Enhancing the temperature distribution uniformity in membrane electrodes is crucial for improving the durability and performance stability of proton exchange membrane fuel cells. In this study, we discovered an entrance region in the cathode membrane electrode of proton exchange membrane fuel cells characterized by a rapid rise in temperature. This inlet region shows a notably higher temperature variation rate compared to other regions. This phenomenon is attributed to the temperature difference between the constant temperature fluid supplied by the channel inlet and the heat generation in the cathode catalyst layer. Thus, the impact of channel structure at the entrance region on the temperature distribution of the cathode catalyst layer is investigated, based on a three-dimensional, non-isothermal, two-phase model. Results show that boosting heat transfer in the inlet region is more effective for reducing the average temperature than in other regions. We proposed five kinds of step arrangement schemes and discovered that the step arrangement in the entrance region of the cathode flow channel can increase the temperature uniformity of the cathode catalyst layer by 9.71% without net power loss. Furthermore, this study examines the impact of length, height of entrance steps, and outlet channel height on heat transfer and identifies the optimum value. When severe water flooding occurs, the gas purge coupled with the step-fronted scheme is essential for improving temperature uniformity.