Longan fruit pulp sugar content and sweetness decline after ripening, which affects fruit quality and postharvest storage. Fruit sugar decline research has focused mainly on fruit physiology and biochemistry. To explore the molecular mechanism underlying sugar decline, we conducted transcriptome and metabolome analyses of ‘Shixia’ longan fruit aril (pulp) tissues at different stages of development. In total, 873 metabolites and 26584 annotated unigenes were identified. Sugar content changes in aril tissues were closely related to gene expression patterns related to starch and sucrose metabolism, such as sucrose phosphate synthase (SPS), invertase (INV), sucrose synthase (SUS), and glucose-6-phosphate isomerase (GPI). Notably, glycolytic pathway gene expression and cellulose and lignin contents increased during the sugar decline stage compared to the sugar accumulation stage. Conversely, sucrose transporter genes, such as DlSWEET2b, DlSWEET10, and DlSWEET12, showed the opposite expression pattern, pointing to reduced sucrose transport during sugar decline. These results indicate that longan fruit sugar decline is likely related to an interruption of sugar input (cessation of sucrose transport to the aril) and continued glycolysis and cellulose/lignin biosynthesis. This provides a new way to delay longan fruit sugar decline, by regulating sugar transport instead of inhibiting respiration.
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