Increasing attention has been attracted to the dynamic performance and safety of advanced performance predictive control systems of the next-generation aeroengine. The latest research demonstrates that Subspace-based Improved Model Predictive Control (SIMPC) can overcome the difficulty in solving the predictive model in MPC/NMPC applications. However, applying constant design parameters cannot maintain consistent control effects in all states. Meanwhile, the designed system relies too much on sensor-measured data, and thus it is difficult to thoroughly validate the safety of the system because of its high complexity. This means that any potential hardware/software faults will endanger the engine. Therefore, this paper first presents a novel nonlinear mapping relationship to adaptively tune the tracking weight online with the change of Power Lever Angle (PLA) and real-time relative tracking error. Thus, without introducing additional design parameters, an Adaptive Tracking Weight-based SIMPC (ATW-SIMPC) controller is designed to improve the control performance in all operating states effectively. Then, a Primary/Backup Hybrid Control (PBHC) strategy with the ATW-SIMPC controller as the primary system and the traditional speed (Nf) controller as the backup system is proposed to ensure safety. The designed affiliated switching controller and the real-time monitor therein can be used to realize reasonable and smooth switching between primary/backup systems, so as to avoid bump transition. The PBHC system switches to the Nf controller when the ATW-SIMPC controller is wrong because of potential hardware/software faults; otherwise, the ATW-SIMPC controller keeps acting on the engine. The main results prove that the ATW-SIMPC controller with the optimal nonlinear mapping relationship, compared with the existing SIMPC controller, uplifts the dynamic control performance by 32% and reduces overshoots to an allowable limit, resulting in a better control effect in full state. The comparison results consistently indicate that the PBHC can guarantee engine safety in occurrence of hardware/software faults, such as sensor/onboard adaptive model faults. The approach proposed is applicable to the design of a model-based engine intelligent control system.