Amido Moiety Research Articles

Characterization of the Ligand Field in Pseudo‐Octahedral Ni(II) Complexes of Pincer‐Type Amido Ligands: Magnetism, Redox Behavior, Electronic Absorption and High‐Frequency and ‐Field EPR Spectroscopy

AbstractThe description of π‐donor amido moieties as ‘weak‐field’ ligands can belie the influence of metal‐ligand covalency on the overall ligand field of coordination complexes, which can in turn influence properties including the magnetic ground state and those of their excited states. In this contribution, the ligand fields of pseudo‐octahedral Ni(II) complexes supported by diarylamido pincer‐type amido ligands – three previously reported examples supported by asymmetric (2‐R‐phenanthridin‐4‐yl)(8‐quinolinyl)amido ligands (R = Cl, CF3,tBu;RL1) along with a new congener bearing a symmetricbis(8‐quinolinyl)amido ligand (BQA;L2) – were investigated in two ways. First, high‐frequency and ‐field electron paramagnetic resonance spectroscopy (HFEPR), SQUID magnetometry, and electronic absorption spectroscopy were used to determine the ligand field parameters. Second, the ability to electrochemically address ligand‐based oxidations despite metal‐centered SOMOs in the parentS=1 paramagnets was investigated, supported by time‐dependent density functional theory (TDDFT) identification of strong intervalence charge‐transfer (IVCT) transitions attributed to electronic communication between two Namidomoieties mediated by a Ni(II) bridge. These findings are discussed in the broader context of 3d transition metal coordination complexes of weak‐field π‐donor ligands.

Superprotonic Conductivity of MOF-808 Achieved by Controlling the Binding Mode of Grafted Sulfamate.

A metal-organic framework (MOF) having superprotonic conductivity, MOF-808, is prepared by modulating the binding mode of the sulfamate (SA) moieties grafted onto the metal clusters. The activation of the SA-grafted MOF-808 at 150 °C changes the binding mode of the grafted SA from monodentate to bridging bidentate, thus converting the neutral amido (-S-NH2 ) moiety of the grafted SA to the more acidic cationic sulfiliminium (-S=NH2+ ) moiety. Further, the acidic sulfiliminium moiety of MOF-808-4SA-150 results in more efficient proton conduction than the amido moiety of MOF-808-4SA-60. At 60 °C and 95 % relative humidity, MOF-808-4SA-150 is found to have a proton conductivity of 7.89×10-2 S cm-1 , which is more than 30-times higher than that of MOF-808-4SA-60. Moreover, this superprotonic conductivity is well maintained over 1000 cycles of conductivity measurements and for similar cyclic measurements each day for seven days.

Superprotonic Conductivity of MOF‐808 Achieved by Controlling the Binding Mode of Grafted Sulfamate

AbstractA metal–organic framework (MOF) having superprotonic conductivity, MOF‐808, is prepared by modulating the binding mode of the sulfamate (SA) moieties grafted onto the metal clusters. The activation of the SA‐grafted MOF‐808 at 150 °C changes the binding mode of the grafted SA from monodentate to bridging bidentate, thus converting the neutral amido (‐S−NH2) moiety of the grafted SA to the more acidic cationic sulfiliminium (‐S=NH2+) moiety. Further, the acidic sulfiliminium moiety of MOF‐808‐4SA‐150 results in more efficient proton conduction than the amido moiety of MOF‐808‐4SA‐60. At 60 °C and 95 % relative humidity, MOF‐808‐4SA‐150 is found to have a proton conductivity of 7.89×10−2 S cm−1, which is more than 30‐times higher than that of MOF‐808‐4SA‐60. Moreover, this superprotonic conductivity is well maintained over 1000 cycles of conductivity measurements and for similar cyclic measurements each day for seven days.

Emergence of a New [NNN] Pincer Ligand via Si-H Bond Activation and β-Hydride Abstraction at Tetravalent Cerium.

The cerium(IV) pyrazolate complexes [Ce(Me2pz)4]2 and [Ce(Me2pz)4(thf)] initiate β‐hydride abstraction of the bis(dimethylsilyl)amido moiety, to afford a heteroleptic cerium(IV) species containing a dimethylpyrazolyl‐substituted silylamido ligand, namely [Ce(Me2pz)3(bpsa)] (bpsa=bis((3,5‐dimethylpyrazol‐1‐yl)dimethylsilyl)amido; Me2pz =3,5‐dimethylpyrazolato), along with some cerium(III) species. Remarkably, the nucleophilic attack of the pyrazolyl at the silicon atom and concomitant Si−H‐bond cleavage is restricted to the tetravalent cerium oxidation state and appears to proceed via the formation of a transient cerium(IV) hydride, which engages in immediate redox chemistry. When [Ce(Me2pz)4]2 is treated with [Li{N(SiMe3)2}], that is, in the absence of the SiH functionality, any redox chemistry did not occur. Instead, the ceric ate complex [LiCe2(Me2pz)9] and the stable mixed‐ligand ceric species [Ce(Me2pz)2{N(SiMe3)2}2] were obtained.

Homolytic versus Heterolytic Hydrogen Evolution Reaction Steered by a Steric Effect.

Several H-H bond forming pathways have been proposed for the hydrogen evolution reaction (HER). Revealing these HER mechanisms is of fundamental importance for the rational design of catalysts and is also extremely challenging. Now, an unparalleled example of switching between homolytic and heterolytic HER mechanisms is reported. Three nickel(II) porphyrins were designed and synthesized with distinct steric effects by introducing bulky amido moieties to ortho- or para-positions of the meso-phenyl groups. These porphyrins exhibited different catalytic HER behaviors. For these Ni porphyrins, although their 1e-reduced forms are active to reduce trifluoroacetic acid, the resulting Ni hydrides (depending on the steric effects of porphyrin rings) have different pathways to make H2 . Understanding HER processes, especially controllable switching between homolytic and heterolytic H-H bond formation pathways through molecular engineering, is unprecedented in electrocatalysis.

Homolytic versus Heterolytic Hydrogen Evolution Reaction Steered by a Steric Effect

AbstractSeveral H−H bond forming pathways have been proposed for the hydrogen evolution reaction (HER). Revealing these HER mechanisms is of fundamental importance for the rational design of catalysts and is also extremely challenging. Now, an unparalleled example of switching between homolytic and heterolytic HER mechanisms is reported. Three nickel(II) porphyrins were designed and synthesized with distinct steric effects by introducing bulky amido moieties to ortho‐ or para‐positions of the meso‐phenyl groups. These porphyrins exhibited different catalytic HER behaviors. For these Ni porphyrins, although their 1e‐reduced forms are active to reduce trifluoroacetic acid, the resulting Ni hydrides (depending on the steric effects of porphyrin rings) have different pathways to make H2. Understanding HER processes, especially controllable switching between homolytic and heterolytic H−H bond formation pathways through molecular engineering, is unprecedented in electrocatalysis.

Alternating Copolymerization of CO2 and Cyclohexene Oxide by New Pyridylamidozinc(II) Catalysts

Five new Zn(II) complexes bearing pyridylamido ligands with different substituents at the pyridine and at the amido moieties were synthesized and evaluated as catalysts for the alternating copolyme...

A uranium(IV) imido amido triazenido complex formed via addition of a C[sbnd]H bond across a U[sbnd]N multiple bond

Addition of three equivalents of KC8 to a mixture of UI3(1,4-dioxane)1.5 and three equivalents of a bulky m-terphenyl azide led to the isolation of a uranium(IV) complex containing an imido, an amido, and a triazenido group on the same metal center. The amido moiety was formed via addition of an aryl CH bond across a UNimido bond, and an equivalent of the terphenyl azide inserted into the resulting UC bond. X-ray crystallography revealed a highly asymmetric solid-state structure, and 1H NMR spectroscopy confirmed low solution-state symmetry. This work demonstrates alternate reaction pathways that must be considered when attempting to prepare uranium complexes with multiple imido groups.

How Solvent Affects C-H Activation and Hydrogen Production Pathways in Homogeneous Ru-Catalyzed Methanol Dehydrogenation Reactions.

Insights into the mechanism of the catalytic cycle for methanol dehydrogenation catalyzed by a highly active PNP pincer ruthenium complex in methanol solvent are presented, using DFT-based molecular dynamics with an explicit description of the solvent, as well as static DFT calculations using microsolvation models. In contrast to previous results, we find the amido moiety of the catalyst to be permanently protonated under catalytic conditions. Solvent molecules actively participate in crucial reaction steps and significantly affect the reaction barriers when compared to pure gas-phase models, which is a direct result of the enhanced solvent stabilization of methoxide anion intermediates. Further, the calculations reveal that this system does not operate via the commonly assumed Noyori-type outer-sphere metal–ligand cooperative pathway. Our results show the importance of incorporating a molecular description of the solvent to gain a deeper and accurate understanding of the reaction pathways, and stress on the need to involve explicit solvent molecules to model complex catalytic processes in a realistic manner.

DHPA-Containing Cobalt-Based Redox Metal-Organic Cyclohelicates as Enzymatic Molecular Flasks for Light-Driven H2 Production

The supramolecular assembly of predesigned organic and inorganic building blocks is an excellent tool for constructing well-defined nanosized molecular cavities that catalyse specific chemical transformations. By incorporating a reduced nicotinamide adenine dinucleotide (NADH) mimic within the ligand backbone, a redox-active cobalt-based macrocycle was developed as a redox vehicle for the construction of an artificial photosynthesis (AP) system. The cyclohelicate can encapsulate fluorescein within its cavity for light-driven H2 evolution, with the turnover number (TON) and turnover frequency (TOF) reaching 400 and 100 moles H2 per mole redox catalyst per hour, respectively. Control experiments demonstrated that the reactions were potentially occurred within the cavity of the cyclohelicates which were inhibited in the presence of adenosine triphosphate (ATP), and the redox-active NADH mimic dihydropyridine amido moieties within the ligands played an important role in photocatalytic proton reduction process.

Pyrrolyl-based pincer complexes of iron – Synthesis and electronic structure

Four- and five-coordinate high-spin (S=2) Fe(II) complexes bearing the pyrrolyl-derived tBuPNP pincer ligand [tBuPNP=2,5-(tBu2PCH2)2(C4H2N)] have been prepared. All three complexes were characterized by X-ray diffraction, zero-field 57Fe Mössbauer spectroscopy and solid-state magnetic susceptibility studies. Furthermore, the experimentally determined Mössbauer parameters of compounds 4–6 can be modeled satisfactorily by density functional theory (DFT) computations at the B97D level of theory. Introduction of the sterically demanding bis(trimethylsilyl)amido moiety induces significant distortions from ideal tetrahedral geometry in [(tBuPNP)FeN(SiMe3)2] (4), featuring an Fe(II) high-spin state with large negative axial zero-field splitting and slow paramagnetic relaxation at low temperature, as evidenced by measurements of the solid-state magnetic susceptibility and zero-field 57Fe Mössbauer spectroscopy. Replacing the chlorido ligand in [(tBuPNP)FeCl] (3) by the bidentate acetylacetonato (acac) ligand enforces a trigonal–bipyramidal structure in [(tBuPNP)Fe(acac)] (5), in which the Fe(II) atom also adopts a high-spin configuration. Reaction of 3 with adamantyl azide allowed us to confirm the inherent lability of the phosphine coordination, since the azide inserts into the FeP bond to form [(tBuPNPN3Adamantyl)FeCl] (6), in which the tBuPNP ligand is transformed to a phosphino-pyrrolyl-phosphazide ligand framework (tBuPNPN3Adamantyl). This motif can be considered as a trapped Staudinger intermediate along the reaction pathway of free phosphines with organic azides to form phosphinimines. Bidentate binding of the phosphazide sidearm in κN:κN-fashion to the Fe(II) atom enforces an s-anti coordination of the P1–N2–N3–N4 moiety, which raises the barrier for the thermodynamically favorable N2 elimination and allows this intermediate to be trapped. Complex 6 contains a high-spin Fe(II) atom with a square-pyramidal structure.

N-Heterocyclic Carbene-Carbodiimide ("NHC-CDI") Adduct or Zwitterionic-Type Neutral Amidinate-Supported Magnesium(II) and Zinc(II) Complexes.

A series of structurally characterized magnesium and zinc complexes of the form L4-tBuPh-M{N(SiMe3)2}2 [M = Mg (1) and Zn (2); L4-tBuPh = 1,3-diethyl-4,5-dimethylimidazolium-2-{N,N'-bis(4-tert-butylphenyl)amidinate}], L4-iPrPh-M{N(SiMe3)2}2 [M = Mg (3) and Zn (4); L4-iPrPh = 1,3-diethyl-4,5-dimethylimidazolium-2-{N,N'-bis(4-isopropylphenyl)amidinate}], and L4-iPrPh-ZnEt2 (5) bearing a zwitterionic-type neutral amidinate or N-heterocyclic carbene-carbodiimide ("NHC-CDI") adduct and monoanionic amido or alkyl ligands have been reported. The synthesis of compounds 1-5 was achieved by the direct addition of a "NHC-CDI" adduct to a corresponding metal bis(amide) or dialkyl reagent. All compounds 1-5 exist as monomers in the solid state. In all cases, the metal (magnesium or zinc) centers adopt a distorted four-coordinate tetrahedral geometry bonded to one N,N'-chelated neutral zwitterionic ligand and two monoanionic amido or alkyl moieties. In contrast, sterically bulky zwitterionic amidinate 1,3-diethyl-4,5-dimethylimidazolium-2-{N,N'-bis(2,6-diisopropylphenyl)amidinate} (LDipp) upon treatment with lithium bis[(trimethylsilyl)amide], Li{N(SiMe3)2}, affords the NHC-lithium complex MeIEt-[Li{N(SiMe3)2}]2 (6), in which one molecule of NHC (MeIEt = 1,3-diethyl-4,5-dimethylimidazol-2-ylidene) coordinates to one of the two lithium centers. In a similar way, the reaction between LDipp and Mg{N(SiMe3)2}2 allowed the formation of a NHC adduct of metal bis(amide), MeIEt-Mg{N(SiMe3)2}2 (7), instead of a zwitterionic adduct of metal bis(amide). Alternatively, the synthesis of both compounds 6 and 7 was achieved by the direct addition of 1 equiv of NHC, i.e., MeIEt to Li{N(SiMe3)2} (2.0 equiv) and Mg{N(SiMe3)2}2 (1.0 equiv) in benzene-d6, respectively. All compounds (1-7) were characterized by multinuclear {1H, 13C, and 29Si (for 1-4, 6, and 7) and 7Li (for compound 6)} magnetic resonance spectroscopy, mass spectrometry, elemental analysis, and single-crystal X-ray structural analysis. In addition, preliminary reactivity studies of zwitterion-supported metal complexes have been investigated. Furthermore, density functional theory calculations have been carried out to obtain the energetics of zwitterion-supported lithium and magnesium complexes.

A Palladium-Catalyzed α-Arylation of Oxindoles with Aryl Tosylates.

A palladium-catalyzed monoselective C3 arylation of 2-oxindoles with aryl tosylates is described. With the Pd/CM-phos catalyst system, the corresponding 3-arylated oxindoles can be obtained in good to excellent yields (≤97%). The reaction conditions are mild (using 0.5 mol % Pd in general and KF as a base), and functional groups such as methyl ester, NH amido, and enolizable keto moieties are found to be compatible.

Effect of N- and C-terminal functional groups on the stability of collagen triple helices.

The effect of charged versus neutral N- and C-termini on the stability of the collagen triple helix was examined. Thermal denaturation studies at different pH with collagen model peptides showed that an ammonium group at the N-terminus destabilizes the triple helix more than a carboxylate at the C-terminus. A neutral carboxylic acid stabilizes the triple helix more than an amido moiety at the C-terminus.

Reactivity of the parent amido complexes of iridium with olefins: C-NH2 bond formation versus C-H activation.

Herein we report on the different chemical reactivity displayed by two mononuclear terminal amido compounds depending on the nature of the coordinated diene. Hence, treatment of amido-bridged iridium complexes [{Ir(μ-NH2)(tfbb)}3] (1; tfbb = tetrafluorobenzobarrelene) with dppp (dppp = bis(diphenylphosphane)propane) leads to the rupture of the amido bridges forming the mononuclear terminal amido compound [Ir(NH2)(dppp)(tfbb)] (3) in the first stage. On changing the reaction conditions, the formation of a C-NH2 bond between the amido moiety and the coordinated diene is observed and a new dinuclear complex [{Ir(1,2-η2-4-κ-C12H8F4N)(dppp)}2(μ-dppp)] (4) has been isolated. On the contrary, the diiridium amido-bridged complex [{Ir(μ-NH2)(cod)}2] (2; cod = 1,5-cyclooctadiene) in the presence of dppb (dppb = bis(diphenylphosphane)butane) allows the isolation of a mononuclear complex [Ir(1,2,3-η3-6-κ-C8H10)H(dppb)] (5), as a consequence of the extrusion of ammonia. The monitoring of the reaction of 2 with dppb (and dppp) allowed us to detect terminal amido complexes [Ir(NH2)(P-P)(cod)] (P-P = dppb (6), dppp (7)) in solution, as confirmed by an X-ray analysis of 7. Complex 7 was observed to evolve into hydrido species 5 at room temperature. DFT studies showed that C-H bond activation occurs through the deprotonation of one methylene fragment of the cod ligand by the highly basic terminal amido moiety instead of C-H oxidative addition to the Ir(i) center.

Stereoselective Organocatalyzed Synthesis of α‐Fluorinated β‐Amino Thioesters and Their Application in Peptide Synthesis

Abstractα‐Fluorinated β‐amino thioesters were obtained in high yields and stereoselectivities by organocatalyzed addition reactions of α‐fluorinated monothiomalonates (F‐MTMs) to N‐Cbz‐ and N‐Boc‐protected imines. The transformation requires catalyst loadings of only 1 mol % and proceeds under mild reaction conditions. The obtained addition products were readily used for coupling‐reagent‐free peptide synthesis in solution and on solid phase. The α‐fluoro‐β‐(carb)amido moiety showed distinct conformational preferences, as determined by crystal structure and NMR spectroscopic analysis.

Stereoselective Organocatalyzed Synthesis of α-Fluorinated β-Amino Thioesters and Their Application in Peptide Synthesis.

α-Fluorinated β-amino thioesters were obtained in high yields and stereoselectivities by organocatalyzed addition reactions of α-fluorinated monothiomalonates (F-MTMs) to N-Cbz- and N-Boc-protected imines. The transformation requires catalyst loadings of only 1 mol % and proceeds under mild reaction conditions. The obtained addition products were readily used for coupling-reagent-free peptide synthesis in solution and on solid phase. The α-fluoro-β-(carb)amido moiety showed distinct conformational preferences, as determined by crystal structure and NMR spectroscopic analysis.

Synthesis, pharmacological assessment, molecular modeling and in silico studies of fused tricyclic coumarin derivatives as a new family of multifunctional anti-Alzheimer agents

A series of fused tricyclic coumarin derivatives bearing iminopyran ring connected to various amido moieties were developed as potential multifunctional anti-Alzheimer agents for their cholinesterase inhibitory and radical scavenging activities. In vitro studies revealed that most of these compounds exhibited high inhibitory activity on acetylcholinesterase (AChE), with IC50 values ranging from 0.003 to 0.357 μM which is 2–220 folds more potent than the positive control, galantamine. Their inhibition selectivity against AChE over butyrylcholinesterase (BuChE) has increased about 194 fold compared with galantamine. The developed compounds also showed potent ABTS radical scavenging activity (IC50 7.98–15.99 μM). Specifically, the most potent AChE inhibitor 6n (IC50 0.003 ± 0.0007 μM) has an excellent antioxidant profile as determined by the ABTS method (IC50 7.98 ± 0.77 μM). Moreover, cell viability studies in SK N SH cells showed that the compounds 6m–q have significant neuroprotective effects against H2O2-induced cell death, and are not neurotoxic at all concentrations except 6n and 6q. The kinetic analysis of compound 6n proved that it is a mixed-type inhibitor for EeAChE (Ki1 0.0103 μM and Ki2 0.0193 μM). Accordingly, the molecular modeling study demonstrated that 6m–q with substituted benzyl amido moiety possessed an optimal docking pose with interactions at catalytic active site (CAS) and peripheral anionic site (PAS) of AChE simultaneously and thereby they might prevent aggregation of Aβ induced by AChE. Furthermore, in silico ADMET prediction studies indicated that these compounds satisfied all the characteristics of CNS acting drugs. Most active inhibitor 6n is permeable to BBB as determined in the in vivo brain AChE activity. To sum up, the multipotent therapuetic profile of these novel tricyclic coumarins makes them promising leads for developing anti-Alzheimer agents.

Bimetallic Complexes Supported by a Redox-Active Ligand with Fused Pincer-Type Coordination Sites.

The remarkable chemistry of mononuclear complexes featuring tridentate, meridionally chelating "pincer" ligands has stimulated the development of ligand frameworks containing multiple pincer sites. Here, the coordination chemistry of a novel pentadentate ligand (L(N3O2)) that provides two closely spaced NNO pincer-type compartments fused together at a central diarylamido unit is described. The trianionic L(N3O2) chelate supports homobimetallic structures in which each M(II) ion (M = Co, Cu, Zn) is bound in a meridional fashion by the bridging diarylamido N atom and O,N-donors of the salicyaldimine arms. The metal centers are also coordinated by a mono- or bidentate auxiliary ligand (L(aux)), resulting in complexes with the general form [M2(L(N3O2))(L(aux))2](+) (where L(aux) = 1-methyl-benzimidazole (1MeBI), 2,2'-bipyridine (bpy), 4,4'-dibromo-2,2'-bipyridine (bpy(Br2)), or (S)-2-(4-isopropyl-4,5-dihydrooxazolyl)pyridine (S-(iPr)OxPy)). The fused nature of the NNO pincer sites results in short metal-metal distances ranging from 2.70 Å for [Co2(L(N3O2)) (bpy)2](+) to 3.28 Å for [Zn2(L(N3O2)) (bpy)2](+), as revealed by X-ray crystallography. The complexes possess C2 symmetry due to the twisting of the aryl rings of the μ-NAr2 core; spectroscopic studies indicate that chiral L(aux) ligands, such as S-(iPr)OxPy, are capable of controlling the helical sense of the L(N3O2) scaffold. Since the four- or five-coordinate M(II) centers are linked solely by the amido moiety, each features an open coordination site in the intermetallic region, allowing for the possibility of metal-metal cooperativity in small-molecule activation. Indeed, the dicobalt(II) complex [Co2(L(N3O2)) (bpy(Br2))2](+) reacts with O2 to yield a dicobalt(III) species with a μ-1,2-peroxo ligand. The bpy-containing complexes exhibit rich electrochemical properties due to multiple metal- and ligand-based redox events across a wide (3.0 V) potential window. Using electron paramagnetic resonance (EPR) spectroscopy and density functional theory (DFT), it was determined that one-electron oxidation of [Co2(L(N3O2)) (bpy)2](+) results in formation of a S = 1/2 species with a L(N3O2)-based radical coupled to low-spin Co(II) centers.

Cinnoline derivatives as human neutrophil elastase inhibitors

Compounds that can effectively inhibit the proteolytic activity of human neutrophil elastase (HNE) represent promising therapeutics for treatment of inflammatory diseases. We present here the synthesis, structure–activity relationship analysis, and biological evaluation of a new series of HNE inhibitors with a cinnoline scaffold. These compounds exhibited HNE inhibitory activity but had lower potency compared to N-benzoylindazoles previously reported by us. On the other hand, they exhibited increased stability in aqueous solution. The most potent compound, 18a, had a good balance between HNE inhibitory activity (IC50 value = 56 nM) and chemical stability (t1/2 = 114 min). Analysis of reaction kinetics revealed that these cinnoline derivatives were reversible competitive inhibitors of HNE. Furthermore, molecular docking studies of the active products into the HNE binding site revealed two types of HNE inhibitors: molecules with cinnolin-4(1H)-one scaffold, which were attacked by the HNE Ser195 hydroxyl group at the amido moiety, and cinnoline derivatives containing an ester function at C-4, which is the point of attack of Ser195.