Natural Bond Orbital Analysis Research Articles

Ferrier Glycosylation Mediated by the TEMPO Oxoammonium Cation.

The TEMPO oxoammonium cation has been proven to be both an efficient oxidizing reagent and an electrophilic substrate frequently found in organic reactions. Here, we report that this versatile chemical reagent can also be used as an efficient promoter for C- and N-glycosylation reactions through a Ferrier rearrangement with moderate to high yields. This unprecedented reactivity is explained in terms of a Lewis acid activation of glycal by TEMPO+ forming a type of glycal-TEMPO+ mesomeric structure, which occurs through an extended vinylogous hyperconjugation toward the π*(O═N+) orbital [LP(O1) → π*(C1═C2), π*(C1═C2) → σ*(C3-O3), and LP(O6) → π*(O═N+)]. This enables the formation of the respective Ferrier glycosyl cation, which is trapped by various nucleophiles. The extended hyperconjugation (or double hyperconjugation) toward the π*(O═N+) orbital, which confers the Lewis acid character of the TEMPO cation, was supported by natural bond orbital analysis at the M06-2X/6-311+G** level of theory.

Molecular Interactions Between Hexanal Schiff Bases and Boron Nanocages: A DFT Approach

This study explores the interactions between hexanal Schiff bases and a B12N12 nanocage, employing density functional theory (DFT) calculations to deepen our understanding of noncovalent bonds. Hexanal, a key component in tea, plays a vital role in prolonging the shelf-life of various plant-based products by inhibiting phospholipase-D. Our research initially focused on synthesizing Schiff bases through the condensation of hexanal with nucleobases and an amino acid. We then conducted a series of DFT calculations, including geometry optimizations, frontier molecular orbital (FMO), natural bond orbital (NBO) and noncovalent interactions (NCI) assays, using Gaussian 16 and ORCA 5.0.2 software packages. This study reveals that hexanal Schiff bases form stable complexes with the B12N12 nanocage, exhibiting notable dative coordinate bonding. The FMO analysis indicates a significant energy gap variation among the complexes, with CSB2 showing the lowest energy gap, hinting at its high reactivity. In the LED assay, CSB2 demonstrates the lowest decomposition energy, highlighting its potential stability. The AIMD simulations provide insights into the electronic motions of these complexes, underscoring their dynamic nature. Our NBO analysis offers a comprehensive view of the electron distribution within these complexes, emphasizing the significance of nitrogen and boron atoms in the bonding process. The NCI assay sheds light on the predominant van der Waals and steric interactions contributing to the stability of the complexes. This investigation provides a detailed account of the NCI between hexanal Schiff bases and the B12N12 nanocage. The findings not only contribute to the field of noncovalent bonding in inorganic- fullerene structures but also open avenues for future applications in material science and molecular engineering.

Insights into 5-fluorouracil anti–cancer drug encapsulation within the pristine and palladium-doped carbon, silicon-carbide, and germanium-carbide nanotubes: A DFT investigation for advanced nanomedicine applications

In this study, we investigated the interaction and binding properties of 5-Fluorouracil (5-FU), an anti-cancer drug, encapsulated within pristine and palladium-doped carbon, silicon-carbide, and germanium-carbide nanotubes (CNT, SiCNT, GeCNT). Using density functional theory (DFT), we conducted a comprehensive analysis at both aqueous and gas phases. This included geometrical, structural, electrical, bonding, and thermodynamic properties, optimized geometries, adsorption energies, quantum molecular descriptors, frontier molecular orbitals, and topological parameters at the M06-2X level of theory. Our findings indicate that Pd-doping enhances the encapsulation capabilities of nanotubes, strengthening interactions with 5-FU and improving water solubility. Calculations of recovery time required for drug release suggest that Pd-doped nanotubes effectively control the release of 5-FU. Notably, the decapsulation time of 5-FU from of Pd-doped nanotubes was longer in the gas phase than in aqueous conditions. Using the quantum theory of atoms in molecules (QTAIM) method, we investigated intermolecular interactions and critical bonding points. Natural bond orbital (NBO) analysis revealed enhanced stabilization of the 5-FU molecule post-encapsulation, with charge transfer primarily directed from nanotubes to the 5-FU. Hirshfeld surface analysis highlighted that hydrogen bonds between 5-FU active sites and nanotubes are crucial in encapsulation and fixation. Reduced Density Gradient (RDG) analysis confirmed Pd-doping as a primary source of strong attractive interactions in 5-FU/Pd-doped nanotube complexes compared to pristine nanotubes.

DFT Study of Nanotubes as the Drug Delivery Vehicles for an Anticancer Drug

Abstract: Chemicals and poisons in the body interfere with the cell cycle and inhibit the growth of cancer cells. In this way, the function of chemicals in the body is controlled by taking anti-cancer drugs. Due to the degradability and compatibility of carbon nanotubes and boron nitride with the environment, they can act as suitable drug carriers for the transfer of anticancer drugs and deliver the drugs to the target cells. In the current work, the encapsulation of Formestane (FMS) anticancer drug into the carbon (CNT) and boron nitride (BNNT) (8,8) nanotubes was investigated for the first time using the density functional theory: B3LYP/3-21G* and the natural bond orbital analysis in the gas phase. Using natural bond orbital analysis, the charge transfer between FMS drug and CNT and BNNT nanotubes (8,8)/ FMS (BNNT/FMS) complexes were explored. Based on the results obtained from the calculation of encapsulation energy, it was found that the adsorption process was favorable. The interaction effects of FMS drug and CNT and BNNT (8,8) nanotubes on the natural bond orbital charge, the chemical shift parameters, and electronic properties were also evaluated. This study revealed that CNT and BNNT (8,8) nanotubes can be a suitable carrier for FMS drug delivery. The ultraviolet-visible spectra of the FMS drug, the CNT and BNNT (8,8), and the BNNT/FMS complexes were computed using time-dependent density functional theory (DFT: B3LYP) calculations.

Density Functional Theory and Spectroscopic Analysis of Stigmasterol from Garcinia wightii: Deciphering its Inhibitory Potential against Drug-Resistant Tuberculosis via Insilico Molecular Docking and Molecular Dynamics Simulations

This study investigates the molecular structure and electronic properties of stigmasterol, isolated from Garcinia wightii, using density functional theory (DFT) alongside experimental techniques including FT-IR, FT-Raman, UV–Vis, 1H and 13C NMR spectroscopy. Theoretical predictions are compared with experimental results, facilitated by vibrational energy distribution analysis for unambiguous vibrational wavenumber assignments. Natural bond orbital analyses reveal donor-acceptor bond energies and electron densities, while Fukui functions identify reactive sites susceptible to electrophilic and nucleophilic attacks. Electronic properties are further explored through various analyses, unveiling reactive surface sites. Non-covalent interactions are examined using reduced density gradient analysis. Assessment of absorption, distribution, metabolism, and excretion attributes aids in drug discovery efforts. Molecular docking studies against 20 target proteins for antitubercular screening show a stable glide score of -9.52 kcal/mol for the protein 4FDO (Mycobacterium tuberculosis DprE1 in complex with CT319). Molecular dynamics simulations over 100 ns indicate the stability of the ligand-protein complex, suggesting its potential as an antituberculosis agent. Stigmasterol's structural, vibrational, electronic, and topological properties are thoroughly investigated, revealing its ring skeleton with a flexible isooctyl side chain, adhering to C1 point group symmetry. Steric and stereo electronic interactions play crucial roles in conformation and binding to target proteins. Theoretical and experimental analyses align, confirming the compound's bioactive properties. This comprehensive investigation underscores stigmasterol's potential as a tuberculosis treatment option, providing valuable insights into its structural characteristics and therapeutic possibilities.

From 'halogen' to 'tetrel' bonds: matrix isolation IR spectroscopic and quantum mechanical studies of the effect of central atom substitution in donor tetrahalogens on binary complex formation with formic acid.

Binary complex formation between silicon tetrachloride (SiCl4) and formic acid (FA) has been observed in an argon matrix environment. Such complex formation manifests as spectral shifts in signature vibrations of the latter, namely the νCO, νC-O and νO-H vibrations. Quantum chemical calculations reveal that the most stable conformers of the complex involve predominantly the tetrel bond, which has been defined in existing literature as a variant of the "σ-hole" interactions. Here, regions of positive electrostatic potential on the tetrahedral face of SiCl4 act as electrophilic centers (σ-hole) to which the nucleophilic carbonyl group of FA is able to bind. Atoms-in-molecules analysis predicts a bond critical point along the non-covalent contact between the tetrel atom Si and the carbonyl oxygen on FA, corroborating the presence of the tetrel bond. The hyperconjugative interaction parameters at the binding interface obtained from Natural Bond Orbital (NBO) analysis are also consistent with such observations. Although apparently similar to SiCl4, there are noticeable differences in the binding preferences of the lower homologue carbon tetrachloride (CCl4). The binary complexes of the latter with the same FA acceptor molecule have been previously shown to involve halogen bonded, rather than tetrel bonded interactions (Banerjee and Bhattacharya, Spectrochim. Acta Mol. and Biomol. Spectrosc., 2021, 250, 119355). Such variations in the nature of non-covalent interactions of these tetrahalogens are attributed to differences in the distribution of electronic charge density surrounding the central tetrel atom, as obtained from mappings of their electrostatic potential surfaces. Our combined experimental and theoretical findings therefore provide direct evidence of the growing propensity of tetrel atoms to engage in tetrel bonding as we move lower down Group 14, and re-assert the reluctance of the smaller and more electronegative carbon atom to serve as a tetrel bond participant.

Computational aspects of DFT, HOMO-LUMO, PED, molecular docking and basic characterisations of Octadec-9-Enoic Acid (C18H34O2)

Finding a few potential ‘green’ inhibitors has been a long-term goal because these products that are derived from plants enable prescription drug costs reduced, side effects minimised and biodegradable. Known by its common name, Hybanthusenneaspermus (L.) F. Muell, which is a member of the Violaceae family, is a herb or shrub found worldwide in tropical and subtropical climates. Knowing the applicability of H. enneaspermus for the treatment of a variety of acute or chronic diseases with a diverse nature of phytoconstituents will be made easier with the information provided in this comprehensive article. The majority of the information in this research article was gathered from different scientific sources that focused on H. enneaspermus research. Plant extraction, optimised geometry, thorough vibrational assignment, and characterisation of the fundamental vibrational modes of Octadec-9-Enoic Acid were conducted using experimental FT-IR and UV-Vis data in addition to quantum chemistry research. The actual vibrational data were compared to the wavenumbers computed theoretically for the chemical's optimal shape using DFT/B3LYP gradient calculations with the 6-311G ++ (d,p) basis set. A computation has been performed utilising the energy gap between HOMO and LUMO. Intramolecular interactions (NBO), molecular electrostatic potential (MEP) at a specific point p (x,y,z), atomic charge values, NMR & UV-vis computation, and molecular docking studies with protein-ligand interactions were all interpreted using natural bond orbital analysis.

Synthesis, crystal structure, and DFT studies of NHC mediated Pd-PEPPSI complex: Application for Suzuki reaction

A novel air and moisture resistant Pd-PEPPSI (pyridine-enhanced precatalyst preparation, stabilization, and initiation) complex was synthesized via the reaction of benzimidazolium salt, PdCl2, KBr, K2CO3, and pyridine. The structure was characterized by spectroscopic methods such as 1H and 13C NMR, FT-IR, UV–vis. and single X-ray diffraction techniques. In order to evaluate the synthesized Pd complex in a detailed manner in terms of structural, bonding, electronic, and thermodynamic characteristics, DFT-based calculations were carried out at the B3LYP/6-311++G (d, p)/LANL2TZ theory level. Natural bond orbital (NBO) analysis was implemented to provide more insights about the possible donor-acceptor interactions and types of hybridization. Also, TD-DFT calculations were performed to rationalize the nature of the observed electronic transitions. The complex showed high catalytic activity in the Suzuki–Miyaura cross coupling of aryl chlorides with phenylboronic acid. Aryl chlorides bearing either electron- donating or withdrawing substituents afforded a wide range of biaryl derivatives that were isolated in the range of 55–97 % yields (7 examples). The reactions were carried out at very low catalyst loading (0.25 mol%) in the presence of air using a green water-based solvent (ipr:H2O/ 1:3). The palladium complex was found to be efficient for the coupling of aryl chlorides with arylboronic acids under aerobic conditions, affording the corresponding biaryls in high yields.

Change in nonlinear optical response of C24 nanocage upon doping with lithium based superalkalis

Density functional theory (DFT) calculations are used to analyze the change in nonlinear optical (NLO) response, electronic and geometric properties of the Li based superalkalis doped C24 nanocage. It was observed that the adsorption of Li4N, Li3O and Li2F superalkalis on C24 nanocage results in thermodynamically stable isomers (A-F). The energy gap between the highest occupied and the lowest unoccupied molecular orbitals (GH-L) is reduced after superalkalis doping on carbon (C24) nanocage. Density of states spectra depict the strong contribution of superalkalis in HOMOs of the considered complexes. Natural bond orbital (NBO) charge analysis showed that the charge is being transferred from superalkali toward C24 nanocage. The values of polarizability (α o ) and hyperpolarizability (β o ) showed that doping of superalkalis on C24 has a significant effect on its NLO response, resulting in a considerable increase in values of α o and β o . Li4N@C24 isomer E showed the highest β o value of 6470.74 au. Time dependent density functional theory (TD-DFT) calculations are implemented to analyze the absorption spectra. This research provides unique and highly efficient superalkalis doped C24 isomers for their applications in future electronic devices.

Tetrel bond affects the self-assembly of acetylcholine and its analogues and is an ancillary interaction in protein binding.

The -N+(CH3)3 residue is present in acetylcholine (ACh) and in many of its analogues which are used as selective ACh agonist or antagonists for human therapy. The X-ray structures of four ACh derivatives show the presence of short and linear contacts between the C atoms of -N+(CH3)3 groups and lone pair possessing atoms. These contacts can be rationalized as tetrel bonds (TtBs) thanks to their geometric features. Interrogation of the Protein Data Bank suggests that similar -N+‒C···nucleophile contacts affect the details of the binding of ACh and its derivatives to proteins. Quantum theory of atoms in molecules, noncovalent interaction plot, and natural bond orbital analyses consistently confirm that the -N+‒C···nucleophile contacts observed in small molecule crystals and in substrate/protein complexes are attractive in nature and can be rationalized as TtBs. TtBs involving methyl groups of the -N+(CH3)3 moiety can be proposed as a new item in the palette of interactions allowing the compounds containing this pharmacophoric unit to bind to their target protein and/or to express their biological/pharmacological properties.

Position of substituents directs the electron transfer properties of entatic state complexes: new insights from guanidine-quinoline copper complexes.

In a previous study, we showed that the properties and the ability as an entatic state model of copper guanidine quinoline complexes are significantly influenced by a methyl or methyl ester substituent in the 2-position. To prove the importance of the 2-position of the substituent, two novel guanidine quinoline ligands with a methyl or methyl ester substituent in the 4-position and the corresponding copper complexes were synthesized and characterized in this study. The influence of the substituent position on the copper complexes was investigated with various experimental and theoretical methods. The molecular structures of the copper complexes were examined in the solid state by single-crystal X-ray diffraction (SCXRD) and by density functional theory (DFT) calculations indicating a strong dependency on the substituent position compared to the systems substituted in the 2-position from the previous study. Further, the significantly different influence on the donor properties in dependency on the substituent position was analyzed with natural bond orbital (NBO) calculations. By the determination of the redox potentials, the impact on the electrochemical stabilization was examined. With regard to further previously analyzed guanidine quinoline copper complexes, the electrochemical stabilization was correlated with the charge-transfer energies calculated by NBO analysis and ground state energies, revealing the substituent influence and enabling a comparatively easy and accurate possibility for the theoretical calculation of the relative redox potential. Finally, the electron transfer properties were quantified by determining the electron self-exchange rates via the Marcus theory and by theoretical calculation of the reorganization energies via Nelsen's four-point method. The results gave important insights into the dependency between the ability of the copper complexes as entatic state model and the type and position of the substituent.

Molecular structure, spectroscopic (FT-IR, NMR and UV–Vis), electronic properties, molecular docking, and molecular dynamics studies on novel thiazolidinone derivative: A potent breast cancer drug

This study details the synthesis, characterization, and comprehensive computational analysis of a novel (R)-camphor-based thiazolidinone derivative. The structural integrity of the synthesized compound was confirmed using 1H- and 13CNMR spectroscopy as well as HRMS. Theoretical vibrational modes were successfully assigned and matched well with the observed FT-IR spectrum. Simulated NMR values were in excellent agreement with experimental chemical shifts, showing maximum deviations of less than 1.5 ppm for 1H and 4 ppm for 13C. UV–vis spectroscopy revealed n→π* and π→π* transitions in thiazolidinone, with intermolecular charge transfer (ICT) corroborated by Frontier Molecular Orbital (FMO), density of states (DOS), and Natural Bond Orbital (NBO) analyses. Molecular docking studies indicated that thiazolidinone exhibited strong inhibitory activity against the breast cancer target protein 6HQO, which was further validated by molecular dynamics simulations, confirming the stability and accuracy of the docking results.

Computational screening of metalloporphyrin catalysts for the activation of carbon dioxide

Electrocatalytic CO2 reduction (eCO2R) to value-added chemicals offers a promising route for carbon capture and utilization. Metalloporphyrin (M-POR) is a class of catalysts for eCO2R that has drawn attention due to its tuneable electronic and structural properties. This work presents a computational screening, based on density functional theory calculations, of one of the key steps in the eCO2R: the adsorption of CO2 on 110 M-PORs with varying peripheral ligands, metal centres, and oxidation states, to understand how these factors can influence CO2 activation. A set of criteria was used to shortlist M-PORs based on their ability to lengthen the C–O bond, bend the O–C–O angle, bind CO2, and donate charge from the metal of the M-POR to the carbon of CO2. 16 systems were selected for their potential to activate CO2. These systems predominantly have the electron configuration of the metal centre in the d[6] and d[7] configurations. Natural bond orbital analysis revealed the impact of electron-withdrawing groups in the system, which increases orbital splitting and, consequently, lowers the ability of the M-POR to activate CO2. Second-order perturbation theory analysis confirms that the presence of electron-donating groups in the ligand structure enhances CO2 activation. This work demonstrates the interconnected effect of peripheral ligands, metal centres, and oxidation states in M-PORs on their ability to adsorb and activate CO2, thereby establishing structure-activity relationships within M-PORs.

Anion-Carbonyl Interactions.

Presented herein is the exploration of a novel non-covalent anion-carbonyl (X-···C═O) interaction using aromatic imides as receptors and halides as lone pair donors. Combined theoretical calculations and experimental methods including 13C NMR, IR, and crystallographic analyses were performed to provide the physical origin and experimental evidence of anion-carbonyl interactions. The EDA analysis (energy decomposition analysis) based on DFT calculation indicates that electrostatic terms are the dominant contributions for the binding energy while electron delocalization also significantly contributes alongside the electrostatic attraction. Orbital interaction (n → π*) involving the delocalization of halide lone pairs on the carbonyl antibonding orbitals was visualized with NBO (Natural Bond Orbital) analysis. 13C NMR and IR spectra demonstrated upfield chemical shifts and red-shift frequency of hosts upon the addition of halides, reflecting the effect of orbital overlap between the halide lone pairs and π* of carbonyl (n → π* contribution). The anion-carbonyl interactions were directly revealed by X-ray structural analysis of anion and benzene triimide complexes.

Heterometallic Metal-Organic Frameworks for Enhanced Hydrogen Generation from Syngas: A Density Functional Theory Approach.

Although methane poses environmental concerns, it is employed in hydrogen production processes such as steam-methane reforming (SMR), which has an issue of by-products released. Initiatives are being pursued to address CO and CO2emissions using carbon capture methods, with the goal of minimizing environmental harm while improving pure hydrogen generation from syngas. In this study, porous coordination network (PCN-250) has been studied for its selective adsorption property towards CO, CO2and H2O as syngas mixture to obtain pure hydrogen. For this purpose, the trimetallic cluster node Fe2M (where Fe2represents the 3+ oxidation state and M is Cr(II), Mn(II), Fe(II), Co(II), Ni(II), and Zn(II)) has been considered. Fe(III) in combination with metal atoms like Cr(II), Co(II), or Ni(II) has been found to exhibit enhanced adsorption properties towards CO, CO2and H2O. The molecule with the strongest interaction was found to be H2O over Fe(III)2Zn(II) cluster and weakest interaction was found between H2and Fe(III)2Ni(II). Charge transfer, natural bond orbital (NBO) and spin density analyses reveal the electronic structural properties of this combination, leading to enhanced adsorption of CO and CO2.

Quantum Computational and Spectroscopic Investigation of 3-aminosalicylic Acid.

Quantum chemical calculations of3-aminosalicylic acid (3ASA) (monomer and dimer forms) have been performed using DFT and TD-DFT theories with B3LYP/6-311 G(d,p) functional level in the ground and excited states. Using TD-DFT with IEF-PCM model, the electronic spectra of 3ASA in solvents were computed and correlated with the experimental data. The theoretically calculated absorption and emission maxima of 3ASA (monomer) are observed in the range of 343- 347nm (S0 → S1 transition) and 429- 448nm (S1 → S0 transition), respectively. The natural bond orbital (NBO) analysis shows that charge transfer interaction contributes significantly to stabilize the molecular system. In the case of dimer, hydrogen bonding plays a dominant role in stabilizing the molecular framework. Additionally, the obtained nonlinear optical (NLO) properties: polarizability (13.86 × 10-24 e.s.u for monomer and 29.46 × 10-24 e.s.u. for dimer), first-order hyperpolarizability (4.21 × 10-30 e.s.u for monomer and 0.18 × 10-30 e.s.u for dimer) and second-order hyperpolarizability (7.44 × 10-36 e.s.u. for monomer and 14.32 × 10-36 e.s.u. for dimer) were found to be larger than those of standard organic compounds suggesting that 3ASA has a significant NLO character for optoelectronic applications. The NLO properties of dimer may differ from monomer due to dimerization. Further, the radiative lifetime, light harvesting efficiency and band gap energy were calculated, and proposed that 3ASA may be useful in photovoltaics and wide bandgap power devices. HIGHLIGHTS: • DFT and TD-DFT theories were employed to calculate structural and molecular properties of 3ASA (monomer and dimer) in ground and excited states. • HOMO-LUMO study shows monomer and dimer of 3ASA are good reactive. • NBO analysis reflects that charge transfer interactions stabilized the 3ASA molecule. • Electronic absorption/emission spectra in solvents calculated by IEF-PCM/TD-DFT method correlate with experimental results. • Calculated NLO parameters suggested that 3ASA is a potential candidate for NLO material.

Styrene monomer as potential material for design of new optoelectronic and nonlinear optical polymers: density functional theory study

Using density functional theory, we have studied the intrinsic properties of styrene. First, we determine the optimized structures, structural parameters and thermodynamic properties to make our simulations more realistic to experimental results and check the stability. Second, we investigate optoelectronic, electronic and global descriptors, transport properties of holes and electrons, natural bond orbital analysis, absorption and fluorescence properties. Finally, we study nonlinear optical (NLO) properties: first- and second-order hyperpolarizability, second and third-order optical susceptibilities, hyper-Rayleigh scattering hyperpolarizability, electro-optical Pockel effect, direct current Kerr effects and quadratic refractive index. The bandgap energy E g = 5.146 eV and dielectric constant ε r = 3.062 show that styrene is a good insulator with an average electric field value of 4.43 × 10 8 Vm −1 . Thermodynamic findings show that our molecule is thermodynamically and chemically stable. Electron and hole reorganization energies of 0.393 and 0.295 eV, respectively, show that styrene is more favourable to hole transport than electron transport. Styrene is transparent with linear refractive index n = 1.750 and quadratic n 2 = 1.748 × 10 −20 m 2 W −1 . At the NLO, styrene has a non-zero value of β H R S , which confirms the existence of first-order NLO activity. Globally the study shows that the styrene monomer is suitable for the architecture design of new polymer materials for NLO applications and optoelectronic by functionalization.

Menadione sodium bisulfite as an efficient anti-corrosion additive for mild steel in acid corrosion: Electrochemical, surface morphological and theoretical studies

The corrosion inhibition behavior of Menadione Sodium Bisulfite (MSB) in 1.0 M HCl medium was evaluated using weight loss, electrochemical techniques (Tafel polarisation and Electrochemical impedance spectra), surface analysis (SEM and EDX), Density Functional Theory (DFT), Noncovalent interaction- Reduced Density Gradient (NCI-RDG) and Monte Carlo (MC) simulation techniques. Weight loss measurement showed that as inhibitor concentration increased, the corrosion rate decreased which means that a protective film formed on the metal surface. At 300 ppm, the inhibitor showed a maximum inhibition efficiency of 89.7 %. Tafel polarisation studies indicate that the inhibitor is mixed-type in nature. The inhibitor adsorption on the mild steel is the best fit for the Langmuir isotherm model. As the weak interaction of sodium and oxygen in the inhibitor molecules, the inhibitor exhibits two distinct equilibrium behaviors. (i) inhibitor with sodium (solid-state) and inhibitor without sodium (in liquid-state). These two behaviors were theoretically investigated using DFT and MD simulation studies. The inhibitor and metal interaction is further supported using these theoretical studies. The electron population of the inhibitor was analyzed using molecular electrostatic potential, NCI-RDG, Fukui function, and natural bond orbital analysis. These studies further give an understating of the inhibitor and metal interactions.

Interdisciplinary insights into (1′R,3S,3′R)-1'-(4-chlorobenzoyl)-5′,6′,7′,7a′-tetrahydro-1′H dispiro[indoline-3,2′-pyrrolizine-3′,3″-indoline]-2,2″-dione: Structural, electronic, and molecular dynamics perspectives

In the field of heterocyclic compounds, the spiro-pyrrolidine and oxindole ring systems are highly esteemed due to their distinctive structural scaffold that is present in numerous pharmacologically significant alkaloids. Interdisciplinary research has been increasingly important in recent years for deciphering the intricate characteristics and behaviors of novel organic compounds. The current work uses quantum chemical computational techniques to study the structural stability and nonlinear optical (NLO) activity of (1′R,3S,3′R)-1'-(4-chlorobenzoyl)-5′,6′,7′,7a′-tetrahydro-1′H dispiro[indoline-3,2′-pyrrolizine-3′,3″-indoline]-2,2″-dione (DSOIP-Cl). The study combines molecular biology, computational chemistry, and theoretical chemistry knowledge to create a comprehensive picture of this fascinating organic compound. This study employed the density functional theory (DFT) B3LYP method to compute the electronic properties and molecular geometry. The basis set for the computations was 6–311++G(d,p). The IEFPCM solvation method is used to investigate the behavior of the head compound in different solvents. Understanding the interaction between organic compounds and the solvent phase is crucial because the majority of interactions in biological systems occur in solution. UV–Vis spectral analysis of the molecule in different solvents is performed using the TD-DFT method. The compound exhibits more excellent absorption in polar solvents such as water, while its absorption is lower in the gaseous phase. Assessing NLO properties revealed optoelectronics applications. DSOIP-Cl has 5.25 times the first-order hyperpolarizability of urea. Different solvents have higher dipole moments and first-order hyperpolarizability than gases. To identify the inter- and intramolecular charge transfer interactions, intermolecular hydrogen bonding, and hyperconjugative interactions that stabilize the structure, natural bond orbital (NBO) analysis is performed. A stabilization energy of 9.99 kcal/mol is obtained for π(C32–C33) → σ*(C33–C34) due to strong intramolecular hyperconjugative interactions. Frontier molecular orbital (FMO) analysis helps determine the global reactivity parameters and the charge transfer interaction. The van der Waals interaction and steric effect within the molecule are identified using RDG analysis. The pharmacokinetic properties, adherence to drug-likeness criteria, and easily controllable synthesis process were evaluated through ADME analysis, establishing it as an up-and-coming candidate for subsequent drug development. Ultimately, to determine the biological activity and the ability of the title compound to inhibit aldose reductase, a series of computational techniques are employed, including molecular docking study, molecular dynamic (MD) simulation, and MM-PBSA binding energy calculations. −7.86 kcal/mol was reported as the docking score. Hydrophobic interactions play an essential role in the efficiency of protein-ligand binding. The remarkable energetic contribution of DSOIP-Cl to the MM-PBSA binding dynamics highlights its unique association with the AR protein, with a binding energy of −79.81 kJ/mol.

Unveiling spectroscopic behaviour and molecular features (DFT studies) of Exemestane-maleic acid cocrystal as model multicomponent system

The present study aimed to investigate the Exemestane - maleic acid (Ex-Mal) cocrystal using Fourier-transform Raman (FT-Raman), Fourier-transform Infrared (FT-IR), Powder X-ray Diffraction (PXRD) and Differential Scanning Calorimeter (DSC) experimental techniques and quantum chemical calculations. Exemestane (Ex) is an irreversible aromatase inhibitor, clinically used for the treatment of postmenopausal women having primary or advanced breast cancer. Maleic acid (Mal), a dicarboxylic acid is found in many vegetables and fruits and is used as a food additive and sweetener. Solution crystallization of Ex and Mal was done in the generation of Ex-Mal cocrystal (1:1). PXRD and DSC analysis confirmed the successful generation of Ex-Mal Cocrystal. Intermolecular hydrogen bonding (O4-H12···O13 & C8-O3···H36) also suggested the formation of a multi-component system, Ex-Mal cocrystal (1:1), as the respective modes shifted in the vibrational (Raman & IR) spectra of cocrystal than the Ex. Further, the quantum theory of atoms in molecules (QTAIM) has been done to analyze the strength and nature of inter-/intra molecular hydrogen bonding. Natural bond orbital (NBO) analysis was performed to check the stabilization energy of the system. The frontier molecular orbital (FMO) analysis predicted that Ex-Mal cocrystal is more reactive and less stable than Ex. Molecular electrostatic potential (MEP) surface showed that electrophilic (C16-H36)/(O4-H12), and nucleophilic (C8=O3)/(C17=O13) reactive groups in Ex/Mal and Mal/Ex, respectively, neutralized after the formation of Ex-Mal cocrystal, confirming the presence of hydrogen bonding interactions (C16-H36∙∙∙O3=C8) and (C17=O13∙∙∙H12-O4). Molar Refractivity (MR) was calculated to check the drug-likeness behaviours of Ex-mal cocrystal. This study provided a comparison of experimental and theoretical results to understand the hydrogen bonding interactions and structural activity of the system.