The exoskeleton of arthropods undergoes reformation at every molting. Accordingly, external morphology can metamorphose through molting. In some crustaceans, the function of appendages is modified through ontogeny. These morphological modifications require accordant modification of the correlation between different body parts because the morphological function depends on the combined correlation between different parts. In the case of crustacean morphology, exoskeleton and muscles are correlated to each other. The functional morphology of the fifth limb of cypridoid ostracods transforms from "walking leg + mouthparts (+ possibly respiratory parts)" to "mouthparts + respiratory parts + grasping hook (in males only)" through ontogeny. In this study, the three-dimensional structures of the exoskeleton and muscular systems were observed by confocal laser-scanning microscopy in some species of suborder Cypridocopina. The muscular system is reportedly not changed by the ontogeny of appendages in females, but it does change in males. Furthermore, regional cell proliferation, which was detected previously, represented the causal factor of exoskeletal modification. I therefore conclude that the enlarged endite in the female fifth limb is produced by exoskeletal modification based on regional cell proliferation, rather than by a change in the muscular system. In contrast, modification in the male requires a change in the muscular system in addition to exoskeletal modification.