Background: In north India, pigeon pea experiences low temperature stress during winter months (December-January). Information’s regarding cold stress and its impact on morphological characters, physio-biochemical processes and yield attributes in pigeon pea crop is very limited. Keeping the above facts in to consideration, the experiment was formulated to screen suitable genotypes of pigeon pea tolerant to cold stress based on morpho-physiological traits and ability to set flower and pods and yield performance. Methods: Field experiments with 98 genotypes of pigeon pea were conducted in augmented design including checks with all recommended cultural practices in 2018-19 and 2019-20 at New Research Farm, ICAR-IIPR, Kanpur. Morphological, biochemical and yield parameters were recoded periodically. Result: Based on the reaction of pigeon pea genotypes against the exposer of cold stress in terms of flower/pod drop and flower/pod retention, cold injury at the apical meristems and post regeneration of apical portion, the genotypes like IPA 15F, Dhule-D, JBT46/27, IPACT-6, IPACT-14, IPAC-1-17, IPACT-68, IPACT-22 showed greater than 90% flower/pod drop and retained only 0-10% flowers/pods, greater than 90% apical damage and less than 10% recovery of apical portion and were considered highly sensitive to cold stress. Genotypes namely MA-3, IPA 9F, ICP 15-9-1, VKG 27/161, H-26, ICPL 7035, LRG-30, PBT/SSL 2/73, KPL 1034-31, IPA 15-15, KPL 34, ICP 2073, IPACT-5, IPAB 10-66, IPACT-10, IPACT-11, IPAHT-26, IPACT-15, IPAD 2-8, IPACT-16, IPAD-8, IPACT-17, IPAHT-43, IPACT-21 showed greater than 80% flower/pod drop and retained 10-20% flower/pods, greater than 80%apical damage and less than 20% recovery of apical portion and considered moderately susceptible to cold stress. Genotypes NDA-2, MAL-13, ICP-2275, IPACT-2 showed around 20-40% flower/pod drop and have retained 60-80% flowers/pods, less than 20% apical damage and greater than 80% recovery of apical portion were considered as the highly tolerant to cold stress. The nitrogen balance index, chlorophyll and flavonols showed higher values in tolerant group whereas lower in susceptible group. The average yield/plant of pigeon pea genotypes tolerant to cold stress is considerably higher than the susceptible group of pigeon pea genotypes.