Application In Live Cell Imaging Research Articles

Label-Free Interference Imaging of Intracellular Trafficking.

ConspectusIntracellular cargo trafficking is a highly regulated process responsible for transporting vital cellular components to their designated destinations. This intricate journey has been a central focus of cellular biology for many years. Early investigations leaned heavily on biochemical and genetic approaches, offering valuable insight into molecular mechanisms of cellular trafficking. However, while informative, these methods lack the capacity to capture the dynamic nature of intracellular trafficking. The advent of fluorescent protein tagging techniques transformed our ability to monitor the complete lifecycle of intracellular cargos, advancing our understanding. Yet, a central question remains: How do these cargos manage to navigate through traffic challenges, such as congestion, within the crowded cellular environment? Fluorescence-based imaging, though valuable, has inherent limitations when it comes to addressing the aforementioned question. It is prone to photobleaching, making long-term live-cell imaging challenging. Furthermore, they render unlabeled cellular constituents invisible, thereby missing critical environmental information. Notably, the unlabeled majority likely exerts a significant influence on the observed behavior of labeled molecules. These considerations underscore the necessity of developing complementary label-free imaging methods to overcome the limitations of fluorescence imaging or to integrate them synergistically.In this Account, we outline how label-free interference-based imaging has the potential to revolutionize the study of intracellular traffic by offering unprecedented levels of detail. We begin with a brief introduction to our previous findings in live-cell research enabled by interferometric scattering (iSCAT) microscopy, showcasing its aptitude and adeptness in elucidating intricate nanoscale intracellular structures. As we delved deeper into our exploration, we succeeded in the label-free visualization of the entire lifespan of nanoscale protein complexes known as nascent adhesions (NAs) and the dynamic events associated with adhesions within living cells. Our continuous efforts have led to the development of Dynamic Scattering-particle Localization Interference Microscopy (DySLIM), a generalized concept of cargo-localization iSCAT (CL-iSCAT). This label-free, high-speed imaging method, armed with iSCAT detection sensitivity, empowers us to capture quantitative and biophysical insights into cargo transport, providing a realistic view of the intricate nanoscale logistics occurring within living cells. Our in vivo studies demonstrate that intracellular cargos regularly contend with substantial traffic within the crowded cellular environment. Simultaneously, they employ inherent strategies for efficient cargo transport, such as collective migration and hitchhiking, to enhance overall transport rates─intriguingly paralleling the principle and practice of urban traffic management. We also highlight the synergistic benefits of combining DySLIM with chemical-selective fluorescent methods. This Account concludes with a "Conclusions and Outlook" section, outlining promising directions for future research and developments, with a particular emphasis on the functional application of iSCAT live-cell imaging. We aim to inspire further investigation into the efficient transport strategies employed by cells to surmount transportation challenges, shedding light on their significance in cellular phenomena.

Turn-on fluorescent probe for ultrafast detection of phosgene in the environment and household bleach; its applications in live cell imaging

Phosgene is a vital industrial gas that might substantially imperil public safety in the case of an accident or terrorist attack due to its extreme toxicity and history of use as a chemical warfare agent. Herein we built a simple photoinduced electron transfer-intramolecular charge transfer based turn-on fluorescent probe for ultrafast detection of phosgene within ≤ 3 s. The probe provides low detection limit (0.01 ppm) with distinct colour and fluorescence changes only in the presence of phosgene. With the help of a readily available colour smartphone app, the probe-loaded paper strips allowed for the direct visualization and quantitative measurement of phosgene vapour. Using the probe-coated strips to detect phosgene that evolved from common household bleach. Finally, the probe was utilized to detect phosgene in living cells.

A Ratiometric Fluorescent Detection Platform Using G‐CDs@[Ru(bpy)3]2+ for the Specific Detection of Hypochlorite and Live Cell Imaging

AbstractHypochlorite (ClO−), an essential reactive oxygen species (ROS) in physiological processes, is identified to be closely connected with oxidative stress and related diseases. Meanwhile, ClO− is a commonly‐used disinfector for water treatment, and in public places, under acidic conditions, it's easily decomposed into hypertoxic chlorine gas. Since the strong oxidizing property of ClO−, many oxidizing agents may disturb the ClO− detection. Specific and accurate detection of ClO− with superior sensitivity is a challenge. In this work, a sensing platform for rapid, sensitive, and specific ClO− detection is constructed using green fluorescent carbon dots (G‐CDs), with a linear detection range of 0.5–11 µm and a detection limit of 0.233 µm. Moreover, introducing a red fluorescent tripyridinium ruthenium ([Ru(bpy)3]2+) as a reference, a ratiometric fluorescence nanoprobe G‐CDs@[Ru(bpy)3]2+ is prepared and shows favorable intracellular imaging of exogenous and endogenous ClO−. With G‐CDs@[Ru(bpy)3]2+‐based test paper microarrays and a color recognition APP, a smartphone‐based sensing system for point‐of‐care testing of ClO− is also fabricated. In summary, this work proposed a versatile and economical smartphone‐based sensing system that featured reliability and simplicity, and suggested its potential applications in environmental water quality monitoring and live cell imaging.

A pyridyl-benzimidazole based ruthenium(II) complex as optical sensor: Targeted cyanide detection and live cell imaging applications

An extreme toxicity of cyanide (CN−) ion in diverse environmental media has encouraged significant attention for scheming well-organised molecular probes for its selective and sensitive detection. Keeping in mind, we present here a monometallic Ru(II) complex (Ru-1) based on 2-(pyridin-2-yl)-1H-benzo[d]imidazole moiety acting as a highly selective luminescent probe for CN− recognition in pure water. Besides, Ru-1 also acted as an efficient sensor for F−, AcO− and H2PO4− ions along with CN− when acetonitrile was chosen as solvent system. The binding constant (Kb) and detection limit (LoD) for CN− have been depicted as 3.05 × 106 M−1 and 12.8 nM, respectively, in water. The close proximity of N-H site with Ru(II) centre along with its remarkable acidity were identified as mainly responsible for the high selectivity of Ru-1 toward CN− in water. Job’s plot and DFT analyses were carried out to support the anion binding mechanism. Furthermore, the time-resolved fluorescence (TRF) spectroscopy was performed to assess the cyanide-induced emission lifetime change of Ru-1 in aqueous medium. In order to investigate applied potential, the probe Ru-1 was notably developed into paper-based strips that could readily detect CN− ion in mM range via naked eye under 365 nm light illumination, and also adequately employed to detect CN− in human breast cancer MCF-7 cell lines and natural food sources (such as apple seeds and sprouting potatoes).

Synthesis and Photophysical Characterization of a pH-Sensitive Quadracyclic Uridine (qU) Analogue.

Fluorescent base analogues (FBAs) have become useful tools for applications in biophysical chemistry, chemical biology, live-cell imaging, and RNA therapeutics. Herein, two synthetic routes towards a novel FBA of uracil named qU (quadracyclic uracil/uridine) are described. The qU nucleobase bears a tetracyclic fused ring system and is designed to allow for specific Watson-Crick base pairing with adenine. We find that qU absorbs light in the visible region of the spectrum and emits brightly with a quantum yield of 27 % and a dual-band character in a wide pH range. With evidence, among other things, from fluorescence lifetime measurements we suggest that this dual emission feature results from an excited-state proton transfer (ESPT) process. Furthermore, we find that both absorption and emission of qU are highly sensitive to pH. The high brightness in combination with excitation in the visible and pH responsiveness makes qU an interesting native-like nucleic acid label in spectroscopy and microscopy applications in, for example, the field of mRNA and antisense oligonucleotide (ASO) therapeutics.

Recent advances in Si-rhodamine-based fluorescent probes for live-cell imaging.

Fluorescence imaging is a powerful technique for visualizing biological events in living samples with high temporal and spatial resolution. Fluorescent probes emitting far-red to near infrared (NIR) fluorescence are particularly advantageous for in vivo imaging due to their high tissue permeability and low autofluorescence, as well as their suitability for multicolor imaging. Among the far-red to NIR fluorophores, Si-rhodamine is one of the most practical fluorophores for the development of tailor-made NIR fluorescent probes because of the relative ease of synthesis of various derivatives, the unique intramolecular spirocyclization behavior, and the relatively high water solubility and high photostability of the probes. This review summarizes these features of Si-rhodamines and presents recent advances in the synthesis and applications of far-red to NIR fluorescent probes based on Si-rhodamines, focusing on live-cell imaging applications such as fluorogenic probes, super-resolution imaging and dye-protein hybrid-based indicators.

Host-guest interactions of coumarin-based 1,2-pyrazole using analytical and computational methods: Paper strip-based detection, live cell imaging, logic gates and keypad lock applications

A novel Coumarin-based 1,2-pyrazole, HCPyTSC is synthesised and characterized. The chemosensor has been shown to have efficient colourimetric and fluorescence sensing capabilities for the quick and selective detection of fluoride and copper ions. At 376 and 430 nm, the HCPyTSC exhibits selective sensing for Cu2+ and F− ions. By examining the natural bond orbital (NBO) analysis and the potential energy curve (PES) of the ground state for the function of the C–H bond, it has been determined from the theoretical study at hand that the deprotonation was taken from the ‘CH’ proton of the pyrazole ring. For F− and Cu2+, the HCPyTSC detection limits were 4.62 nM and 15.36 nM, respectively. Similarly, the binding constants (Kb) for F− and Cu2+ ions in acetonitrile medium were found to be 2.06 × 105 M−1 and 1.88 × 105 M−1. Chemosensor HCPyTSC with and without F− and Cu2+ ions have an emission and absorption response that can imitate a variety of logic gates, including the AND, XOR, and OR gates. Additionally, a paper-based sensor strip with the HCPyTSC was created for use in practical, flexible F− sensing applications. The paper-based sensor was more effective in detecting F− than other anions. The effectiveness of HCPyTSC for the selective detection of F− in living cells as well as its cell permeability were examined using live-cell imaging in T24 cells.

Ortho-Vanillin-based fluorescent sensor with ESIPT characteristics for selective detection of Al(III) in aqueous solutions and its application for plant and live-cell imaging

A new acylhydrazone fluorescent sensor (VN62) with excited intramolecular proton transfer (ESIPT) characteristics has been designed and synthesized through condensation of o-vanillin with 6‑hydroxy-2-naphthoic hydrazide for selective detection of Al3+ in aqueous medium. The structure of the VN62 sensor was characterized by various techniques such as 1H and 13C NMR and mass spectrometry, and also confirmed by single crystal X-ray diffraction. The VN62 sensor showed a remarkable fluorescence enhancement response to Al3+ over a broad pH range in a nearly 100 % aqueous solution without interference by most of tested metal ions and anions. Through fluorescence titration and a Job's plot experiment, the binding stoichiometry of VN62 with Al3+ was found to be 1:1. The limit of detection of VN62 toward Al3+ was determined as 39.6 nM and the binding constant was 2.66 × 104 M−1. Comprehensive analyses by HR-MS, 1H NMR and density functional theory calculations illustrated that the VN62 sensor coordinated with Al3+, forming a stable trigonal bipyramid structure complex, which blocked the ESIPT and photoinduced electron transfer processes and simultaneously promoted an intramolecular charge transfer process, thereby leading to strong cyan fluorescence. Moreover, VN62-loaded test strips were successfully applied for rapid and visual detection of Al3+. Furthermore, the VN62 sensor was used to visualize Al3+in plants and live cells. The results indicated that the VN62 sensor has great potential for detecting Al3+in biological systems.

Characterization of the far-red fluorescent probe MitoView 633 for dynamic mitochondrial membrane potential measurement.

Introduction: MitoView 633, a far-red fluorescent dye, exhibits the ability to accumulate within mitochondria in a membrane potential-dependent manner, as described by the Nernst equation. This characteristic renders it a promising candidate for bioenergetics studies, particularly as a robust indicator of mitochondrial membrane potential (DYm). Despite its great potential, its utility in live cell imaging has not been well characterized. Methods: This study seeks to characterize the spectral properties of MitoView 633 in live cells and evaluate its mitochondrial staining, resistance to photobleaching, and dynamics during DYm depolarization. The co-staining and imaging of MitoView 633 with other fluorophores such as MitoSOX Red and Fluo-4 AM were also examined in cardiomyocytes using confocal microscopy. Results and Discussion: Spectrum analysis showed that MitoView 633 emission could be detected at 660 ± 50nm, and exhibited superior thermal stability compared to tetramethylrhodamine methyl ester (TMRM), a commonly used DYm indicator, which emits at 605 ± 25nm. Confocal imaging unequivocally illustrated MitoView 633's specific localization within the mitochondrial matrix, corroborated by its colocalization with MitoTracker Green, a well-established mitochondrial marker. Furthermore, our investigation revealed that MitoView 633 exhibited minimal photobleaching at the recommended in vitro concentrations. Additionally, the dynamics of MitoView 633 fluoresce during carbonyl cyanide-p-trifluoromethoxyphenylhydrazone (FCCP, a mitochondrial uncoupler)-induced DYm depolarization mirrored that of TMRM. Importantly, MitoView 633 demonstrated compatibility with co-staining alongside MitoSOX Red and Fluo-4 AM, enabling concurrent monitoring of DYm, mitochondrial ROS, and cytosolic Ca2+ in intact cells. Conclusion: These findings collectively underscore MitoView 633 as a superb molecular probe for the singular or combined assessment of DYm and other indicators in live cell imaging applications.

A pyridoxal based bio-compatible fluorometric chemosensor for recognition of Zn2+ ions: Theoretical approaches and application in live cell imaging

A simple pyridoxal-based chemosensor (HL = 4-(((furan-2-ylmethyl)imino)methyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol) was synthesized which selectively detects Zn2+ ions in HEPES buffer at pH = 7.4 (MeOH:H2O, 9:1, (v/v)) among other competitive metal ions. Around 10-fold increase in fluorescence intensity was seen at 472 nm after excition at 390 nm. HL displays blue fluorescence with a large stoke′s shift (∼80 nm) in presence of Zn2+ ions. A 1:1 binding stoichiometry between HL and metal ions (Zn2+) and the PET-OFF-CHEF-ON mechanism had been established by different spectroscopic techniques and theoretical studies. Low LOD value of the chemosensor towards Zn2+ (lower than the WHO's guideline of 76.5 µM) and strong binding constant (K = 1.54 × 105 M−1) suggest the applicability of HL towards biological cell imaging studies under physiological conditions. MTT assay was carried out to evaluate the toxicity of probe HL up to maximum concentrations with PC3 cell line.

Benchmarking of novel green fluorescent proteins for the quantification of protein oligomerization in living cells.

Protein-protein-interactions play an important role in many cellular functions. Quantitative non-invasive techniques are applied in living cells to evaluate such interactions, thereby providing a broader understanding of complex biological processes. Fluorescence fluctuation spectroscopy describes a group of quantitative microscopy approaches for the characterization of molecular interactions at single cell resolution. Through the obtained molecular brightness, it is possible to determine the oligomeric state of proteins. This is usually achieved by fusing fluorescent proteins (FPs) to the protein of interest. Recently, the number of novel green FPs has increased, with consequent improvements to the quality of fluctuation-based measurements. The photophysical behavior of FPs is influenced by multiple factors (including photobleaching, protonation-induced "blinking" and long-lived dark states). Assessing these factors is critical for selecting the appropriate fluorescent tag for live cell imaging applications. In this work, we focus on novel green FPs that are extensively used in live cell imaging. A systematic performance comparison of several green FPs in living cells under different pH conditions using Number & Brightness (N&B) analysis and scanning fluorescence correlation spectroscopy was performed. Our results show that the new FP Gamillus exhibits higher brightness at the cost of lower photostability and fluorescence probability (pf), especially at lower pH. mGreenLantern, on the other hand, thanks to a very high pf, is best suited for multimerization quantification at neutral pH. At lower pH, mEGFP remains apparently the best choice for multimerization investigation. These guidelines provide the information needed to plan quantitative fluorescence microscopy involving these FPs, both for general imaging or for protein-protein-interactions quantification via fluorescence fluctuation-based methods.

Fluorescent Coumarin-based Probe for Detection of Biological Thiols

Abstract: Nature-derived thiols such as cysteine, homocysteine, and reduced glutathione play diverse and important roles in both plant and animal cells. In plants, they maintain redox homeostasis and affect photosynthesis and signal transduction processes. In animals, changes in the levels of biothiols have been linked to cardiovascular disease, Alzheimer's disease, neuropsychiatric disorders, or stroke. The detection of biothiols in biological samples is, therefore, very important. For this purpose, rapid, sensitive, and non-invasive methods for their sensing in living cells are highly desirable. : This perspective reviews the past five years of advances in coumarin fluorescent probes for biothiol detection. The design of the probes, the mechanisms of thiol detection, and the applications in live cell imaging are presented. The classification of probes based on the coumarin backbone was made on the basis of the mode of their interactions with the analyte.

Easily synthesizable molecular probe for the nanomolar level detection of Cd2+ in near aqueous media: Theoretical investigations and live cell imaging

The present investigation highlights a quinoline-based small molecule probe (DEQ) for the detection of Cd2+ among other metal ions in near-aqueous media. The probe DEQ and its Cd2+ complex (DEQ-Cd) have been synthesized and characterized by all possible spectroscopic methods. The weakly emissive DEQ showed its strong emission in the presence of Cd2+, which is attributed to the photoinduced electron transfer (PET) along with the chelation-enhanced fluorescence (CHEF) mechanism. The 1:1 binding mode between ligand and Cd2+ is confirmed by single crystal XRD analysis, which is further supported by Job’s plot and HRMS. The detection limit of the probe to recognize Cd2+ was found to be as low as 89 nM. Furthermore, DEQ can act as a reversible fluorescence probe with the off-on-off mechanism by the alternative addition of Cd2+ and EDTA. DFT and TD-DFT studies exposed the proposed mechanism after Cd2+ insertion and the obtained results for electronic spectra are in line with the experimental results. The response towards pH was quite interesting and allowed us to study its application in live cell imaging. With all the positive results, the proposed ligand DEQ can be used as a potential probe for the detection of Cd2+ in real-life applications.

Monoclinic yttrium oxide quantum dots surface modified by biotin for bioimaging applications

Semiconductor nanoparticles or quantum dots are one of the central topics of interest in material science research due to its size dependent physical and chemical characteristics and applications in different areas from display to biomedical fields. This work reports the first-time synthesis of biotin functionalized monoclinic yttrium oxide quantum dots at low temperature and its application in live cell imaging. The presence of biotin was confirmed through FTIR measurements. HRTEM analysis confirmed the formation of small spherical quantum dots with an average size of 3.8 nm. Zeta potential measurements gave a negative surface charge of -26.9 mV confirming colloidal stability. The quantum dots show sharp absorption in the short UV region and PL experiments delivered defect related intense blue fluorescence emission. The material is nontoxic to both normal (L929) and cancer (MCF 7) cells and the live cell imaging experiments performed on MCF 7 cells show specific binding to the cells and presented bright fluorescence emission from the cells thus confirming the applicability of the material in both display industry and cancer cell imaging.

Fluorine-tuned dual-state luminogens for versatile applications in mechanofluorochromism, trace water analysis, and live cell imaging

Dual-state luminogens (DSEgens) are organic luminescent molecules that exhibit strong emissions in both molecularly dispersed and aggregated states. The introduction of fluorine into organic conjugates has been shown to influence their photophysical properties, but its effect on DSEgens remains unexplored. Herein, we synthesized three naphthalimide-arylimidazole luminogens, namely NIBH, NIBPF, and NIBOF, with fluorinated or nonfluorinated phenyl groups on the pyrrole-like nitrogen. We systematically investigated their photophysical properties using spectroscopic studies, theoretical calculations, and single crystallography. Our results demonstrate that fluorine substitution in DSEgens leads to shortened electronic conjugation, highly twisted molecular conformations, and loose three-dimensional packing arrangements. Consequently, fluorinated DSEgens, such as NIBPF and NIBOF, exhibited a significant spectral blueshift and more pronounced mechanofluorochromic properties compared to the non-fluorinated NIBH. Intriguingly, NIBPF with a para-position fluorine substituent displayed relatively redshifted and stronger emission in tetrahydrofuran solutions, while showing a blueshifted and lower emission in the solid state compared to NIBOF, which has an ortho-position fluorine substituent. These findings confirm the efficacy of fluorine as a small substituent to tune the photophysical properties of DSEgens in both dilute solutions and the solid state. Furthermore, the three bright DSEgens were employed for mechanofluorochromism, trace water analysis, and live-cell imaging applications.

Light-sheet autofluorescence lifetime imaging with a single-photon avalanche diode array.

Fluorescence lifetime imaging microscopy (FLIM) of the metabolic co-enzyme nicotinamide adenine dinucleotide (phosphate) [NAD(P)H] is a popular method to monitor single-cell metabolism within unperturbed, living 3D systems. However, FLIM of NAD(P)H has not been performed in a light-sheet geometry, which is advantageous for rapid imaging of cells within live 3D samples. We aim to design, validate, and demonstrate a proof-of-concept light-sheet system for NAD(P)H FLIM. A single-photon avalanche diode camera was integrated into a light-sheet microscope to achieve optical sectioning and limit out-of-focus contributions for NAD(P)H FLIM of single cells. An NAD(P)H light-sheet FLIM system was built and validated with fluorescence lifetime standards and with time-course imaging of metabolic perturbations in pancreas cancer cells with 10s integration times. NAD(P)H light-sheet FLIM in vivo was demonstrated with live neutrophil imaging in a larval zebrafish tail wound also with 10s integration times. Finally, the theoretical and practical imaging speeds for NAD(P)H FLIM were compared across laser scanning and light-sheet geometries, indicating a to acquisition speed advantage for the light sheet compared to the laser scanning geometry. FLIM of NAD(P)H is feasible in a light-sheet geometry and is attractive for 3D live cell imaging applications, such as monitoring immune cell metabolism and migration within an organism.

Fabrication of a New Coumarin Based Fluorescent "turn-on" Probe for Distinct and Sequential Recognition of Al3+ and F- Along With Its Application in Live Cell Imaging.

A new coumarin based fluorescent switch PCEH is fabricated which displays high selective sensing towards Al3+ among other metal cations at physiological pH. On gradual addition of Al3+, PCEH shows a brilliant "turn-on" emission enhancement in MeOH/H2O (4/1, v/v) solution. This new fluorescent switch is proven to be a reversible probe by gradual addition of F- into the PCEH-Al3+ solution. Detection limit as well as binding constant values are calculated to be in the order of 10-9M and 104M-1 respectively. We have also explored its potential as a biomarker in the application of live cell imaging using breast cancer cells (MDA-MB-231 cell).

Sensing of organophosphorus pesticides by fluorescent complexes based on purine-hydrazone receptor and copper (II) and its application in living-cells imaging

In this study, we used purine hydrazone derivatives and coumarin aldehyde to synthesize a novel fluorescent sensor (EDTP) by Schiff base reaction, which exhibited significant selective fluorescence quenching of Cu2+, and a distinct change from brilliant yellow to red is present along with the solution color. The detection limit of EDTP for Cu2+ was 109.52 nM. Job's plot experiment, density flooding theory (DFT) and 1H NMR titration experiments revealed the possible binding mechanism of EDTP to Cu2+, the probe EDTP could achieve highly detection of Cu2+ through forming a 1:1 complex. Additionally, this new fluorescent sensor EDTP-Cu2+ can be further applied in the rapid and selective detection of pesticide residues in solutions. When the EDTP-Cu2+ system was subsequently exposed to organophosphorus pesticides (glyphosate and glufosinate-ammonium), it was observed that the fluorescence was recovered and accompanied by a red to yellow color change. This may be attributed to the strong chelation of glyphosate and glufosinate-ammonium with Cu2+, leading to the dissociation of the EDTP-Cu2+ system and thus triggering the fluorescence recovery effect. The detection limits of the EDTP-Cu2+ system is 2.48 nM for glyphosate and 17.23 nM for glufosinate-ammonium, respectively. Finally, the developed sensor system has been successfully utilized image glyphosate and glufosinate-ammonium fluorescence in living cells. Purine fluorescence probes are a potential fluorescent probe for the detection of metal ions and pesticides due to their good characteristics. This study opens up a new way for the detection of fluorescent probes in pesticides.

Live-Cell SOFI Correlation with SMLM and AFM Imaging.

Standard optical imaging is diffraction-limited and lacks the resolving power to visualize many of the organelles and proteins found within the cell. The advent of super-resolution techniques overcame this barrier, enabling observation of subcellular structures down to tens of nanometers in size; however these techniques require or are typically applied to fixed samples. This raises the question of how well a fixed-cell image represents the system prior to fixation. Here we present the addition of live-cell Super-Resolution Optical Fluctuation Imaging (SOFI) to a previously reported correlative process using Single Molecule Localization Microscopy (SMLM) and Atomic Force Microscopy (AFM). SOFI was used with fluorescent proteins and low laser power to observe cellular ultrastructure in live COS-7 cells. SOFI-SMLM-AFM of microtubules showed minimal changes to the microtubule network in the 20 min between live-cell SOFI and fixation. Microtubule diameters were also analyzed through all microscopies; SOFI found diameters of 249 ± 68 nm and SMLM was 71 ± 33 nm. AFM height measurements found microtubules to protrude 26 ± 13 nm above the surrounding cellular material. The correlation of SMLM and AFM was extended to two-color SMLM to image both microtubules and actin. Two target SOFI was performed with various fluorescent protein combinations. rsGreen1-rsKAME, rsGreen1-Dronpa, and ffDronpaF-rsKAME fluorescent protein combinations were determined to be suitable for two target SOFI imaging. This correlative application of super-resolution live-cell and fixed-cell imaging revealed minimal artifacts created for the imaged target structures through the sample preparation procedure and emphasizes the power of correlative microscopy.

N1-aryl-2-(trifluoromethyl)benzo[b][1,8]naphthyridin-4(1H)-one as convenient platform to design high photostable and long-lived dyad fluorophore with potential application in live-cell imaging

The design of long-lived and high photostable fluorescent probes with high quantum yields (QYs) is of great significance for biological applications. It favors the monitoring of individual molecular events for extended period of time without side-effect consequences into cell. From a series of N1-aryl-2-(trifluoromethyl)benzo[b][1,8]naphthyridin-4(1H)-ones, we found that their photophysical properties were successfully tuned through the modulation of the intramolecular charge-transfer (ICT), generating the largest lifetimes, highest QYs and photostability for those fluorophores with a high CT character. The ICT was primarily controlled by incorporation of methoxy group at 7-position and secondarily by electron-deficient N1-arene at 1-position of benzo[b] [1,8] naphthyridin-4(1H)-one core. The trifluoromethyl at 2-position seems to strength the ICT because it reduced gap energies and increase dipole moments in their derivatives compared to 2-methyl or -hydrogen analogues. Importantly, from the 7-methoxy derivatives, two high photo-stable (15- to 17-fold more than fluorescein) and long-lived (9.75–14.20 ns) fluorophores with acceptable QYs and HOMO-LUMOs were identified. In particular, the fluorophore 3k showed a low cytotoxicity in J774.1A macrophage, pH insensibility and appropriate lipophilicity, which in combination with their good photophysical properties favored the application of the 7-methoxy dyes for bioimaging, giving blue-fluorescent macrophages in relatively short time. Then, the N1-aryl-2-(trifluoromethyl)benzo[b] [1,8] naphthyridin-4(1H)-one by its molecular extension and planarity emerges as an interesting platform to generate long-lived and highly photostable dyes and, the key point is to favor the strength of the internal ICT mechanism through the incorporation of appropriate donor (D) and acceptor (A) groups along the D-A chain.