relevant matrices for assessing priority substances under the European Water Framework directive. Currently, commonly accepted sediment EQS for Hg are missing in Europe. In this study we present a new, tiered approach to deriving sediment quality standards for Hg: the derivation of Predicted No-Effect Concentration (PNEC) from data in the literature, followed by adjusting values at regional scale, using ecological field data (macroinvertebrate community assessment) and field sediment ecotoxicity bioassays. The limited set of effect data available for Hg spiked-sediment ecotoxicity tests has resulted in unreliable PNEC values for sediment quality assessment. Field reference sites (n = 40) where the macroinvertebrate community status was assessed as High or Good were used to define the ecological background and threshold levels in sediments in northern Spain. Sediment QS developed in other areas were not suitable for specific basins in our study area, since they were within the range of our Hg background levels. Temporary sediment Quality Standards (QS) for Hg were developed for the Nalón River basin (where several mining districts occur), using field effect-based approaches such as sediment ecotoxicity data from Tubifex tubifex chronic bioassays and ecological assessment of macroinvertebrate communities. A proposal for Hg quality assessment in freshwater sediments of northern Spain is made based on ecologically relevant QS values, providing benchmark values for No-Effect and Effect Hg sediment concentrations.

<b>Stream macro-invertebrate diversity of the Phobjikha Valley, Bhutan</b>

Macro-invertebrates form an integral part of aquatic systems, and assessment of macro-invertebrate communities is one of the best ways to monitor the health of a stream. Despite this, stream monitoring of macro-invertebrates has been extremely limited in Bhutan. A study was conducted to generate baseline information on macro-invertebrate diversity in the Phobjikha valley, covering community composition and seasonal variation in diversity during post and pre-monsoon seasons. From a total of 244 units sampled in streams, 50 families from 13 orders were recorded. The dominant order overall was Ephemeroptera (31%), which also dominated the pre-monsoon assessment (33%), while Trichoptera (39%) dominated the post-monsoon assessment. The pre-monsoon assessment recorded two additional orders, Caenogastropoda and Veneroida. There was no significant difference in diversity between the post-monsoon and pre-monsoon assessments (p˃0.3), but a significant difference in species diversity between seasons was observed in pools and riffles. Physicochemical parameters indicated that pH, electrical conductivity and salinity were within favorable ranges for macro-invertebrates. Further studies of other habitats in different seasons will produce a more comprehensive understanding of macro-invertebrate diversity.

Invertebrate-Based Water Quality Impairments and Associated Stressors Identified through the US Clean Water Act.

Macroinvertebrate community assessment is used in most US states to evaluate stream health under the Clean Water Act. While water quality assessment and impairment determinations are reported to the US Environmental Protection Agency, there is no national summary of biological assessment findings. The objective of this work was to determine the national extent of invertebrate-based impairments and to identify pollutants primarily responsible for those impairments. Evaluation of state data in the US Environmental Protection Agency's Assessment and Total Maximum Daily Load Tracking and Implementation System database revealed considerable differences in reporting approaches and terminologies including differences in if and how states report specific biological assessment findings. Only 15% of waters impaired for aquatic life could be identified as having impairments determined by biological assessments (e.g., invertebrates, fish, periphyton); approximately one-third of these were associated with macroinvertebrate bioassessment. Nearly 650 invertebrate-impaired waters were identified nationwide, and sediment was the most common pollutant in bedded (63%) and suspended (9%) forms. This finding is not unexpected, given previous work on the negative impacts of sediment on aquatic life, and highlights the need to more specifically identify the mechanisms driving sediment impairments in order to design effective remediation plans. It also reinforces the importance of efforts to derive sediment-specific biological indices and numerical sediment quality guidelines. Standardization of state reporting approaches and terminology would significantly increase the potential application of water quality assessment data, reveal national trends, and encourage sharing of best practices to facilitate the attainment of water quality goals.

Observer rating of recreational use in wadeable streams of New York State, USA: Implications for nutrient criteria development

Like most other States and Tribes in the United States, New York State has been working with the United States Environmental Protection Agency to develop numeric nutrient criteria. These criteria are to protect water use such as drinking water supply, aquatic life, and recreation. Although extensive research exists related to the effects of eutrophication on human health and aquatic life, limited information is available on perceived impairment of recreational opportunities in rivers and streams. We present an approach to assess impacts to recreation using information collected by New York State's (NYS) monitoring program. This approach involved a questionnaire adapted from lake management surveys in which field crews rated their perceptions of recreational ability at each site. The ratings were then used to assess the relationship between perceived impact to recreational use and water quality. We include in our analyses the primary nutrient criteria variables total phosphorus (TP), total nitrogen (TN), suspended chlorophyll-a (SChl-a), and turbidity (Tb), as well as biological condition (benthic macroinvertebrate community assessment). We sampled 203 wadeable stream locations throughout NYS between July and September 2008–2012. Field crews ranked most locations as having “Minor aesthetic problems,” but still considered them excellent for both primary (34%) and secondary (37%) contact recreation. Field crew rankings of recreational ability coincided with a gradient of nutrients (TP and TN), SChl-a, and Tb concentration. Logistic regression models were developed that identified significant predictors affecting field crew decisions about recreation. These included water clarity, periphyton cover, and odor. Analysis of variance using NYS's multimetric assessment of biological condition and a nutrient specific community metric suggest significant differences in metric scores among recreational use categories. These results indicate correlation of impairment of recreational use with impairment of aquatic life use from nutrient enrichment. The results of this investigation will be used to help establish nutrient endpoints for the protection of recreation in NYS streams and rivers.

The Effectiveness of Riparian ‘Restoration’ on Water Quality—A Case Study of Lowland Streams in Canterbury, New Zealand

In New Zealand, around half of the lowland water bodies do not meet water quality standards, primarily due to widespread changes in land use. Riparian restoration has been occurring in New Zealand for over 30 years in an effort to minimize this impact, however, little monitoring of restoration effectiveness has been undertaken. This study evaluated the impact of riparian plantings on water quality of lowland streams in the Lake Ellesmere catchment. A paired‐catchment design on four river reaches was used to compare restored riparian buffers with control sites upstream. Chemical water quality sampling was used in conjunction with a macroinvertebrate community assessment. Equivocal benefits of riparian restoration were observed, with improvements in some variables but not in others. Riparian restoration had a positive effect on water quality in terms of increasing dissolved oxygen and decreasing turbidity. However, conductivity increased at planted sites and no changes were observed in other variables. These findings may be affected by the insufficient width of all four buffers, and gaps in the buffer system contributing to poor water quality. Although variable responses were seen in invertebrate community composition, this research suggests that even narrow planted buffer strips may be effective in improving some water quality parameters. The overall mixed results present a fair assessment of the benefits of riparian restoration that may be expected within a relatively short time following vegetation establishment. Even when no baseline data have been established prior to restoration, this research showed monitoring can demonstrate the effectiveness of riparian restoration.

Species diversity and functional assessment of macroinvertebrate communities in Austrian rivers

We applied an extensive data set from 211 locations along Austrian rivers to assess community structure and the ratios of functional feeding groups of benthic macroinvertebrates. A total of 569 taxa have been identified. At the catchment scale, the Enns, Salzach, and Traun Rivers exhibited the highest taxa richness whereas the Inn River showed the lowest richness. Beta-diversity was highest along the impounded and fragmented Enns and Drau Rivers. Consequently, high corridor diversity corresponded to a low degree of nestedness. Overall, scrapers and gathering-collectors dominated the benthic community. Further, the relationship between habitat conditions and metrics based on functional feeding groups were statistically analyzed to validate the potential of these metrics as indicators of ecosystem attributes. We examined four major ecosystem attributes: species diversity, material cycling, longitudinal material transport, and lateral material input. Multiple regression analyses for midorder rivers demonstrated that metrics were significantly related to habitat conditions. For example, the metric set indicating primary production was positively correlated with periphyton cover, dissolved oxygen, dominant sediment size, and average annual discharge. Overall, most metrics exhibited unique responses to habitat conditions, implying that they are useful proxies of ecosystem attributes. Thus, a function-based approach based on macroinvertebrates has the potential to become an effective tool for the assessment of river ecosystems.

Biological water quality assessment of running waters based on macroinvertebrate communities: History and present status in Europe

This paper reviews the history and development of biological water quality assessment using macroinvertebrates in Europe, and critically evaluates each of the principal approaches used. As the biotic approach incorporates the most highly regarded features of the saprobic and diversity approaches, it has received the most attention in recent years. Most modern biotic index and score systems have evolved from the Trent Biotic Index, through a series of refinements and adaptations (i.e. the Extended Biotic Index, Chandler's Score, Indice Biotique) into the two modern systems. These methods are the Biological Monitoring Working Party System, used mainly in Great Britain, and the Belgian Biotic Index Method. The results of these techniques are now influencing policy decisions concerning surface water management in Europe, where macroinvertebrate community assessment are being used as a planning tool for managing water uses, for ambient monitoring, and for evaluating the effectiveness of pollution control measures. New research directions aimed at improving the performance of bioassessment techniques are being explored. These include defining reference communities based on stream typology which can then be used to set water quality objectives, and applying these methods to the assessment of toxic pollution.