The structure and transport properties of the new Cellokon-AKH membrane based on animal cellulose obtained from tunic of ascidian Halocynthia aurantium were studied. The results of scanning electron microscopy (SEM), FTIR spectroscopy, and the X-ray diffraction data revealed significant differences in the structure and morphology of upper and lower surfaces of this layered film membrane based on animal cellulose. It was shown that the membrane surface is a network of intertwined cellulose fibers, with both denser and looser areas present on the lower surface compared to the completely uniform morphology of the main part of the upper surface. The hierarchical structure of tunicin-based outgrowths evenly distributed over the upper surface was determined and analyzed. The 3D visual representation of the surface structure was performed with the surface reconstruction technique using scanning electron microscope images. A surface model was calculated from the aligned images based on the photogrammetric approach. The transport properties of samples with different prehistory with respect to ethanol, water, and their mixtures of different compositions were studied depending on the pressure. Representing an alcohol-containing gel film in its original state, as solvents are removed, the membrane transforms into a low-permeability fibrillary organized selective film. The obtained results confirmed the possibility of using Cellokon-AKH (dried form) for the filtration of substances with a molecular weight of more than 600 Da in various media. Further study of this new material will allow to get closer to understanding the structure of the studied seabed inhabitants and to use these natural resources more efficiently.