Devastating bleaching of coral communities at Amitori Bay, Iriomote Island, Japan, occurred in 2016 during the third global mass bleaching event in 2014–2017. The present study documented changes in coral communities in Amitori Bay from just before until after the 2016 bleaching event (2016–2020), by measuring coral cover and recruitment at nine sites (with two additional sites in 2018) in the bay. Spawning rates of acroporid corals were also monitored from 2017 to 2019 by visual observation and using bundle collectors to observe how long the effect of bleaching persisted. Reductions of 64.7 and 89.5% from 2016 to 2017 were observed in cover and recruitment of all coral families, respectively. Coral cover of all coral families recovered to pre-bleaching levels by 2020 and recruitment in 2020 was about two times greater than the pre-bleaching level. These results mirrored those of acroporids. Spawning rates of Acropora corals increased significantly from 40.6% in 2017 to 90.0% in 2019. Recovery of coral cover 4 years after the severe bleaching event was likely related to regrowth of remnants and of surviving juveniles of < 5 cm. The sudden increase in recruitment was likely driven by a combination of larval supply from other populations, increased numbers of reproductive adults, increases in spawning rates, and increased larval retention in the bay due to wind conditions in 2020. This study suggests that coral communities as in Amitori Bay will be critical for local-scale community persistence, serving as both source and sink populations.Supplementary InformationThe online version contains supplementary material available at 10.1007/s00227-022-04091-2.