Agriculture is a major contributor to habitat transformation, homogenising biological communities, and reducing biodiversity at local and regional scales. Over time, biotic homogenisation causes regional biotas to become genetically, taxonomically, and functionally similar, impacting the functioning and resilience of natural and agricultural systems. Here, we assessed alpha and beta diversity, trait diversity, and trait composition of spider and beetle assemblages in biodiversity-friendly vineyards and natural fynbos vegetation (a low-growing sclerophyllous vegetation type) in the Cape Floristic Region biodiversity hotspot to evaluate the influence of viticulture on large-scale patterns of arthropod diversity. Transects spanning from vineyards into fynbos were used to analyse differences in arthropod assemblages between the two biotopes. Spider species richness was significantly higher in fynbos compared to vineyards, but both systems supported relatively high spider and beetle alpha diversity. Spider beta diversity did not differ between the systems, but beetle beta diversity was significantly lower in vineyards. This difference was due to a lower level of assemblage nestedness, whereas beetle species replacement was similar in vineyards and fynbos. Only spider trait richness and beetle trait divergence were significantly lower in vineyards compared to fynbos. Assemblage composition of both taxonomic groups differed between biotopes, due to different species trait associations with each biotope. Plant-dwelling spiders and small-bodied beetles were strongly positively associated with fynbos, and predatory beetles with vineyards. Common spiders and predatory beetles were strongly negatively associated with fynbos. Our results indicate that vineyards support high arthropod diversity when compared to the natural vegetation. This supports the concept that sensitively managed agroecosystems can maintain species-rich assemblages at different spatial scales.