Publisher Summary This chapter discusses the specific technical considerations for performing flow cytometric analysis when the original materials are whole tissues and embryos, and present some selected applications. The general technical basis and a wide review of applications of flow cytometry are beyond the scope of this chapter. Flow cytometry's main achievement, the rapid quantification of large numbers of single events (particles or cells), has generally limited its application to cell lines or primary cells growing in isolation, such as blood cells. It is currently one of the essential techniques in the field of immunology. However, whole organs and organisms, constituted by various heterogeneous populations of cells tightly adherent to each other, present the particular problem of having to be dissociated into a single-cell suspension representative of the tissue or organism of origin. This is requisite to apply the fruitful flow cytometry technique to other fields of biology, such as developmental biology. Flow cytometric analysis permits an accurate and rapid quantification of the level of expression of antigens in single cells. In this way, it is possible to define cell populations with different sets of markers.
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