Nitrogen cycling is one of the most important biogeochemical processes on Earth, and denitrification, anammox and DNRA processes are important nitrogen cycling processes in estuarine ecosystems. However, due to the large input of anthropogenic nitrogen sources, a large number of environmental problems have now occurred in the estuary. But the global patterns and controlling factors of denitrification, anammox and DNRA rates in wetland marine ecosystems are not yet known. We reached our conclusions through a global synthesis of 546 observation sites from 78 peer-reviewed papers: The three rates were generally higher in areas near wetlands than in coastal areas. The rate of denitrification was highest in the subtropical region the seasonal variability was not significant; and TOC was the main factor controlling denitrification. The rate of anammox was significantly higher in the subtropical region than in the tropical and boreal zones, and the seasonal variability was significant; and at the same time, TN was the main driver of the anammox rate of the wetland ocean. DNRA rates were significantly higher in the tropics than in the subtropics and temperate zones; and the main driver of DNRA rates was temperature. Nitrogen cycle functional genes also had an indirect effect on their rates. With NH4 + -N significantly affecting nirK abundance and TN significantly affecting the gene abundance of nirS; TOC and TN had a greater effect on hzo abundance, which indirectly affected anammox rates; for DNRA, C/N significantly affects the gene abundance of nrfA, which indirectly affects the DNRA rate. Therefore, the findings of this study indicate that physicochemical indicators about N and climatic characteristics have a profound effect on the nitrogen cycling process, which provides a good feedback for studying the role of denitrification and provides a positive impact on global climate and environmental governance.