Arbuscular Mycorrhizal Fungi Families Research Articles

Diversity of endomycorrhizal and ectomycorrhizal fungi in the rhizosphere of Helianthemum ledifolium in the Bni Guil area (Eastern Morocco)

This work aimed to study the diversity of arbuscular mycorrhizal fungi (AMF) and ectomycorrhizal fungi (ECM) present in the rhizosphere of Helianthemum ledifolium in the Bni Guil area (Figuig Province, Morocco), known for its arid climate and desert truffle production. Soil samples from the rhizosphere of Helianthemum ledifolium were taken for spore extraction, while the roots of this host plant were sampled for root observation. The results of this study showed that the density of spores extracted by wet sieving was 165 spores per 50g of the soil. Identification of these spores indicated the presence of 37 species, belonging to three AMF families (Glomeraceae, Acaulosporaceae, and Claroideoglomeraceae) and one ECM family (Cistaceae). The Glomus and Acaulospora genera are the most dominant, with 17 and 14 species, respectively, compared with the other genera. In addition, the frequency of occurrence of the Glomus genus is higher (50%) than that of the other fungal genera present, especially the Terfezia genus, reflecting the scarcity of desert truffles in recent decades. The results of root observations showed the presence of ectomycorrhization with a typical Hartig network and no fungal mantle, despite the dominance of AMF fungi, indicating some host specificity towards ECM fungi.

Rhizoglomus variabile and Nanoglomus plukenetiae, Native to Peru, Promote Coffee Growth in Western Amazonia.

Coffee (Coffea arabica) is among the world's most economically important crops. Coffee was shown to be highly dependent on arbuscular mycorrhizal fungi (AMF) in traditionally managed coffee plantations in the tropics. The objective of this study was to assess AMF species richness in coffee plantations of four provinces in Perú, to isolate AMF isolates native to these provinces, and to test the effects of selected indigenous AMF strains on coffee growth. AMF species were identified by morphological tools on the genus level, and if possible further to the species level. Two native species, Rhizoglomus variabile and Nanoglomus plukenetiae, recently described from the Peruvian mountain ranges, were successfully cultured in the greenhouse on host plants. In two independent experiments, both species were assessed for their ability to colonize coffee seedlings and improve coffee growth over 135 days. A total of 35 AMF morphospecies were identified from 12 plantations. The two inoculated species effectively colonized coffee roots, which resulted in 3.0-8.6 times higher shoot, root and total biomass, when compared to the non-mycorrhizal controls. R. variabile was superior to N. plukenetiae in all measured parameters, increasing shoot, root, and total biomass dry weight by 4.7, 8.6 and 5.5 times, respectively. The dual inoculation of both species, however, did not further improve plant growth, when compared to single-species inoculations. The colonization of coffee by either R. variabile or N. plukenetiae strongly enhances coffee plant growth. R. variabile, in particular, offers enormous potential for improving coffee establishment and productivity. Assessment of further AMF species, including species from other AMF families should be considered for optimization of coffee growth promotion, both alone and in combination with R. variabile.

Evolutionary characteristics of arbuscular mycorrhizal fungi in Eucalyptus soil and driving changes in biologically‐based phosphorus across Eucalyptus plantations

AbstractArbuscular mycorrhizal fungi (AMF) symbiosis plays essential roles in shaping rhizosphere soil available phosphorus (P) and organic P mobilization. However, current methods for assessing soil P often do not fully consider the potential role of arbuscular mycorrhizal fungi (AMF) in supplying biologically‐based phosphorus (BBP) to Eucalyptus. This study aims to investigate the effects of AMF on the soil BBP of Eucalyptus plantations and which species prefer to translocate them in phosphorus‐deficient soils. Rhizosphere soil samples of Eucalyptus plantations (in south China) exhibiting different ages (varying between 1 to 12 years) were selected to investigate the evolution of AMF and BBP in soils, as well as their interaction mechanism. The impacts of eight AMF families on BBP were investigated in rhizosphere soil. All BBP contents are significantly positively correlated with Olsen P in the rhizosphere soil of Eucalyptus plantations (p < 0.01). The BBP in soil was notably influenced by AMF diversity, while AMF richness showed little effect on BBP. The abundance of Glomeraceae taxa showed a positive correlation with BBP and a negative correlation with Paraglomeraceae. In contrast, the relative abundance of Glomeraceae was higher in older plantations (including Archaeosporaceae, Claroideoglomeraceae). From the above results, we concluded that different species of the AMF modulated their mycorrhizal traits by improving BBP uptake in the rhizosphere soil. AMF groups (such as Glomeraceae, Archaeosporaceae, Claroideoglomeraceae) should be introduced or amplified at the beginning of planting to promote the uptake and utilization of bioavailable P in Eucalyptus plantations. This study will deepen our understanding of AMF for effective BBP utilization in Eucalyptus plantations.

Root diameter, host specificity and arbuscular mycorrhizal fungal community composition among native and exotic plant species.

Plant root systems rely on a functionally diverse range of arbuscular mycorrhizal fungi to, among other benefits, extend their nutrient foraging. Extended nutrient foraging is likely of greatest importance to coarse-rooted plants, yet few studies have examined the link between root traits and arbuscular mycorrhizal fungal community composition. Here, we examine the relationship between root diameter and the composition of arbuscular mycorrhizal fungal communities in a range of native and exotic plant species. We characterized the arbuscular mycorrhizal fungal communities of 30 co-occurring native and exotic montane grassland/shrubland plant species in New Zealand. We found that plant root diameter and native/exotic status both strongly correlated with arbuscular mycorrhizal fungal community composition. Coarse-rooted plants had a lower diversity of mycorrhizal fungi compared with fine-rooted plants and associated less with generalist fungal partners. Exotic plants had a lower diversity of fungi and fewer associations with nondominant families of arbuscular mycorrhizal fungi compared with native plants. These observational patterns suggest that plants may differentially associate with fungal partners based on their root traits, with coarse-rooted plants being more specific in their associations. Furthermore, exotic plants may associate with dominant arbuscular mycorrhizal fungal taxa as a strategy in invasion.

Effects of Arbuscular Mycorrhizal Fungi on Leaf N: P: K Stoichiometry in Agroecosystem

Leaf nitrogen (N), phosphorus (P), and potassium (K) stoichiometry can reflect plant strategies of nutrient allocation, which play key roles in ensuring food security and maintaining nutrient balance in the agroecosystem. Arbuscular mycorrhizal fungi (AMF) inoculation is an effective and green management measure affecting nutrient uptake and utilization strategies, especially in the agroecosystem. However, the interplay between AMF and leaf nutrient stoichiometry that is important for sustainable agriculture remain underexplored. Therefore, the efficacy of AMF in improving leaf nutrients of host plants in agricultural ecosystems were tested with meta-analysis by 1932 pairs of observations in research publications from 1995 to 2022. Overall analysis showed that AMF inoculation increases leaf N, P, and K by 8.75%, 24.61%, and 13.54%, respectively. Moreover, leaf P: K increased by 11.74% by AMF inocula, but leaf N: P and N: K of host plants decreased by 15.38% and 5.52%, respectively. Furthermore, the AMF effect on leaf nutrient stoichiometry was significantly regulated by species, life cycle, and growth habits of host plants. The prominent efficacy of AMF was higher for leaf P in fruit (30.06%), perennial (30.19%), and woody plants (31.6%) than other groups. Moreover, AMF effects on leaf N: P: K stoichiometry of inoculated crops varied depending on the identity of AMF. The Glomeraceae (especially Rhizophagus genera) increased more leaf P content than other AMF families. Thus, the leaf nutrient of host plants significantly increased by AMF inocula, especially leaf P content in the agroecosystem. The effect of AMF on leaf N: P: K stoichiometry was related to plant species, plant life cycle, plant growth habits, and the identity of AMF. These findings highlight the response of AMF to the strategies of nutrient in host plants and provide a theoretical and applicable way for better crop yield and sustainable agriculture.

Short-term modifications of mycorrhizal fungi, glomalin and soil attributes in a tropical agroforestry

Arbuscular mycorrhizal fungi (AMF) community and the Glomalin-related soil protein (GRSP) they produce plays important roles in maintaining soil ecosystem functions, promoting ecological restoration, and are important for monitoring changes in soil health from land use change. This research addressed the subtle modifications of AMF and GRSP in different land use types and their association with soil properties. Our objectives were: 1) to assess land use effects on AMF spore density, diversity, and composition besides glomalin fractions (EEG, easily extracted GRSP; TG, total GRSP), and 2) to quantify the relationships between glomalin, AMF community metrics, soil organic carbon (SOC), and key soil quality parameters. Soils were collected in the dry and rainy seasons of 2018 under five land uses, including: three types of agroforestry systems (AS1, AS2 and AS3), an unmanaged pasture and a secondary forest in the state of Rio de Janeiro, Brazil. Linear mixed-effects model and multivariate analyses showed that land uses had influenced the AMF community, meanly at the family level. On the other hand, seasonality has not proved to be an essential factor that modulates the changes of the AMF community and glomalin production. The management practices had influenced AMF sporulation and the number of total species in agroforestry systems. Glomalin is a potential contributor for SOC, mainly in agroforestry systems and pasture plots. Moreover, we found a correlation between the AMF community and key soil parameters. For example, most of the AMF families and spore density were positively correlated with the stability of soil aggregates and SOC. Our findings shed light on that land-use change can shift the AMF community, glomalin and their relationship to key soil quality parameters. Moreover, the adoption of agroforestry systems indicates maintenance of biodiversity and other soil quality parameters with future implications for their use to recover degraded areas.

Grazing Intensity Rather than Host Plant's Palatability Shapes the Community of Arbuscular Mycorrhizal Fungi in a Steppe Grassland.

Arbuscular mycorrhizal fungi (AMF) are the predominant type of mycorrhizal fungi in roots and rhizosphere soil of grass species worldwide. Grasslands are currently experiencing increasing grazing pressure, but it is not yet clear how grazing intensity and host plant grazing preference by large herbivores interact with soil- and root-associated AMF communities. Here, we tested whether the diversity and community composition of AMF in the roots and rhizosphere soil of two dominant perennial grasses, grazed differently by livestock, change in response to grazing intensity. We conducted a study in a long-term field experiment in which seven levels of field-manipulated grazing intensities were maintained for 13 years in a typical steppe grassland in northern China. We extracted DNA from the roots and rhizosphere soil of two dominant grasses, Leymus chinense (Trin.) Tzvel. and Stipa grandis P. Smirn, with contrasting grazing preference by sheep. AMF DNA from root and soil samples was then subjected to molecular analysis. Our results showed that AMF α-diversity (richness) at the virtual taxa (VT) level varied as a function of grazing intensity. Different VT showed completely different responses along the gradient, one increasing, one decreasing, and others showing no response. Glomeraceae was the most abundant AMF family along the grazing gradient, which fits well with the theory of disturbance tolerance of this group. In addition, sheep-grazing preference for host plants did not explain much of the variation in AMF α-diversity. However, the two grass species exhibited different AMF community composition in their roots and rhizosphere soils. Roots exhibited a lower α-diversity and higher β-diversity within the AMF community than soils. Overall, our results suggest that long-term grazing intensity might have changed the abundance of functionally diverse AMF taxa in favor of those with disturbance-tolerant traits. We suggest our results would be useful in informing the choice of mycorrhizal fungi indicator variables when assessing the impacts of grassland management choices on grassland ecosystem functioning.

In-depth Phylogenomic Analysis of Arbuscular Mycorrhizal Fungi Based on a Comprehensive Set of de novo Genome Assemblies.

Morphological characters and nuclear ribosomal DNA (rDNA) phylogenies have so far been the basis of the current classifications of arbuscular mycorrhizal (AM) fungi. Improved understanding of the evolutionary history of AM fungi requires extensive ortholog sampling and analyses of genome and transcriptome data from a wide range of taxa. To circumvent the need for axenic culturing of AM fungi we gathered and combined genomic data from single nuclei to generate de novo genome assemblies covering seven families of AM fungi. We successfully sequenced the genomes of 15 AM fungal species for which genome data was not previously available. Comparative analysis of the previously published Rhizophagus irregularis DAOM197198 assembly confirm that our novel workflow generates genome assemblies suitable for phylogenomic analysis. Predicted genes of our assemblies, together with published protein sequences of AM fungi and their sister clades, were used for phylogenomic analyses. We evaluated the phylogenetic placement of Glomeromycota in relation to its sister phyla (Mucoromycota and Mortierellomycota), and found no support to reject a polytomy. Finally, we explored the phylogenetic relationships within Glomeromycota. Our results support family level classification from previous phylogenetic studies, and the polyphyly of the order Glomerales with Claroideoglomeraceae as the sister group to Glomeraceae and Diversisporales.

Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit

Almost all land plants form symbiotic associations with arbuscular mycorrhizal fungi (AMF). Individual plants usually are colonized by a wide range of phylogenetically diverse AMF species. The impact that different AMF taxa have on plant growth is only partly understood. We screened 44 AMF isolates for their effect on growth promotion and nutrient uptake of leek plants (Allium porrum), including isolates that have not been tested previously. In particular, we aimed to test weather AMF lineages with an ancient evolutionary age differ from relatively recent lineages in their effects on leek plants. The AMF isolates that were tested covered 18 species from all five AMF orders, eight families, and 13 genera. The experiment was conducted in a greenhouse. A soil–sand mixture was used as substrate for the leek plants. Plant growth response to inoculation with AMF varied from − 19 to 232% and depended on isolate, species, and family identity. Species from the ancient families Archaeosporaceae and Paraglomeraceae tended to be less beneficial, in terms of stimulation plant growth and nutrient uptake, than species of Glomeraceae, Entrophosporaceae, and Diversisporaceae, which are considered phylogenetically more recent than those ancient families. Root colonization levels also depended on AMF family. This study indicates that plant benefit in the symbiosis between plants and AMF is linked to fungal identity and phylogeny and it shows that there are large differences in effectiveness of different AMF.

Arbuscular mycorrhizal fungal community structure following different grazing intensities in an alpine grassland

AbstractGrazing alters the plant communities, soil properties, and habitat conditions of the alpine grassland. Arbuscular mycorrhizal fungi (AMF) are involved in the nutrient cycling of grassland ecosystems and form a mutual symbiosis with their host plants. Thus, AMF are sensitive to the impact of livestock grazing. However, the effects of grazing intensity on the AMF community composition and the association between AMF and environmental factors, such as soil physicochemical properties, enzyme activity, and glomalin‐related soil proteins, remain unclear. Here, the response of the soil AMF community to grazing intensity gradients (i.e., light, moderate, and heavy grazing) was studied in an alpine grassland on the Qinghai‐Tibet Plateau. The dominant AMF families included Glomeraceae, Gigasporaceae, Claroideoglomeraceae, Diversisporaceae, and Ambisporaceae. Significant shifts in the AMF community composition in response to grazing intensity were found in both surface and subsurface soils. Soil C/N ratio, plant diversity, soil compactness, chitinase activity, aboveground biomass, total N, soil moisture, and NO3−–N significantly correlated with changes in the AMF community composition. Heavy grazing intensity was associated with the highest AMF alpha diversity, whereas moderate grazing intensity had the lowest AMF alpha diversity in both surface and subsurface soils. Grazing intensity, dominant plants, soil C and N concentrations, and soil compactness were significantly correlated with AMF diversity. These results demonstrated a significant response of the AMF community to grazing intensity, suggesting that plants increase their reliance on AMF symbioses with higher alpha diversity in the heavily degraded alpine grasslands of the Qinghai‐Tibet Plateau.

Local patterns of arbuscular mycorrhizal fungal diversity and community structure in a natural Toona ciliata var. pubescens forest in South Central China.

Toona ciliata var. pubescens (Toona in Meliaceae) (Tc) is listed as an endangered species, and there are natural regeneration obstacles due to its long-term excessive exploitation and utilization. Arbuscular mycorrhizal fungi (AMF) can produce beneficial effects for plant growth and natural regeneration. However, the characteristics of the AMF community in natural Tc forests are poorly understood. The Illumina PE250 high-throughput sequencing method was used to study the characteristics of the AMF community in the rhizosphere soil and roots associated with three dominant tree species (Tc; Padus buergeriana, Pb; and Maesa japonica, Mj) in a natural Tc forest in Guanshan National Natural Reserve, South Central China. The results found that Glomeraceae was the most abundant AMF family in the rhizosphere soil and roots. Moreover, the relative abundance of Archaeosporaceae in rhizosphere soil was significantly larger than that in the roots; in contrast, the relative abundance of Glomeraceae in rhizosphere soil was significantly lower than that in the roots (p < 0.05). Regarding different tree species, the relative abundances of Acaulosporaceae and Geosiphonaceae were larger in Mj and Tc than in Pb. AMF operational taxonomic units (OTUs) were 1.30-, 1.43-, and 1.71-fold higher in the Tc, Pb, and Mj rhizosphere soil, respectively, than in the corresponding roots. Nevertheless, higher AMF community richness was found in the roots compared to that in the rhizosphere soil based on the Chao index. This finding indicated that AMF of a relatively high aggregation degree were in roots, and more AMF groups with relatively low abundance occurred in the rhizosphere soil, which correspondingly lowered the calculated richness index of the AMF community. A redundancy analysis showed that different soil chemical properties impacted variations in the AMF community characteristics differently. This study has great significance for the interpretation of AMF diversity survey and the application design of AMF in vegetation restoration.

A comparison of the arbuscular mycorrhizal fungal communities among Bangladeshi modern high yielding and traditional rice varieties

Arbuscular Mycorrhizal Fungi (AMF) are ubiquitous soil microorganisms playing a vital role in the functioning of agricultural ecosystems. Although AMF are generally considered to have a low host specificity, it has been suggested that modern plant breeding has selected crop genotypes that are more selectively associated with AMF, possibly resulting in modern high yielding varieties (HYV) having a lower AMF diversity than traditional crop varieties. Whether this is true for paddy rice varieties under field conditions is not known so far. Here, we aimed at comparing differences of AMF communities among modern HYV and traditional rice varieties. We collected root and soil samples of five Bangladeshi rice varieties (two traditional and three modern HYV) from 40 different rice fields and quantified AMF richness, diversity and community composition through high throughput amplicon sequencing of the small subunit (SSU) of the ribosomal RNA cistron. Overall, 75 AMF OTUs, distributed over six AMF families with Glomeraceae as predominant family were found. After accounting for differences in soil conditions, we found that AMF diversity significantly differed among the five varieties and was higher in the traditional than modern varieties. The composition and structure of the AMF communities were distinct between the traditional and modern varieties. An indicator species analysis detected 9 OTUs significantly associated with traditional rice varieties, whereas no indicator OTUs were found for the modern HYV. We conclude that modern breeding coupled with high fertilizer application rates provide a plausible explanation for the reduced AMF diversity and the different AMF community composition between Bangladeshi modern HYV and traditional varieties.

Community Structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy.

Learning more about the biodiversity and composition of arbuscular mycorrhizal fungi (AMF) under alternative agricultural management scenarios may be important to the sustainable intensification of switchgrass grown as a bioenergy crop. Using PacBio single-molecule sequencing and taxonomic resolution to the level of amplicon sequence variant (ASV), we assessed the effects of nitrogen amendment on AMF associating with switchgrass and explored relationships between AMF and switchgrass yield across three sites of various productivities in Wisconsin. Nitrogen amendment had little effect on AMF diversity metrics or community composition. While AMF ASV diversity was not correlated with switchgrass yield, AMF family richness and switchgrass yield had a strong, positive relationship at one of our three sites. Each of our sites was dominated by unique ASVs of the species Paraglomus brasilianum, indicating regional segregation of AMF at the intraspecific level. Our molecular biodiversity survey identified putative core members of the switchgrass microbiome, as well as novel clades of AMF, especially in the order Paraglomerales and the genus Nanoglomus Furthermore, our phylogenies unite the cosmopolitan, soil-inhabiting clade deemed GS24 with Pervetustaceae, an enigmatic family prevalent in stressful environments. Future studies should isolate and characterize the novel genetic diversity found in switchgrass agroecosystems and explore the potential yield benefits of AMF richness.IMPORTANCE We assessed the different species of beneficial fungi living in agricultural fields of switchgrass, a large grass grown for biofuels, using high-resolution DNA sequencing. Contrary to our expectations, the fungi were not greatly affected by fertilization. However, we found a positive relationship between plant productivity and the number of families of beneficial fungi at one site. Furthermore, we sequenced many species that could not be identified with existing reference databases. One group of fungi was highlighted in an earlier study for being widely distributed but of unknown taxonomy. We discovered that this group belonged to a family called Pervetustaceae, which may benefit switchgrass in stressful environments. To produce higher-yielding switchgrass in a more sustainable manner, it could help to study these undescribed fungi and the ways in which they may contribute to greater switchgrass yield in the absence of fertilization.

A Meta-Analytical Approach on Arbuscular Mycorrhizal Fungi Inoculation Efficiency on Plant Growth and Nutrient Uptake

Arbuscular mycorrhizal fungi (AMF) are obligate symbionts of higher plants which increase the growth and nutrient uptake of host plants. The primary objective was initiated based on analyzing the enormity of optimal effects upon AMF inoculation in a comparative bias between mycorrhizal and non-mycorrhizal plants stipulated on plant biomass and nutrient uptake. Consequently, in accomplishing the above-mentioned objective a vast literature was collected, analyzed, and evaluated to establish a weighted meta-analysis irrespective of AMF species, plant species, family and functional group, and experimental conditions in the context of beneficial effects of AMF. I found a significant increase in the shoot, root, and total biomass by 36.3%, 28.5%, and, 29.7%, respectively. Moreover, mycorrhizal plants significantly increased phosphorus, nitrogen, and potassium uptake by 36.3%, 22.1%, and 18.5%, respectively. Affirmatively upon cross-verification studies, plant growth parameters intensification was accredited to AMF (Rhizophagus fasciculatus followed by Funniliforme mosseae), plants (Triticum aestivum followed by Solanum lycopersicum), and plant functional groups (dicot, herbs, and perennial) were the additional vital important significant predictor variables of plant growth responses. Therefore, the meta-analysis concluded that the emancipated prominent root characteristics, increased morphological traits that eventually help the host plants for efficient phosphorus uptake, thereby enhancing plant biomass. The present analysis can be rationalized for any plant stress and assessment of any microbial agent that contributes to plant growth promotion.

Distribution of arbuscular mycorrhizal fungi (AMF) in Terceira and São Miguel Islands (Azores).

BackgroundThe data, presented here, come from samples collected during three research projects which aimed to assess the impact of land-use type on Arbuscular Mycorrhizal Fungi (AMF) diversity and community composition in pastures of Terceira Island (Azores, Macaronesia, Portugal) and also in the native forest of two Azorean Islands (Terceira and São Miguel; Azores, Macaronesia, Portugal). Both projects contributed to improving the knowledge of AMF community structure at both local and regional scales.New informationLittle is known on the AMF communities from Azores islands and this study reports the first survey in two Azorean Islands (Terceira and São Miguel). A total of 18,733 glomeromycotan spores were classified at the species level from 244 field soil samples collected in three different habitat types – native forests (dominated by Juniperus brevifolia and Picconia azorica), semi-natural and intensively-managed pastures. Thirty-seven distinct spore morphotypes, representing ten glomeromycotan families, were detected. Species of the family Acaulosporaceae dominated the samples, with 13 species (38% of the taxa), followed by Glomeraceae (6 spp.), Diversisporaceae (4 spp.), Archaeosporaceae (3 spp.), Claroideoglomeraceae (3 spp.), Gigasporaceae (3 spp.), Ambisporaceae and Paraglomeraceae, both with the same number of AMF species (2 spp.), Sacculosporaceae (1 sp.) and Entrophospora (family insertae sedis). Members of the family Acaulosporaceae occurred almost exclusively in the native forests especially associated with the Picconia azorica rhizosphere, while members of Gigasporaceae family showed a high tendency to occupy the semi-natural pastures and the native forests of Picconia azorica. Members of Glomeraceae family were broadly distributed by all types of habitat which confirm the high ecological plasticity of this AMF family to occupy the more diverse habitats.

Nodule-forming Sinorhizobium and arbuscular mycorrhizal fungi (AMF) improve the growth of Acacia farnesiana (Fabaceae): an alternative for the reforestation of the Cerro de la Estrella, Mexico

Background: Cerro de la Estrella (CE) is a natural reserve in Mexico City that suffers from afforestation, and its restoration with Acacia farnesiana is being considered . &#x0D; Question: Will the nodule-forming rhizobia and arbuscular mycorrhizal fungi (AMF) associated with the CE soil support A. farnesiana growth?&#x0D; Study species: Acacia farnesiana (L.) Willd . (Fabaceae).&#x0D; Methods: Mycorrhizal fungi, nodule-forming rhizobia and physicochemical characteristics of the CE soil were studied to determine if they are suitable for improving the growth of Acacia farnesiana .&#x0D; Results: Four different families of AMF were found which generated 13 % mycorrhization with A. farnesiana . However, A. farnesiana from CE did not nodulate, suggesting the lack of native rhizobia. The CE soil has low fertility. Nodules of A. farnesiana were obtained from the soil in Ticuman, Morelos, and 66 rhizobia were isolated from them. Rhizobium isolates were individually added to A. farnesiana grown in the CE soil. Five of the 66 isolates yielded significant differences in shoot dry weight, shoot height, number of nodules, nodulation time and nitrogenase activity compared with the Sinorhizobium americanum CFNEI 156 control strain ( p &lt; 0.05). Three isolates were named as S. americanum ENCBTM1, ENCBTM31 and ENCBTM43, and last two as Sinorhizobium sp. ENCBTM34 and ENCBTM45.&#x0D; Conclusions: CE soil had low fertility and lacked specific rhizobia for A. farnesiana . The individual addition of S. americanum (ENCBTM1, ENCBTM31 or ENCBTM43) or Sinorhizobium sp. (ENCBTM34 or ENCBTM45) improved the growth of A. farnesiana.

Aphids Influence Soil Fungal Communities in Conventional Agricultural Systems.

Arbuscular mycorrhizal fungi (AMF) form symbioses with the roots of most plant species, including cereals. AMF can increase the uptake of nutrients including nitrogen (N) and phosphorus (P), and of silicon (Si) as well as increase host resistance to various stresses. Plants can simultaneously interact with above-ground insect herbivores such as aphids, which can alter the proportion of plant roots colonized by AMF. However, it is unknown if aphids impact the structure of AMF communities colonizing plants or the extent of the extraradical mycelium produced in the soil, both of which can influence the defensive and nutritional benefit a plant derives from the symbiosis. This study investigated the effect of aphids on the plant-AMF interaction in a conventionally managed agricultural system. As plants also interact with other soil fungi, the non-AMF fungal community was also investigated. We hypothesized that aphids would depress plant growth, and reduce intraradical AMF colonization, soil fungal hyphal density and the diversity of AM and non-AM fungal communities. To test the effects of aphids, field plots of barley enclosed with insect proof cages were inoculated with Sitobion avenae or remained uninoculated. AMF specific and total fungal amplicon sequencing assessed root fungal communities 46 days after aphid addition. Aphids did not impact above-ground plant biomass, but did increase the grain N:P ratio. Whilst aphid presence had no impact on AMF intraradical colonization, soil fungal hyphal length density, or AMF community characteristics, there was a trend for the aphid treatment to increase vesicle numbers and the relative abundance of the AMF family Gigasporaceae. Contrary to expectations, the aphid treatment also increased the evenness of the total fungal community. This suggests that aphids can influence soil communities in conventional arable systems, a result that could have implications for multitrophic feedback loops between crop pests and soil organisms across the above-below-ground interface.

Variation in arbuscular mycorrhizal fungal communities associated with lowland rice (Oryza sativa) along a gradient of soil salinity and arsenic contamination in Bangladesh

Rice is an essential food crop that nourishes >50% of the world population. In many regions of Bangladesh rice production is constrained by high soil salinity and heavy metal contamination due to irrigation practices. Plants may naturally overcome such stress through mutualistic interactions with arbuscular mycorrhizal fungi (AMF). Yet, little is known regarding the diversity and composition of AMF communities in rice fields with high saline and arsenic concentration. Here we used high throughput Illumina sequencing to characterize AMF communities in rice roots from 45 Bangladeshi rice fields, along a large geographical gradient of soil salinity and arsenic contamination. We obtained 77 operational taxonomic units (OTUs, based on a sequence similarity threshold of 97%) from eight AMF families, and showed that high soil salinity and arsenic concentration are significantly associated with low AMF diversity in rice roots. Soil salinity and arsenic concentration also explained a large part of the variation in AMF community composition, but also soil pH, moisture, organic matter content and plant available soil phosphorus played an important role. Overall, our study showed that even at very high salinity and arsenic levels, some AMF OTUs are present in rice roots. Their potential role in mediating a reduction of rice stress and arsenic uptake remains to be investigated.

First report of community dynamics of arbuscular mycorrhizal fungi in radiocesium degradation lands after the Fukushima-Daiichi Nuclear disaster in Japan

Arbuscular mycorrhizal fungi (AMF) can be beneficial for improving restoration of radioactive-cesium (137Cs)-contaminated soils through soil remediation. However, there has been no information on species diversity and the composition of AMF communities in 137Cs-contaminated soil after the Fukushima-Daiichi Nuclear Power Plant (NPP) disaster. We examined the community dynamics of indigenous AMF colonizing roots of napiergrass (Pennisetum purpureum) in two different 137Cs-contaminated land-use fields (grassland and paddy field) by an Illumina MiSeq sequencing investigation within a 30-km radius around the Fukushima-Daiichi NPP in 2013 (sampling year 1) and 2014 (sampling year 2). We found nine AMF families, including Glomeraceae, Gigasporaceae, Paraglomeraceae, Claroideoglomeraceae, Acaulosporaceae, Archeosporaceae, Ambisporaceae, Diversisporaceae and uncultured Glomeromycotina in roots. Glomeraceae was the most abundant in both grassland and paddy field, followed by Paraglomeraceae. The diversity of AMF in grassland and paddy field was higher in 2014 than in 2013. Furthermore, the AMF community structure was impacted by sampling year and land-use type. The AMF community structures colonizing napiergrass roots were also significantly impacted by land-use type and year throughout the 2-year investigation. To our knowledge, our results are the first report to reveal the community dynamics of indigenous AMF in the 137Cs-contaminated fields around NPP.

Ultra-low input transcriptomics reveal the spore functional content and phylogenetic affiliations of poorly studied arbuscular mycorrhizal fungi.

Arbuscular mycorrhizal fungi (AMF) are a group of soil microorganisms that establish symbioses with the vast majority of land plants. To date, generation of AMF coding information has been limited to model genera that grow well axenically; Rhizoglomus and Gigaspora. Meanwhile, data on the functional gene repertoire of most AMF families is non-existent. Here, we provide primary large-scale transcriptome data from eight poorly studied AMF species (Acaulospora morrowiae, Diversispora versiforme, Scutellospora calospora, Racocetra castanea, Paraglomus brasilianum, Ambispora leptoticha, Claroideoglomus claroideum and Funneliformis mosseae) using ultra-low input ribonucleic acid (RNA)-seq approaches. Our analyses reveals that quiescent spores of many AMF species harbour a diverse functional diversity and solidify known evolutionary relationships within the group. Our findings demonstrate that RNA-seq data obtained from low-input RNA are reliable in comparison to conventional RNA-seq experiments. Thus, our methodology can potentially be used to deepen our understanding of fungal microbial function and phylogeny using minute amounts of RNA material.