Aquatic Eddy Covariance Technique Research Articles

Temperature threshold for seagrass (Zostera marina) ecosystem production derived from in situ aquatic eddy covariance measurements

As seagrass meadows are increasingly threatened by warming oceans and extreme heating events, it is critical that we enhance our understanding of their ecosystem response to heat stress. This study relied on our extensive database of hourly eelgrass Zostera marina ecosystem metabolism to determine, for the first time, the temperature stress threshold (Tth) of Z. marina meadows under naturally varying in situ conditions. Eelgrass ecosystem metabolism was measured using the aquatic eddy covariance technique in a 20 km2 meadow at the Virginia Coast Reserve (USA). We constructed and fitted a non-linear multivariate model to identify 28.6°C as the threshold above which substantial negative effects on net photosynthesis occur. On average, daytime oxygen fluxes decreased by 50% on afternoons when Tth was exceeded, which shifted daily net ecosystem metabolism from metabolic balance to net heterotrophy and therefore a loss in carbon. This study highlights the vulnerability of eelgrass meadows to future warming projections.

A high‐resolution submersible oxygen optode system for aquatic eddy covariance

AbstractThe aquatic eddy covariance technique is increasingly used to determine oxygen (O2) fluxes over benthic ecosystems. The technique uses O2 measuring systems that have a high temporal and numerical resolution. In this study, we performed a series of lab and field tests to assess a new optical submersible O2 meter designed for aquatic eddy covariance measurements and equipped with an existing ultra‐high speed optical fiber sensor. The meter has a 16‐bit digital‐to‐analog‐signal conversion that produces a 0–5 V output at a rate up to 40 Hz. The device was paired with an acoustic Doppler velocimeter. The combined meter and fiber‐optic O2 sensor's response time was significantly faster in O2‐undersaturated water compared to in O2‐supersaturated water (0.087 vs. 0.12 s), but still sufficiently fast for aquatic eddy covariance measurements. The O2 optode signal was not sensitive to variations in water flow or light exposure. However, the response time was affected by the direction of the flow. When the sensor tip was exposed to a flow from the back rather than the front, the response time increased by 37%. The meter's internal signal processing time was determined to be ~ 0.05 s, a delay that can be corrected for during postprocessing. In order for the built‐in temperature correction to be accurate, the meter should always be submerged with the fiber‐optic sensor. In multiple 21–47 h field tests, the system recorded consistently high‐quality, low‐noise O2 flux data. Overall, the new meter is a powerful option for collecting robust aquatic eddy covariance data.

Benthic O2 uptake by coral gardens at the Condor seamount (Azores)

Using the non-invasive aquatic eddy covariance technique, we provide the first oxygen (O2) uptake rates from within coral gardens at the Condor seamount (Azores). To explore some of the key drivers of the benthic O2 demand, we obtained benthic images, quantified local hydrodynamics, and estimated phototrophic biomass and deposition dynamics with a long-term moored sediment trap. The coral gardens were dominated by the octocorals Viminella flagellum and Dentomuricea aff. meteor. Daily rates of O2 uptake within 3 targeted coral garden sites (203 to 206 m depth) ranged from 10.0 ± 0.88 to 18.8 ± 2.0 mmol m-2 d-1 (mean ± SE) and were up to 10 times higher than 2 local sandy reference sites within the seamount summit area. The overall mean O2 uptake rate for the garden (13.4 mmol m-2 d-1) was twice the global mean for sedimentary habitats at comparable depths. Combined with parallel ex situ incubations, the results suggest that the octocorals might contribute just ~5% of the observed O2 uptake rates. Deposition of particulate organic matter (POM) assessed by the sediment trap accounted for less than 10% of the O2 demand of the coral garden, implying a substantial POM supply circumventing the deployed traps. Our results expand the database for carbon turnover rates in cold-water coral habitats by including the first estimates from these largely understudied coral gardens.

Technical note: Novel triple O<sub>2</sub> sensor aquatic eddy covariance instrument with improved time shift correction reveals central role of microphytobenthos for carbon cycling in coral reef sands

Abstract. The aquatic eddy covariance technique stands out as a powerful method for benthic O2 flux measurements in shelf environments because it integrates effects of naturally varying drivers of the flux such as current flow and light. In conventional eddy covariance instruments, the time shift caused by spatial separation of the measuring locations of flow and O2 concentration can produce substantial flux errors that are difficult to correct. We here introduce a triple O2 sensor eddy covariance instrument (3OEC) that by instrument design eliminates these errors. This is achieved by positioning three O2 sensors around the flow measuring volume, which allows the O2 concentration to be calculated at the point of the current flow measurements. The new instrument was tested in an energetic coastal environment with highly permeable coral reef sands colonised by microphytobenthos. Parallel deployments of the 3OEC and a conventional eddy covariance system (2OEC) demonstrate that the new instrument produces more consistent fluxes with lower error margin. 3OEC fluxes in general were lower than 2OEC fluxes, and the nighttime fluxes recorded by the two instruments were statistically different. We attribute this to the elimination of uncertainties associated with the time shift correction. The deployments at ∼ 10 m water depth revealed high day- and nighttime O2 fluxes despite the relatively low organic content of the coarse sediment and overlying water. High light utilisation efficiency of the microphytobenthos and bottom currents increasing pore water exchange facilitated the high benthic production and coupled respiration. 3OEC measurements after sunset documented a gradual transfer of negative flux signals from the small turbulence generated at the sediment–water interface to the larger wave-dominated eddies of the overlying water column that still carried a positive flux signal, suggesting concurrent fluxes in opposite directions depending on eddy size and a memory effect of large eddies. The results demonstrate that the 3OEC can improve the precision of benthic flux measurements, including measurements in environments considered challenging for the eddy covariance technique, and thereby produce novel insights into the mechanisms that control flux. We consider the fluxes produced by this instrument for the permeable reef sands the most realistic achievable with present-day technology.

Technical note: Measurements and data analysis of sediment–water oxygen flux using a new dual-optode eddy covariance instrument

Abstract. Sediment–water oxygen fluxes are widely used as a proxy for organic carbon production and mineralization at the seafloor. In situ fluxes can be measured non-invasively with the aquatic eddy covariance technique, but a critical requirement is that the sensors of the instrument are able to correctly capture the high-frequency variations in dissolved oxygen concentration and vertical velocity. Even small changes in sensor characteristics during deployment as caused, e.g. by biofouling can result in erroneous flux data. Here we present a dual-optode eddy covariance instrument (2OEC) with two fast oxygen fibre sensors and document how erroneous flux interpretations and data loss can effectively be reduced by this hardware and a new data analysis approach. With deployments over a carbonate sandy sediment in the Florida Keys and comparison with parallel benthic advection chamber incubations, we demonstrate the improved data quality and data reliability facilitated by the instrument and associated data processing. Short-term changes in flux that are dubious in measurements with single oxygen sensor instruments can be confirmed or rejected with the 2OEC and in our deployments provided new insights into the temporal dynamics of benthic oxygen flux in permeable carbonate sands. Under steady conditions, representative benthic flux data can be generated with the 2OEC within a couple of hours, making this technique suitable for mapping sediment–water, intra-water column, or atmosphere–water fluxes.

High Net Primary Production of Mediterranean Seagrass (Posidonia oceanica) Meadows Determined With Aquatic Eddy Covariance

We report primary production and respiration of Posidonia oceanica meadows determined with the non-invasive aquatic eddy covariance technique. Oxygen fluxes were measured in late spring at an open-water meadow (300 m from shore), at a nearshore meadow (60 m from shore), and at an adjacent sand bed. Despite the oligotrophic environment, the meadows were highly productive and highly autotrophic. Net ecosystem production (54 to 119 mmol m-2 d-1) was about one-half of gross primary production. In adjacent sands, net primary production was a tenth- to a twentieth smaller (4.6 mmol m-2 d-1). Thus, P. oceanica meadows are an oasis of productivity in unproductive surroundings. During the night, dissolved oxygen was depleted in the open-water meadow. This caused a hysteresis where oxygen production in the late afternoon was greater than in the morning at the same irradiance. Therefore, for accurate measurements of diel primary production and respiration in this system, oxygen must be measured within the canopy. Generally, these measurements demonstrate that P. oceanica meadows fix substantially more carbon than they respire. This supports the high rate of organic carbon accumulation and export for which the ecosystem is known.

Estimating Respiration Rates and Secondary Production of Macrobenthic Communities Across Coastal Habitats with Contrasting Structural Biodiversity

A central goal of benthic ecology is to describe the pathways and quantities of energy and material flow in seafloor communities over different spatial and temporal scales. We examined the relative macrobenthic contribution to the seafloor metabolism by estimating respiration and secondary production based on seasonal measurements of macrofauna biomass across key coastal habitats of the Baltic Sea archipelago. Then, we compared the macrofauna estimates with estimates of overall seafloor gross primary production and respiration obtained from the same habitats using the aquatic eddy covariance technique. Estimates of macrobenthic respiration rates suggest habitat-specific macrofauna contribution (%) to the overall seafloor respiration ranked as follows: blue mussel reef (44.5) > seagrass meadow (25.6) > mixed meadow (24.1) > bare sand (17.8) > Fucus-bed (11.1). In terms of secondary production (g C m−2 y−1), our estimates suggest ranking of habitat value as follows: blue mussel reef (493.4) > seagrass meadow (278.5) > Fucus-bed (102.2) > mixed meadow (94.2) > bare sand (52.1). Our results suggest that approximately 12 and 10% of the overall soft-sediment metabolism translated into macrofauna respiration and secondary production, respectively. The hard-bottoms exemplified two end-points of the coastal metabolism, with the Fucus-bed as a high producer and active exporter of organic C (that is, net autotrophy), and the mussel reef as a high consumer and active recycler of organic C (that is, net heterotrophy). Using a combination of metrics of ecosystem functioning, such as respiration rates and secondary production, in combination with direct habitat-scale measurements of O2 fluxes, our study provides a quantitative assessment of the role of macrofauna for ecosystem functioning across heterogeneous coastal seascapes.

Benthic primary production and respiration of shallow rocky habitats: a case study from South Bay (Doumer Island, Western Antarctic Peninsula)

Rocky benthic communities are common in Antarctic coastal habitats; yet little is known about their carbon turnover rates. Here, we performed a broad survey of shallow ( < 65 m depth) rocky ice-scoured habitats of South Bay (Doumer Island, Western Antarctic Peninsula), combining (i) biodiversity assessments from benthic imaging, and (ii) in situ benthic dissolved oxygen (O2) exchange rates quantified by the aquatic eddy covariance technique. The 18 study sites revealed a gradual transition from macroalgae and coralline-dominated communities at ice-impacted depths (15–25 m; zone I) to large suspension feeders (e.g., sponges, bivalves) at depth zone II (25–40 m) and extensive suspension feeders at the deepest study location (zone III; 40–65 m). Gross primary production (GPP) in zone I was up to 70 mmol O2 m−2 d−1 and dark ecosystem respiration (ER) ranged from 15 to 90 mmol m−2 d−1. Zone II exhibited reduced GPP (average 1.1 mmol m−2 d−1) and ER rates from 6 to 36 mmol m−2 d−1, whereas aphotic zone III exhibited ER between 1 and 6 mmol m−2 d−1. Benthic ER exceeded GPP at all study sites, with daily net ecosystem metabolism (NEM) ranging from − 22 mmol m−2 d−1 at the shallow sites to − 4 mmol m−2 d−1 at 60 m. Similar NEM dynamics have been observed for hard-substrate Arctic habitats at comparable depths. Despite relatively high GPP during summer, coastal rocky habitats appear net heterotrophic. This is likely due to active drawdown of organic material by suspension-feeding communities that are key for biogeochemical and ecological functioning of high-latitude coastal ecosystems.

Oxygen metabolism of intertidal oyster reefs measured by aquatic eddy covariance

MEPS Marine Ecology Progress Series Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections MEPS 599:75-91 (2018) - DOI: https://doi.org/10.3354/meps12627 Oxygen metabolism of intertidal oyster reefs measured by aquatic eddy covariance Martin P. Volaric*, Peter Berg, Matthew A. Reidenbach Department of Environmental Sciences, University of Virginia, Charlottesville, Virginia 22904, USA *Corresponding author: mpv3a@virginia.edu ABSTRACT: Oyster reef restoration is pursued at numerous places worldwide, yet little is known about how ecosystem function changes as these reefs develop. In this study, we used the non-invasive aquatic eddy covariance technique to measure the in situ oxygen flux of 4 intertidal sites on the Virginia (USA) coast: a natural oyster reef, 2 restoration reefs, and a mudflat. Oyster densities of the 3 reefs were 350, 295, and 186 oysters m-2. Mean summer values of nighttime oxygen flux (FluxDARK) were -488, -428, -300, and -56 mmol m-2 d-1 over the natural reef, 2 restoration reefs, and mudflat, respectively. All 4 sites had smaller daytime vs. nighttime oxygen uptake, with mean summer differences between FluxDARK and FluxLIGHT of 360, 250, 239, and 27 mmol m-2 d-1. Light was an important short-term driver of daytime reef oxygen flux due to its effect on microalgal photosynthesis. All 3 oyster reefs were significantly heterotrophic, with summer net ecosystem metabolism values ranging from -157 to -298 mmol m-2 d-1. FluxDARK values were similar across the 3 reefs when normalized by density, with values between -1.8 and -2.3 mmol m-2 d-1 oyster-1. This study represents the most detailed measurements to date of in situ oyster reef oxygen flux, and shows that benthic microalgae can significantly impact reef oxygen dynamics. FluxDARK values scale with oyster density, and consequently can be used as a metric for reef restoration success. KEY WORDS: Crassostrea virginica · Oxygen flux · Net ecosystem metabolism · Production · Hydrodynamics · Benthic microalgae Full text in pdf format PreviousNextCite this article as: Volaric MP, Berg P, Reidenbach MA (2018) Oxygen metabolism of intertidal oyster reefs measured by aquatic eddy covariance. Mar Ecol Prog Ser 599:75-91. https://doi.org/10.3354/meps12627 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in MEPS Vol. 599. Online publication date: July 12, 2018 Print ISSN: 0171-8630; Online ISSN: 1616-1599 Copyright © 2018 Inter-Research.

Oxygen fluxes beneath Arctic land-fast ice and pack ice: towards estimates of ice productivity

Sea-ice ecosystems are among the most extensive of Earth’s habitats; yet its autotrophic and heterotrophic activities remain poorly constrained. We employed the in situ aquatic eddy-covariance (AEC) O2 flux method and laboratory incubation techniques (H14CO3−, [3H] thymidine and [3H] leucine) to assess productivity in Arctic sea-ice using different methods, in conditions ranging from land-fast ice during winter, to pack ice within the central Arctic Ocean during summer. Laboratory tracer measurements resolved rates of bacterial C demand of 0.003–0.166 mmol C m−2 day−1 and primary productivity rates of 0.008–0.125 mmol C m−2 day−1 for the different ice floes. Pack ice in the central Arctic Ocean was overall net autotrophic (0.002–0.063 mmol C m−2 day−1), whereas winter land-fast ice was net heterotrophic (− 0.155 mmol C m−2 day−1). AEC measurements resolved an uptake of O2 by the bottom-ice environment, from ~ − 2 mmol O2 m−2 day−1 under winter land-fast ice to~ − 6 mmol O2 m−2 day−1 under summer pack ice. Flux of O2-deplete meltwater and changes in water flow velocity masked potential biological-mediated activity. AEC estimates of primary productivity were only possible at one study location. Here, productivity rates of 1.3 ± 0.9 mmol O2 m−2 day−1, much larger than concurrent laboratory tracer estimates (0.03 mmol C m−2 day−1), indicate that ice algal production and its importance within the marine Arctic could be underestimated using traditional approaches. Given careful flux interpretation and with further development, the AEC technique represents a promising new tool for assessing oxygen dynamics and sea-ice productivity in ice-covered regions.

Surface gas exchange determined from an aquatic eddy covariance floating platform

AbstractWe present a new approach to quantifying air‐water flux and gas transfer velocity (k600) from underwater eddy covariance (EC) of dissolved oxygen. EC fluxes were measured 35 cm below the air‐water interface using an acoustic Doppler velocimeter (ADV) coupled with a fast‐responding dissolved oxygen optode probe, integrated on a floating platform. A micro‐electro‐mechanical system (MEMS)‐based inertial motion unit integrated with the ADV enabled compensation of measured velocities for platform motion and changing sensor orientation. Deployments of 16 h and 30 h were conducted under low to moderate wind conditions in Sage Lot Pond, a small estuarine embayment. We evaluate air‐sea flux parameterizations based on wind speed, current speed, and turbulent kinetic energy dissipation rate compared to our directly measured EC flux. Total kinetic energy was linearly correlated with EC‐determined k600, indicative of a more direct relationship to near surface turbulence compared to wind and current speed based parameterizations, which were subject to biases attributable to directional differences in fetch and low current speed. Our observations, which encompassed a period of low turbulent energy, suggest that existing parameterizations are not well constrained for these conditions. This new aquatic EC technique is highly advantageous for the determination of air‐water exchange, especially in dynamic near‐shore and inland systems. The system presented here has the potential for wide applicability for lake, riverine, and open‐ocean air‐water exchange and the results can be extrapolated for use with a wide range of biogeochemically relevant gases.

Continuous measurement of air–water gas exchange by underwater eddy covariance

Abstract. Exchange of gases, such as O2, CO2, and CH4, over the air–water interface is an important component in aquatic ecosystem studies, but exchange rates are typically measured or estimated with substantial uncertainties. This diminishes the precision of common ecosystem assessments associated with gas exchanges such as primary production, respiration, and greenhouse gas emission. Here, we used the aquatic eddy covariance technique – originally developed for benthic O2 flux measurements – right below the air–water interface (∼ 4 cm) to determine gas exchange rates and coefficients. Using an acoustic Doppler velocimeter and a fast-responding dual O2–temperature sensor mounted on a floating platform the 3-D water velocity, O2 concentration, and temperature were measured at high-speed (64 Hz). By combining these data, concurrent vertical fluxes of O2 and heat across the air–water interface were derived, and gas exchange coefficients were calculated from the former. Proof-of-concept deployments at different river sites gave standard gas exchange coefficients (k600) in the range of published values. A 40 h long deployment revealed a distinct diurnal pattern in air–water exchange of O2 that was controlled largely by physical processes (e.g., diurnal variations in air temperature and associated air–water heat fluxes) and not by biological activity (primary production and respiration). This physical control of gas exchange can be prevalent in lotic systems and adds uncertainty to assessments of biological activity that are based on measured water column O2 concentration changes. For example, in the 40 h deployment, there was near-constant river flow and insignificant winds – two main drivers of lotic gas exchange – but we found gas exchange coefficients that varied by several fold. This was presumably caused by the formation and erosion of vertical temperature–density gradients in the surface water driven by the heat flux into or out of the river that affected the turbulent mixing. This effect is unaccounted for in widely used empirical correlations for gas exchange coefficients and is another source of uncertainty in gas exchange estimates. The aquatic eddy covariance technique allows studies of air–water gas exchange processes and their controls at an unparalleled level of detail. A finding related to the new approach is that heat fluxes at the air–water interface can, contrary to those typically found in the benthic environment, be substantial and require correction of O2 sensor readings using high-speed parallel temperature measurements. Fast-responding O2 sensors are inherently sensitive to temperature changes, and if this correction is omitted, temperature fluctuations associated with the turbulent heat flux will mistakenly be recorded as O2 fluctuations and bias the O2 eddy flux calculation.

Non‐invasive flux Measurements at the Benthic Interface: The Aquatic Eddy Covariance Technique

The oxygen flux between benthic systems and the water above is a widely used proxy for benthic primary production and organic carbon mineralization and is one of the most measured variables in marine and freshwater research. This presentation reviews the relatively new aquatic eddy covariance technique for measuring this flux. Because the approach relies on measurements that integrate over a large area (multiple m2) without disturbing the benthic system or the natural drivers of flux, it allows non‐invasive studies of whole‐system benthic metabolism that are not possible with any other approach. After summarizing the basic principles of eddy covariance, the instruments used, and key steps in the data evaluation, the rapidly growing body of research utilizing aquatic eddy covariance is presented with examples of the new kinds of insights that can be attained. These examples focus on benthic surfaces where traditional flux methods are difficult or problematic to apply and include highly dynamic benthic environments such as coral reefs, Arctic sediments, dense seagrass meadows, and permeable sands. Finally, future applications of the technique, new areas for development, and avenues to disseminate data and outcomes between new and experienced users are recommended.

Benthic Oxygen Fluxes Measured by Eddy Covariance in Permeable Gulf of Mexico Shallow-Water Sands

Oxygen fluxes across the sediment–water interface reflect primary production and organic matter degradation in coastal sediments and thus provide data that can be used for assessing ecosystem function, carbon cycling and the response to coastal eutrophication. In this study, the aquatic eddy covariance technique was used to measure seafloor–water column oxygen fluxes at shallow coastal sites with highly permeable sandy sediment in the northeastern Gulf of Mexico for which oxygen flux data currently are lacking. Oxygen fluxes at wave-exposed Gulf sites were compared to those at protected Bay sites over a period of 4 years and covering the four seasons. A total of 17 daytime and 14 nighttime deployments, producing 408 flux measurements (14.5 min each), were conducted. Average annual oxygen release and uptake (mean ± standard error) were 191 ± 66 and −191 ± 45 mmol m−2 day−1 for the Gulf sites and 130 ± 57 and −152 ± 64 mmol m−2 day−1 for the Bay sites. Seasonal variation in oxygen flux was observed, with high rates typically occurring during spring and lower rates during summer. The ratio of average oxygen release to uptake at both sites was close to 1 (Bay: 0.9, Gulf: 1.0). Close responses of the flux to changes in light, temperature, bottom current velocity, and wave action (significant wave height) documented tight physical–biological, benthic–pelagic coupling. The increase of the sedimentary oxygen uptake with increasing temperature corresponded to a Q10 temperature coefficient of 1.4 ± 0.3. An increase in flow velocity resulted in increased oxygen uptake (by a factor of 1–6 for a doubling in flow), which is explained by the enhanced transport of organic matter and electron acceptors into the permeable sediment. Benthic photosynthetic production and oxygen release from the sediment was modulated by light intensity at the temporal scale (minutes) of the flux measurements. The fluxes measured in this study contribute to baseline data in a region with rapid coastal development and can be used in large-scale assessments and estimates of carbon transformations.

Stream oxygen flux and metabolism determined with the open water and aquatic eddy covariance techniques

AbstractWe quantified oxygen flux in a coastal stream in Virginia using a novel combination of the conventional open water technique and the aquatic eddy covariance technique. The latter has a smaller footprint (sediment surface area that contributes to the flux; ∼ 10 m2), allowing measurements to be made at multiple sites within the footprint of the open water technique (∼ 1000 m2). Sites included an unvegetated stream pool with cohesive sediment, a macrophyte bed with sandy sediment, and an unvegetated sand bed with rippled bedforms. Nighttime eddy covariance oxygen uptake was always smaller than uptake produced by the open water technique. At the pool and unvegetated sand bed sites, nighttime eddy covariance uptake was 20‐fold smaller than open water uptake. At the macrophyte bed site, gross primary production quantified with the two techniques was similar but eddy covariance uptake was 2.4‐fold smaller. The difference in oxygen uptake between eddy covariance and open water techniques could not be accounted for by uncertainties in the gas transfer velocity but could be accounted for by anoxic groundwater inflow through stream banks outside of the eddy covariance footprint. Nighttime oxygen uptake was also measured with eddy covariance in a tidal freshwater part of the stream, where pore space in the sandy sediment near the sediment–water interface was flushed with stream water at peak water velocities. As a result of this advective hyporheic exchange, nighttime oxygen flux increased fourfold with a doubling of water velocity.