Analysis Of Microsatellite Loci Research Articles

Polyandry and sperm competition in two traumatically inseminating species of Strepsiptera (Insecta)

Polyandry, the practice of females mating with multiple males, is a strategy found in many insect groups. Whether it increases the likelihood of receiving beneficial genes from male partners and other potential benefits for females is controversial. Strepsiptera are generally considered monandrous, but in a few species females have been observed copulating serially with multiple males. Here we show that the offspring of a single female can have multiple fathers in two Strepsiptera species: Stylops ovinae (Stylopidae) and Xenos vesparum (Xenidae). We studied female polyandry in natural populations of these two species by analysis of polymorphic microsatellite loci. Our results showed that several fathers can be involved in both species, in some cases up to four. Mating experiments with S. ovinae have shown that the first male to mates with a given female contributes to a higher percentage of the offspring than subsequent males. In X. vesparum, however, we found no significant correlation between mating duration and offspring contribution. The prolonged copulation observed in S. ovinae may have the advantage of reducing competition with sperm from other males. Our results show that monandry may not be the general pattern of reproduction in the insect order Strepsiptera.

Genetic diversities in wild and cultivated populations of the two closely-related medical plants species, Tripterygium Wilfordii and T. Hypoglaucum (Celastraceae)

BackgroundThe sustainable supply of medicinal plants is important, and cultivating and domesticating them has been suggested as an optimal strategy. However, this can lead to a loss of genetic diversity. Tripterygium wilfordii Hook. f. is a medicinal plant commonly used in traditional Chinese medicine, but its wild populations are dwindling due to excessive harvesting. To protect the species and meet the increasing demand, it is urgent to cultivate it on a large scale. However, distinguishing between T. wilfordii and T. hypoglaucum, two similar species with different medicinal properties, is challenging. Therefore, it is crucial to understand the genetic diversity and population structure of these species for their sustainable utilization.ResultsIn this study, we investigated the genetic diversity and population structure of the two traditional medicinal semiwoody vines plant species, Tripterygium wilfordii and T. hypoglaucum, including wild and cultivated populations using chloroplast DNA (cpDNA) sequences and microsatellite loci. Our results indicated that the two species maintain a high level of genetic divergence, indicating possible genetic bases for the different contents of bioactive compounds of the two species. T. wilfordii showed lower genetic diversity and less subdivided population structures of both markers than T. hypoglaucum. The potential factors in shaping these interesting differences might be differentiated pollen-to-seed migration rates, interbreeding, and history of population divergence. Analyses of cpDNA and microsatellite loci supported that the two species are genetically distinct entities. In addition, a significant reduction of genetic diversity was observed for cultivated populations of the two species, which mainly resulted from the small initial population size and propagated vegetative practice during their cultivation.ConclusionOur findings indicate significant genetic divergence between T. wilfordii and T. hypoglaucum. The genetic diversity and population structure analyses provide important insights into the sustainable cultivation and utilization of these medicinal plants. Accurate identification and conservation efforts are necessary for both species to ensure the safety and effectiveness of crude drug use. Our study also highlighted the importance of combined analyses of different DNA markers in addressing population genetics of medicinal plants because of the contrasts of inheritance and rates of gene flow. Large-scale cultivation programs should consider preserving genetic diversity to enhance the long-term sustainability of T. wilfordii and T. hypoglaucum. Our study proposed that some populations showed higher genetic diversity and distinctness, which can be considered with priority for conservation and as the sources for future breeding and genetic improvement.

Population genetic diversity of coho salmon (Oncorhynchus kisutch Walbaum) in the Asian part of its range based on the results of microsatellite loci analysis

Polymorphism of 10 nuclear microsatellite loci in coho salmon populations in the Asian part of the range was studied for the first time. Three genetically distinct regional stock complexes were identified: Kamchatka, northern part of the Sea of Okhotsk and Sakhalin. It was shown that all populations, regardless of their geographic location, are characterized by a high level of genetic polymorphism.

Genetic history of the Koryaks and Evens of the Magadan region based on Y chromosome polymorphism data.

In order to clarify the history of gene pool formation of the indigenous populations of the Northern Priokhotye (the northern coast of the Sea of Okhotsk), Y-chromosome polymorphisms were studied in the Koryaks and Evens living in the Magadan region. The results of the study showed that the male gene pool of the Koryaks is represented by haplogroups C-B90-B91, N-B202, and Q-B143, which are also widespread in other peoples of Northeastern Siberia, mainly of Paleo-Asiatic origin. High frequency of haplogroup C-B80, typical of other Tungus-Manchurian peoples, is characteristic of the Evens of the Magadan region. The shared components of the gene pools of the Koryaks and Evens are haplogroups R-M17 and I-P37.2 inherited as a result of admixture with Eastern Europeans (mainly Russians). The high frequency of such Y chromosome haplogroups in the Koryaks (16.7 %) and Evens (37.8 %) is indicative of close interethnic contacts during the last centuries, and most probably especially during the Soviet period. The genetic contribution of the European males' Y chromosome significantly prevails over that of maternally inherited mitochondrial DNA. The study of the Y chromosome haplogroup diversity has shown that only relatively young phylogenetic branches have been preserved in the Koryak gene pool. The age of the oldest component of the Koryak gene pool (haplogroup C-B90-B91) is estimated to be about 3.8 thousand years, the age of the younger haplogroups Q-B143 and N-B202 is about 2.8 and 2.4 thousand years, respectively. Haplogroups C-B90-B91 and N-B202 are Siberian in origin, and haplogroup Q-B143 was apparently inherited by the ancestors of the Koryaks and other Paleo-Asiatic peoples from the Paleo-Eskimos as a result of their migrations to Northeast Asia from the Americas. The analysis of microsatellite loci for haplogroup Q-B143 in the Eskimos of Greenland, Canada and Alaska as well as in the indigenous peoples of Northeastern Siberia showed a decrease in genetic diversity from east to west, pointing to the direction of distribution of the Paleo-Eskimo genetic component in the circumpolar region of America and Asia. At the same time, the Evens appeared in the Northern Priokhotye much later (in the XVII century) as a result of the expansion of the Tungusic tribes, which is confirmed by the results of the analysis of haplogroup C-B80 polymorphisms.

Aspergillus Outbreak in an Intensive Care Unit: Source Analysis with Whole Genome Sequencing and Short Tandem Repeats.

Whole genome sequencing (WGS) is widely used for outbreak analysis of bacteriology and virology but is scarcely used in mycology. Here, we used WGS for genotyping Aspergillus fumigatus isolates from a potential Aspergillus outbreak in an intensive care unit (ICU) during construction work. After detecting the outbreak, fungal cultures were performed on all surveillance and/or patient respiratory samples. Environmental samples were obtained throughout the ICU. WGS was performed on 30 isolates, of which six patient samples and four environmental samples were related to the outbreak, and twenty samples were unrelated, using the Illumina NextSeq 550. A SNP-based phylogenetic tree was created from outbreak samples and unrelated samples. Comparative analysis (WGS and short tandem repeats (STRs), microsatellite loci analysis) showed that none of the strains were related to each other. The lack of genetic similarity suggests the accumulation of Aspergillus spores in the hospital environment, rather than a single source that supported growth and reproduction of Aspergillus fumigatus. This supports the hypothesis that the Aspergillus outbreak was likely caused by release of Aspergillus fumigatus spores during construction work. Indeed, no new Aspergillus cases were observed in the ICU after cessation of construction. This study demonstrates that WGS is a suitable technique for examining inter-strain relatedness of Aspergillus fumigatus in the setting of an outbreak investigation.

ОЦЕНКА ПОДВИДОВОЙ ПРИНАДЛЕЖНОСТИ ПЧЕЛ В ПРИРОДНОМ ПАРКЕ «МУРАДЫМОВСКОЕ УЩЕЛЬЕ»

The article presents the results of a study on the analysis of the subspecies belonging of bee colonies from two apiaries in the Muradymov Gorge Nature Park using nine microsatellite loci of nuclear DNA and the intergenic locus COI-COII of mitochondrial DNA. As a result, it was found that only one family descends on the maternal line from the evolutionary branch M (to which the subspecies dark forest, or Central Russian, bee Apis mellifera mellifera belongs), the remaining families descend from the branch C (includes subspecies A. M. carnica, A. m. ligustica, A. caucasica). The analysis of microsatellite loci of nuclear DNA showed that all families have a hybrid origin or belong to subspecies from the evolutionary branch of C.

Molecular evidence for multiple origins and high genetic differentiation of non-native winter crane fly, Trichocera maculipennis (Diptera: Trichoceridae), in the maritime Antarctic

Native biodiversity and ecosystems of Antarctica safeguarded from biological invasion face recent threats from non-native species, accelerated by increasing human activities and climate changes. Over two decades ago, the winter crane fly, Trichocera maculipennis, was first detected on King George Island. It has now successfully colonized several research stations across King George Island. To understand the origin, genetic diversity, and population structure of this Holarctic species, we conducted mitochondrial DNA cytochrome c oxidase subunit I (COI) sequence analysis across both its native and invasive ranges. In parallel, we performed microsatellite loci analysis within the invasive ranges, utilizing 12 polymorphic microsatellite markers. Furthermore, we compared body sizes among adult males and females collected from three different locations of King George Island. Our COI sequence analysis exhibited two different lineages present on King George Island. Lineage I was linked to Arctic Svalbard and Polish cave populations and Lineage II was related to Canadian Terra Nova National Park populations, implying multiple origins. Microsatellite analysis further exhibited high levels of genetic diversity and significant levels of genetic differentiation among invasive populations. Body sizes of adult T. maculipennis were significantly different among invasive populations but were not attributed to genetics. This significant genetic diversity likely facilitated the rapid colonization and establishment of T. maculipennis on King George Island, contributing to their successful invasion. Molecular analysis results revealed a substantial amount of genetic variation within invasive populations, which can serve as management units for invasive species control. Furthermore, the genetic markers we developed in the study will be invaluable tools for tracking impending invasion events and the travel routes of new individuals. Taken together, these findings illustrate the highly invasive and adaptable characteristics of T. maculipennis. Therefore, immediate action is necessary to mitigate their ongoing invasion and facilitate their eradication.

Genetic diversity and complex structure of the European Roe Deer population at a continental scale

Abstract Although the European Roe Deer (Capreolus capreolus) is one of the most common and widespread ungulate species in Europe and inhabiting a variety of habitats, few studies have addressed its population structure at a large spatial scale using nuclear genetic data. The aims of our study were to: (i) investigate genetic diversity, level of admixture, and genetic structure across European Roe Deer populations; (ii) identify barriers to gene flow; and (iii) reveal factors that have impacted the observed pattern of population genetic structure. Using 12 microsatellite loci, we analyzed 920 European Roe Deer samples from 16 study sites from northern, southern, central, and eastern Europe. The highest genetic diversity was found in central and eastern sites, and lowest in the northern and southern sites. There were 2 main groups of genetically related populations in the study area—one inhabiting mainly Fennoscandia, and the second in the continental part of Europe. This second population was further divided into 3 to 5 spatially distributed genetic clusters. European Roe Deer belonging to the Siberian mitochondrial DNA clade, inhabiting large parts of eastern Europe, were not identified as a separate population in the analysis of microsatellite loci. No isolation by distance (IBD) was detected between roe deer from the fennoscandian and the continental study sites, but the Baltic Sea was inferred to be the main barrier to gene flow. Only weak IBD was revealed within the continental population. Three lower-level genetic barriers were detected in the western, southern, and eastern parts of the study area. The main factors inferred as shaping the observed genetic diversity and population structure of European Roe Deer were postglacial recolonization, admixture of different populations of the species originating from several Last Glacial Maximum refugial areas, and isolation of several study sites.

Demographic History of Scots Pine in the Pleistocene in Northern Eurasia and the Caucasus Region Based on an Analysis of Nuclear Microsatellite Loci

Demographic History of Scots Pine in the Pleistocene in Northern Eurasia and the Caucasus Region Based on an Analysis of Nuclear Microsatellite Loci

Microsatellites and the Major Histocompatibility Complex of the Atlantic Walrus <i>Odobenus rosmarus rosmarus</i> (Linnaeus, 1758) in Haulouts of the Barents Sea

The allelic diversity of the DQB gene of the major histocompatibility complex (MHC) in Atlantic walrus from the European part of the Arctic was analyzed for the first time. We studied animals from the haulouts located on the Franz Josef Land archipelago and near the northern tip of Novaya Zemlya. We demonstrated that there are significant differences for this locus between the two studied haulouts. Simultaneous analysis of microsatellite loci reveals a lower level of differentiation, and also suggest that animals from more than one spatial-geographical stock (population) gather at the summer haulout on Novaya Zemlya. It has been suggested that individuals with different MHC genotypes may prefer different feeding areas, regardless of the areas of residence during the breeding season.

Biological indicators and traceability of the origin of Russian sturgeon juveniles in the lower reaches of the Volga River and the north- western part of the Caspian Sea

The aim of the work: characterization of juveniles released from sturgeon hatcheries into the natural habitat with individual identification of individuals. Methods: Ichthyological researches in the Volga River and its watercourses were surveyed using a 4.5 m fry trawl; in the western part of the Northern Caspian, a trawl survey was carried out using a 9 m trawl and the developed grid of stations, adjusted to take into account the sea level decrease. The trophological material was processed by the quantitative-weight method, followed by the calculation of private and general indices of the filling of the digestive tracts. Molecular genetic methods for the analysis of microsatellite loci and sequencing of a fragment of the control region of mitochondrial DNA were used. Novelty: the origin of the Russian sturgeon and the contribution of artificial reproduction from Russian sturgeon hatcheries to the Volga- Caspian fishery basin were determined by molecular genetic methods. Results: The composition of food organisms and the degree of fattening of Russian sturgeon juveniles after their migration to the sea were determined. The contribution of artificial reproduction from Russian sturgeon hatcheries to the replenishment of the Russian sturgeon population of the Volga- Caspian basin in the period 2016–2021 for fingerlings was averaged 80 %. Practical significance: The intensity of downstream migration in the Volga River and its watercourses of juveniles released from sturgeon hatcheries was studied. The presented data was made it possible to determine the main localization sites of Russian sturgeon juveniles depending on the species composition and abundance of food organisms in the northwestern part of the Caspian Sea. Based on the results of genotyping of spawners at sturgeon hatcheries and juveniles caught in the Northern Caspian, an assessment was made of the effectiveness of the work of the sturgeon hatcheries in 2016–2021.

Genetic Variability of Pacific Rainbow Smelt Osmerus dentex (Osmeridae) from the Seas of Japan and Okhotsk according to the Data of Analysis of Microsatellite Loci and Mitochondrial DNA

Genetic Variability of Pacific Rainbow Smelt Osmerus dentex (Osmeridae) from the Seas of Japan and Okhotsk according to the Data of Analysis of Microsatellite Loci and Mitochondrial DNA

Genetic Variability of Pacific Rainbow Smelt Osmerus dentex (Osmeridae) from the Seas of Japan and Okhotsk according to the Data of Analysis of Microsatellite Loci and Mitochondrial DNA

The genetic diversity of Pacific rainbow smelt Osmerus dentex from the seas of Okhotsk and Japan has been studied based on nine microsatellite loci and the control region of mitochondrial DNA (940 base pairs). The lowest values of all parameters of genetic diversity of mitochondrial DNA were observed in the group of samples from the northern coast of the Sea of Okhotsk. The highest value of the haplotype diversity was found in the sample from the Sakhalin Island and in rainbow smelt from the Sea of Japan. The star-shaped topology of the genealogical structures indicates a rapid expansion of the abundance and the origin of all populations of the species from a single common ancestor from the main refugium. Based on the results of analysis of nuclear markers, we have revealed a statistically significant genetic structuring of rainbow smelt within its Pacific range (the coefficient of genetic differentiation (FST) is 0.033), which is adequately described by the model of isolation by distance. The greatest genetic differences in two types of markers from the other samples have been found in rainbow smelt from the Shkotovka and Botchi rivers of the basin of the Sea of Japan and from the Naiba River (Sakhalin). The observed patterns of genetic differentiation of Pacific rainbow smelt by the nuclear and mitochondrial markers complement each other well and are most likely associated with differences in the distribution of smelt larvae from the spawning grounds, which are determined by the differentiation of oceanographic conditions.

Assessment of genetic diversity and population structure of Neocaridina denticulata sinensis in the Baiyangdian drainage area, China, using microsatellite markers and mitochondrial cox1 gene sequences

Neocaridina denticulata sinensis is a crustacean of major economic significance in the Baiyangdian drainage area. In this study, the first assessment of N. denticulata sinensis genetic diversity and population structure was performed based on sequence analysis of nine polymorphic microsatellite loci and the mitochondrial cytochrome oxidase subunit I (cox1) gene. Samples (n = 192) were collected from four different regions in the Baiyangdian drainage area i.e., Baiyangdian Lake, Jumahe River, Xidayang Reservoir, and Fuhe River. Microsatellite loci analysis identified high levels of genetic diversity represented by observed heterozygosity (Ho) of 0.6865 ∼ 0.9583, expected heterozygosity (He) of 0.7151 ∼ 0.8723, and polymorphism information content (PIC) of 0.6676 ∼ 0.8585. Based on the analysis of cox1 sequences, haplotype diversity (Hd) ranged from 0.568 to 0.853 while nucleotide diversity (π) ranged from 0.0029 to 0.2236. Furthermore, there was no evidence of expansion events in the N. denticulata sinensis populations. Pairwise FST revealed pronounced genetic differentiation, and clustering analyses showed defined genetic structures within the N. denticulata sinensis population. Three groups were identified from four sampled stocks, with Xidayang Reservoir, and Fuhe River populations clustered in the same group. This work identified novel molecular markers and provided an important reference to guide management strategies to assist conservation of N. denticulata sinensis resources.

Pathologic, immunologic, and clinical analysis of the microsatellite instability phenotype in endometrial carcinoma

The objective of this study was to determine if quantifying the microsatellite instability (MSI) phenotype could serve as a biomarker for clinical and immunologic features of deficient mismatch repair (dMMR) endometrial cancer (EC). Patients with EC undergoing hysterectomy whose tumors demonstrated dMMR were included. Immunohistochemistry (IHC) of mismatch repair proteins and polymerase chain reaction analysis of NR27, BAT25, BAT26, NR24, and NR21 microsatellite loci were performed on each case. The MSI phenotype was quantified by subtracting the number of nucleotides of each microsatellite in tumor tissue from the corresponding microsatellite in paired normal tissue and summing the absolute differences. This was termed marker sum (MS)and is a novel quantification. Tumor-infiltrating lymphocytes (TILs) were identified by IHC for CD3, CD4, and CD8 and quantified with digital image analysis. Tumor infiltration of lymphocytes and clinical characteristics were stratified by MS. Four hundred fifty-nine consecutive patients with dMMR EC were analyzed. MS ranged from 1 to 32. Post hoc, 2 cohorts were defined using receiver operating characteristic curves(MS less than 13 and MS greater than 12). With the exception of tumor grade, all clinical and pathologic features, all tumor characteristics, and the numbers of TILs were similar between cohorts. The MSI phenotype is highly variable in dMMR EC, and no correlation between the immune profile and the severity of the MSI phenotype was observed.

Newly identified variability of the antigen binding site coding sequences of the equine major histocompatibility complex class I and class II genes.

The major histocompatibility complex (MHC) with its class I and II genes plays a crucial role in the immune response to pathogens by presenting oligopeptide antigens to various immune response effector cells. In order to counteract the vast variability of infectious agents, MHC class I and II genes usually retain high levels of SNPs mainly concentrated in the exons encoding the antigen binding sites. The aim of the study was to reveal new variability of selected MHC genes with a special focus on MHC class I physical haplotypes. Long-range NGS to was used to identify exon 2-exon 3 alleles in three genetically distinct horse breeds. A total of 116 allelic variants were found in the MHC class I genes Eqca-1, Eqca-2, Eqca-7 and Eqca-Ψ, 112 of which were novel. The MHC class II DRA locus was confirmed to comprise five exon 2 alleles, and no new sequences were observed. Additional variability in terms of 15 novel exon 2 alleles was identified in the DQA1 locus. Extensive overall variability across the entire MHC region was confirmed by an analysis of MHC-linked microsatellite loci. Both diversifying and purifying selection were detected within the MHC class I and II loci analyzed.

Genetic diversity of the Russian sunflower breeding lines revealed by microsatellite loci analysis

The breeding of high-yielding sunflower varieties and hybrids requires the use of parent material with considerable genetic diversity. It can be identified using molecular genetic markers. The purpose of this study was the genotyping of sunflower lines bred by V. S. Pustovoit All-Russian Research Institute of Oil Crops (VNIIMK), developed in different ecological areas of cultivation, and to evaluate their genetic diversity using microsatellite loci. For the studies conducted in 2020-2022, there were used 23 lines from the Central experimental base (СEB), 17 lines from L.A. Zhdanov Don experimental station (DES), and 10 lines from the Armavir experimental station (AES). DNA was isolated from seedlings by the CTAB method. Samples were genotyped using 12 SSR markers. PCR products were separated in 8 % denaturing polyacrylamide gel or by capillary electrophoresis in a genetic analyzer. The main indicators of genetic diversity for all collections did not differ significantly from each other, and were moderate and increased in the collections of VNIIMK: AES – DES – CEB -the joint collection. In total there have been identified 37 alleles, an average 3.083 alleles per locus. The effective number of alleles ranged from 1.094 to 3.290 with an average value of 2.154. The values of the polymorphic information content (PIC) index ranged from 0.084 to 0.651, with an average of 0.434. The values of observed and expected heterozygosity ranged from zero to 0.071, 0.030, on average, and from 0.086 to 0.696, 0.500, on average, respectively. The number of shared alleles between different collections was 23. Molecular variation analysis revealed that most of the total variance (91 %) was due to differences between lines within each collection and 3 % to differences between collections. According to the results of the cluster analysis, the maternal lines from the collections of the CEB, DES, and AES of VNIIMK were mostly grouped into a cluster or subcluster separate from the paternal ones. The obtained results indicate a moderate genetic diversity of the studied sunflower lines of the breeding of VNIIMK and the existence of small differences between the collections.

Genetic Diversity and Population Structure of Common Bean (Phaseolus vulgaris L.) Landraces in the Lazio Region of Italy.

Common bean cultivation has historically been a typical component of rural economies in Italy, particularly in mountainous and hilly zones along the Apennine ridge of the central and southern regions, where the production is focused on local landraces cultivated by small-scale farmers using low-input production systems. Such landraces are at risk of genetic erosion because of the recent socioeconomic changes in rural communities. One hundred fourteen accessions belonging to 66 landraces still being grown in the Lazio region were characterized using a multidisciplinary approach. This approach included morphological (seed traits), biochemical (phaseolin and phytohemagglutinin patterns), and molecular (microsatellite loci) analyses to investigate their genetic variation, structure, and distinctiveness, which will be essential for the implementation of adequate ex situ and in situ conservation strategies. Another objective of this study was to determine the original gene pool (Andean and Mesoamerican) of the investigated landraces and to evaluate the cross-hybridization events between the two ancestral gene pools in the P. vulgaris germplasm in the Lazio region. Molecular analyses on 456 samples (four for each of the 114 accessions) revealed that the P. vulgaris germplasm in the Lazio region exhibited a high level of genetic diversity (He = 0.622) and that the Mesoamerican and Andean gene pools were clearly differentiated, with the Andean gene pool prevailing (77%) and 12% of landraces representing putative hybrids between the two gene pools. A model-based cluster analysis based on the molecular markers highlighted three main groups in agreement with the phaseolin patterns and growth habit of landraces. The combined utilisation of morphological, biochemical, and molecular data allowed for the differentiation of all landraces and the resolution of certain instances of homonymy and synonymy. Furthermore, although a high level of homozygosity was found across all landraces, 32 of the 66 examined (49%) exhibited genetic variability, indicating that the analysis based on a single or few plants per landrace, as usually carried out, may provide incomplete information.

P076 Abdominal pain severity for IBD in remission correlates with genetic clustering and enzymatic activity of faeces-derived Candida albicans strains

Abstract Background Abdominal pain is a common occurrence for approximately 39% of patients with inflammatory bowel diseases in remission (quiescent IBD; qIBD). There is increasing evidence for a contributing role of the gastrointestinal fungal community (i.e., mycobiome) in relation to intestinal inflammation and irritable bowel syndrome (IBS). As such, abundance of Candida spp. and sub-species variation of Candida albicans were previously associated with IBD severity. In the current study, we aim to investigate mycobiome of patients with qIBD and qIBD with abdominal pain (qIBD–AP). Methods Patients with qIBD (defined as faecal calprotectin (FCP) ≤250 μg/g) with (n=91) or without (n=58) abdominal pain provided faecal samples. Abdominal pain was scored based on either the Irritable Bowel Syndrome Symptom Severity Scale (IBS–SSS) or Gastrointestinal Symptom Rating Score (GSRS) questionnaire. Faecal fungal communities were determined based on Internal Transcribed Spacer 1 (ITS1) sequencing. Cultivable yeasts from faecal samples were identified using Matrix Assisted Laser Deionization Time–of–Flight Mass Spectrometry. C. albicans strains (n=137 from 29 patients) were genotyped by ITS Sanger sequencing analysis and typing of seven microsatellite loci. Release of virulence-related enzymes (proteinase, phospholipase, lipase, esterase) by C. albicans was assessed through determination of precipitation zones on solid agar mediums containing enzyme-specific substrates. Results Descriptive mycobiota analysis revealed limited differences between compositions of qIBD and qIBD–AP patients, but a discriminative signature for abdominal pain was extracted using machine-based learning models. While ITS Sanger sequencing of faeces-derived C. albicans was insufficient to elucidate genetic variability, analysis of microsatellite loci revealed extensive variability and clustering into six clone clusters and a likely distinction between qIBD and qIBD-AP patients (Fig. 1). Phospholipase enzymatic activity of C. albicans strains correlated with GSRS–Abdominal Pain sub-score, as did proteinase activity with severity of abdominal pain according to the IBS–SSS (Fig. 2). Additionally, lipase activity inversely correlated with faecal calprotectin (Fig. 2). Conclusion The faecal gut mycobiome is associated with self–reported abdominal pain in patients with IBD in remission. This notion is based on both compositional and culture-dependent methods and specified clones of C. albicans may selectively contribute to abdominal pain for qIBD patients. This study opens further possibilities to investigate the role of faecal gut fungi in light of abdominal pain for qIBD-AP patients.

Loss of Genetic Polymorphism in Hatchery Produced Cirrhinus mrigala as Revealed by Microsatellite Loci Analyses

Loss of Genetic Polymorphism in Hatchery Produced Cirrhinus mrigala as Revealed by Microsatellite Loci Analyses