For cave sites located within the seasonal fluctuation zone of groundwater, obtaining a comprehensive understanding of the hydrogeological conditions and hydrochemical environment is of utmost importance in assessing the preservation of cultural deposits. However, due to the heterogeneity of karst development, the hydrochemical environment of the overburden karst water-bearing unit may exhibit complex variations. In this study, the characteristics of the water environment in a foot cave system and its surrounding aquifer were investigated at the Zengpiyan site, employing hydrochemistry, hydrogen and oxygen isotope analysis, as well as sulfate isotope analysis, in conjunction with the hydrogeological background. Based on the exposure of the karst cave and the groundwater flow conditions, the water-bearing medium was categorized into five types. The aquifer exhibited either an oxidation or reduction condition, with a distinct "dissolved oxygen hole" observed in the saturated zone of the cave site. Ion concentration analysis revealed that the groundwater was influenced by the prior accumulation of cinders in the upstream region, leading to sulfate contamination within the foot cave system. However, during the groundwater movement from upstream to downstream, the attenuation rate of pollutants displayed significant variations. Notably, the sulfate content was unusually low within the site cave. Hydrogen and oxygen isotopes provided insights into the differing circulation and movement velocities of groundwater within the local environment. Additionally, sulfate isotopes confirmed the sources of sulfate and the occurrence of bacterial sulfate reduction within the site cave. Consequently, an environmental zoning classification was established based on these analyses. Although the concentration of dissolved ions appears low in the anoxic area, it does not imply a diminished environmental risk. Under reducing conditions, these pollutants can be converted into more aggressive gases, posing a substantial threat to the preservation environment of cave sites. Therefore, sufficient attention should be given to this aspect in order to ensure adequate protection.