Altamaha River Estuary Research Articles

Non-natal Adult Atlantic Sturgeon Are Common in the Altamaha River Estuary, Georgia, USA

Non-natal Adult Atlantic Sturgeon Are Common in the Altamaha River Estuary, Georgia, USA

Long‐term trends in abundance and recruitment of Shortnose Sturgeon in the Altamaha River, Georgia

AbstractObjectiveThe objective of this study was to estimate the population size and annual recruitment of Shortnose Sturgeon Accipenser brevirostrum in the Altamaha River estuary in Georgia, United States, during an 11‐year period. The Shortnose Sturgeon is an endangered fish species that occupies rivers on the east coast of North America. Previous studies have suggested that the Altamaha River supports the largest population of Shortnose Sturgeon in the southern United States; however, the status of the population has not been assessed in 11 years.MethodsWe used entanglement gears to capture Shortnose Sturgeon in the Altamaha River estuary, marked them, and used an established statistical method (closed‐population capture–mark–recapture models) to annually estimate total population size and age‐1 recruitment from 2012 to 2022.ResultWe were able to estimate the size of age‐1 cohorts in 7 of the 11 years of data collection. Point estimates of annual age‐1 recruitment varied between 113 and 1021 individuals, and total population size varied between 452 (95% confidence interval [CI]: 116–2277) and 5054 individuals (95% CI: 2155–13,267).ConclusionRecruitment of age‐1 juveniles was variable, suggesting that reproduction success is inconsistent between years in the Altamaha River. The results of this study, in combination with previous work, do not show any clear trends in Altamaha River Shortnose Sturgeon population abundance or recruitment. The population seems to be stable, but in the absence of historical population numbers, it is unclear whether the population should be considered recovered or is stagnated in its recovery.

The effect of a small vegetation dieback event on salt marsh sediment transport

AbstractVegetation is a critical component of the ecogeomorphic feedbacks that allow a salt marsh to build soil and accrete vertically. Vegetation dieback can therefore have detrimental effects on marsh stability, especially under conditions of rising sea levels. Here, we report a variety of sediment transport measurements associated with an unexpected, natural dieback in a rapidly prograding marsh in the Altamaha River Estuary, Georgia. We find that vegetation mortality led to a significant loss in elevation at the dieback site as evidenced by measurements of vertical accretion, erosion, and surface topography compared to vegetated reference areas. Below‐ground vegetation mortality led to reduced soil shear strength. The dieback site displayed an erosional, concave‐up topographic profile, in contrast to the reference sites. At the location directly impacted by the dieback, there was a reduction in flood dominance of suspended sediment concentration. Our work illustrates how a vegetation disturbance can at least temporarily reverse the local trajectory of a prograding marsh and produce complex patterns of sediment transport. © 2018 John Wiley & Sons, Ltd.

Isotopes and elemental ratios in multi‐parameter mixing models

Concentration measurements, stable isotope signatures, and elemental ratios are extensively used as parameters in mixing models to identify the source material contributing to mixtures. Determining these contributions in complex mixtures necessitates the use of multiple tracers. Here, we show that this requires careful selection of the parameters used, and that the common direct use of isotopic signatures or elemental ratios in mixing models when combined with other tracers can lead to erroneous results. We further demonstrate that when the number of available tracers exceeds the number of source materials, finding the fractional contributions that best fit the data may benefit from normalization, and we present a simple measure indicating when the outcome of mixing model calculations is poorly constrained. Finally, as a practical example, we investigated the impact of parameter choices through a reanalysis of literature data on organic matter cycling along the Altamaha River estuary.

Climate Drivers of Spartina alterniflora Saltmarsh Production in Georgia, USA

Tidal wetlands are threatened by global changes related not only to sea level rise but also to altered weather patterns. To predict consequences of these changes on coastal communities, it is necessary to understand how temporally varying abiotic conditions drive wetland production. In 2000–2011, we conducted annual surveys of Spartina alterniflora biomass in tidal marshes at nine sites in and around the Altamaha river estuary on the coast of Georgia, USA. End of the year live biomass was assessed in the creekbank and midmarsh zones to estimate annual net primary production (ANPP). River discharge was the most important driver of S. alterniflora ANPP, especially in creekbank vegetation. Increased river discharge reduces water column salinity, and this was most likely the proximate driver of increased production. In the midmarsh zone, the patterns were less distinct, although river discharge was again the best predictor, but maximum temperature had similar predictive ability. In contrast to results from terrestrial grasslands, we found no consistent evidence for a sharply delimited critical period for any climate driver in the tidal marsh, which indicates that plant growth was responsive to abiotic drivers at any time during the growing season. Results were broadly consistent across multiple sites within a geographic region. Our results differ from previous analyses of production in S. alterniflora marshes, which either identified oceanic drivers of S. alterniflora production or were unable to identify any drivers, likely because the low-latitude sites we studied were hotter and more affected by river discharge than those in previous studies.

Alternating Effects of Climate Drivers on Altamaha River Discharge to Coastal Georgia, USA

Freshwater delivery is an important factor determining estuarine character and health and may be influenced by large-scale climate oscillations. Variability in freshwater delivery (precipitation and discharge) to the Altamaha River estuary (GA, USA) was examined in relation to indices for several climate signals: the Bermuda High Index (BHI), the Southern Oscillation Index (SOI), the Improved El Nino Modoki Index (IEMI), the North Atlantic Oscillation (NAO), the Atlantic Multidecadal Oscillation (AMO), the Pacific Decadal Oscillation (PDO), and the Pacific/North American Pattern (PNA). Discharge to this estuary has been linked to key ecosystem properties (e.g., salinity regime, water residence time, nutrient inputs, and marsh processes), so understanding how climate patterns affect precipitation and river discharge will help elucidate how the estuarine ecosystem may respond to climate changes. Precipitation patterns in the Altamaha River watershed were described using empirical orthogonal functions (EOFs) of the combined multidecadal time series of precipitation at 14 stations. The first EOF (67 % of the variance) was spatially uniform, the second EOF (11 %) showed a spatial gradient along the long axis of the watershed (NW–SE), and the third EOF (6 %) showed a NE–SW pattern. We compared the principal components (PCs) associated with these EOFs, monthly standardized anomalies of Altamaha River discharge at the gauge closest to the estuary, and the climate indices. Complex, seasonally alternating patterns emerged. The BHI was correlated with June–January discharge and precipitation PC 1. The SOI was correlated with January–April discharge and precipitation PC 2, and also weakly correlated with PC 1 in November–December. The AMO was correlated with river discharge and precipitation PC 3 mainly in December–February and June. The correlation patterns of precipitation PCs with PDO and PNA were similar to those with SOI, but weaker. There were no consistent relationships with two NAO indices or IEMI. Connections between climate signals and estimates of nutrient loading were consistent with the connections to discharge. The occurrence of tropical storms in the region was strongly related to the BHI but not to the other climate indices, possibly representing the influence of storm tracking more than the rate of storm formation. Comparison with the literature suggests that the patterns found may be typical of southeastern USA estuaries but are likely to be different from those outside the region.

Environmental factors responsible for the incidence of antibiotic resistance genes in pristine Crassostrea virginica reefs

The occurrence of tetracycline resistance (TRG) and integrase (INT) genes were monitored in Crassostrea virginica oyster reefs of three pristine creeks (SINERR, Georgia, USA). Their profiles revealed 85% similarity with the TRG/INT profiles observed in the adjacent to the SINERR and contaminated Altamaha River estuary (Barkovskii et al., 2010). The TRG/INT spectra and incidence frequencies corresponded to the source of oceanic input and to run-offs from creeks’ watersheds. The highest incidence frequencies and concentrations were observed in oysters. TRG/INT incidences correlated positively (Spearman Rank=0.88), and negatively correlated (−0.63 to −0.79) with creek salinity, conductivity, dissolved solids, and temperature. Coliform incidence positively correlated with temperature, and not with the TRG/INT incidence. The Altamaha River estuary was the primary TRG/INT source for the reefs with contributions from creek’s watersheds. TRG/INT were carried by non-coliforms with a preference for low-to-temperate thermohaline environments coupled with bioaccumulation by oysters.

Avian Communities of the Altamaha River Estuary in Georgia, USA

Abstract We surveyed male breeding birds in five habitats (bottomland forest, maritime oak [Quercus spp.], pine [Pinus spp.] forest, maritime shrub, saltmarsh) of coastal Georgia, USA using distance-sampling methods to estimate population densities. We examined species-habitat relationships using indicator species analysis (ISA). Acadian Flycatcher (Empidonax virescens) in bottomland forest, Northern Parula (Parula americana) in maritime oak, Brown-headed Nuthatch (Sitta pusilla) in pine forest, Clapper Rail (Rallus longirostris) in saltmarsh, and White-eyed Vireo (Vireo griseus) in shrub habitat ranked highest for Partners in Flight (PIF) priority species by densities. The ISA indicated fewer PIF priority species were associated with saltmarsh, but more species (6) were unique to saltmarsh than any other habitat. Indicator species occurred more often in maritime oak than bottomland forest (8 vs. 6), but both habitats had similar numbers of PIF priority species (4). Shrub habitat covered the smallest area...

Drought-associated shifts in Spartina alterniflora and S. cynosuroides in the Altamaha River estuary

In estuarine systems, informed water resource management decisions rely, in part, on evaluating how changes in freshwater inflow and salinity affect a selected management target (i.e., habitat or organismal changes). This study examined the distribution of Spartina alterniflora and S. cynosuriodes species along the Altamaha River estuary in Georgia in association with an extensive drought, during which time freshwater inflow decreased considerably and salty water encroached into previously brackish areas. Bankside vegetation was surveyed along the length of the estuary at the beginning and end of the drought (2000, 2002), and again in 2004 after flows had increased. In addition, a removal experiment, in which one or the other plant was removed from naturally mixed communities, was conducted during the drought (2001–2002). In all surveys, S. cynosuroides densities decreased at a location that corresponded to where average high tide salinities were > 14 psu, such that the downstream border shifted from approximately 3 to 6 km from the mouth of the river between 2000 and 2002 and then back to 3 km in 2004. Although the peak density of S. alterniflora also shifted upstream between 2000 and 2002, upstream densities were high in 2004 and plant distribution did not correspond with salinity. In the removal experiment, densities and relative % cover of S. alterniflora increased in all treatments (including controls), whereas densities of S. cynosuroides remained relatively constant except in treatments where it was purposely removed. We interpret these results to suggest that S. alterniflora is a strong invader that can expand into new habitat under stressful (increased salinity, low flow) conditions, and that once it is established it can co-exist with S. cynosuroides. The more rapid response of S. cynosuroides (shifts occurred within 2 years) suggests that its downstream limit is a potential indicator of changes in inflow conditions in this system.

Ecosystem development of a sandbar emergent tidal marsh, Altamaha River Estuary, Georgia, USA

Vegetation structure and soil properties were measured on a sandbar, a three year old sandbar emergent marsh (SEM), and five mature Spartina alterniflora Loisel marshes located near the mouth of the Altamaha River (Georgia, USA) to determine how quickly tidal marsh vegetation and soils develop during primary succession. Those data were compared to published data collected from young (10-16 yr old) natural marshes in Virginia and young (1-28 yr old) constructed marshes in North Carolina to determine if the rate of ecosystem development is similar among tidal marshes of the southeastern US coast. Within three years of emergence, aboveground biomass of SEM was comparable to mature marshes in the area, although stem height and density were distinctly different as the SEM contained more stems that were of shorter height than mature marshes. Following colonization by vegetation, soil properties (0-30 cm) of SEM had begun to differentiate from sediments of the sandbar. Surface (0-10 cm) and subsurface (10-30 cm) soil bulk density was less, and organic carbon (C), nitrogen (N), and percent silt (0-10 cm) were greater in sediments of SEM than in the sandbar. Even so, soils of SEM contained less organic C, N, silt, and clay than mature marshes. However, accumulation rates of organic C (260 6 40 g m 22 yr 21 )a nd N( 116 3gm 22 yr 21 ) in soils of SEM was 5 to 7 times greater than in mature marshes (35 6 4gCm 22 yr 21 ,2 6 0.2 g N m 22 yr 21 ). Trajectories of development for soil organic C and N pools were similar for our SEM, young natural S. alterniflora marshes in Virginia, and young constructed S. alterniflora marshes in North Carolina suggesting that soil development proceeds at similar rates for tidal marshes along much of the southeast US coast.

A study of estuarine flow using the roving adcp data

A study of estuarine flows during a neap tide was performed using 13-hour roving acoustic Doppler current profiles (ADCP) and conductivity-temperature-depth (CTD) profiles in the Altamaha River estuary, Georgia, U.S.A. The least-squared harmonic analysis method was used to fit the tidal (M2) component and separate the flow into two components: the tidal and residual (M2-removed) flows. We applied this method to depth-averaged data. Results show that the M2 component demonstrates over 95% of the variability of observation data. As the flow was dominated by the M2 tidal component in a narrow channel, the tidal ellipse distribution was essentially a back-and-forth motion. The amplitude of M2 velocity component increased slightly from the river mouth (0.45 m/sec) to land (0.6 m/sec) and the phase showed fairly constant values in the center of the channel and rapidly decreasing values near the northern and southern shoaling areas. The residual flow and transport calculated from depth-averaged flow shows temporal variability over the tidal time scale. Strong landward flows appeared during slack waters which may be attributed to increased baroclinic forcing when turbulent mixing decreases.

Variations of turbulent flow with river discharge in the Altamaha River Estuary, Georgia

Turbulent flow characteristics under two significantly different river discharge periods were studied in the Altamaha River Estuary, Georgia, using a variety of moored instrumentation, combined with detailed water column profiling from an anchored vessel. Estimates of the Reynolds stress, shear production (P), and dissipation rate (ɛ) were derived and compared for the two contrasting river conditions which essentially characterized the estuary as weakly stratified during low discharge (2001) and partially mixed during high discharge (2003). Wave effects were removed from the measurement of turbulent kinetic energy (TKE) using a linear filtration method and a −5/3 slope was fit for an indirect measurement of ɛ. We suggest two possible mechanisms for observed flood/ebb asymmetries in the shear production of energy: wave‐induced bottom roughness change or the competing effects of the barotropic and baroclinic pressure gradients. For 2001 the buoyancy flux was estimated by calculating the dissipation of temperature variance from rapidly sampled temperature time series over two different tidal cycles. The mixing efficiency Γ approached 0.25 but was on average 0.05. The mixing rate depended on the flow and stratification with highest values of 200 cm2/s during maximum flow and weakest stratification and lowest values of 0.1 cm2/s during low flow and greater stratification. A balance of production and dissipation of energy was achieved only during ebb tide in 2001, implying that turbulent transport of TKE maybe a consideration since buoyancy dissipation is too small for 2001 and would only enhance the imbalance further in 2003 because of strong stratification that exists during the flood and ebb tide.

Depth- and current-induced effects on wave propagation into the Altamaha River Estuary, Georgia

A study of sea surface wave propagation and its energy deformation was carried out using field observations and numerical experiments over a region spanning the midshelf of the South Atlantic Bight (SAB) to the Altamaha River Estuary, GA. Wave heights on the shelf region correlate with the wind observations and directional observations show that most of the wave energy is incident from the easterly direction. Comparing midshelf and inner shelf wave heights during a time when there was no wind and hence no wave development led to an estimation of wave energy dissipation due to bottom friction with corresponding wave dissipation factor of 0.07 for the gently sloping continental shelf of the SAB. After interacting with the shoaling region of the Altamaha River, the wave energy within the estuary becomes periodic in time showing wave energy during flood to high water phase of the tide and very little wave energy during ebb to low water. This periodic modulation inside the estuary is a direct result of enhanced depth and current-induced wave breaking that occurs at the ebb shoaling region surrounding the Altamaha River mouth at longitude 81.23°W. Modelling results with STWAVE showed that depth-induced wave breaking is more important during the low water phase of the tide than current-induced wave breaking during the ebb phase of the tide. During the flood to high water phase of the tide, wave energy propagates into the estuary. Measurements of the significant wave height within the estuary showed a maximum wave height difference of 0.4 m between the slack high water (SHW) and slack low water (SLW). In this shallow environment these wave–current interactions lead to an apparent bottom roughness that is increased from typical hydraulic roughness values, leading to an enhanced bottom friction coefficient.

A comparison of residence time calculations using simple compartment models of the Altamaha River estuary, Georgia

The residence and flushing times of an estuary are two different concepts that are often confused. Flushing time is the time required for the freshwater inflow to equal the amount of freshwater originally present in the estuary. It is specific to freshwater (or materials dissolved in it) and represents the transit time through the entire system (e.g., from head of tide to the mouth). Residence time is the average time particles take to escape the estuary. It can be calculated for any type of material and will vary depending on the starting location of the material. In the literature, the term residence time is often used to refer to the average freshwater transit time and is calculated as such. Freshwater transit time is a more precise term for a type of residence time (that of freshwater, starting from the head of the estuary), whereas residence time is a more general term that must be clarified by specifying the material and starting distribution. We explored these two mixing time scales in the context of the Altmaha River estuary, Georgia, and present a comparison of techniques for their calculation (fraction of freshwater models and variations of box models). Segmented tidal prism models, another common approach, have data requirements similar to other models but can be cumbersome to implement properly. Freshwater transit time estimates from simple steady-state box models were virtually, identical to flushing times for four river-flow cases, as long as boxes were scaled appropriately to river flow, and residence time estimates from different box models were also in good agreement. Mixing time estimates from box models, were incorrect when boxes were imporperly scaled. Mixing time scales vary nonlinearly with river flow, so characterizing the range as well as the mean or median is important for a thorough understanding of the potential for within-estuary processing. We are now developing an imporved box model that will allow the calculation of a variety of mixing time scales using simulations with daily variable river discharge.

Variability in the distribution of lipid biomarkers and their molecular isotopic composition in Altamaha estuarine sediments: implications for the relative contribution of organic matter from various sources

The estuarine mixing zone is an effective trap for particulate and dissolved organic matter from many sources, and thus greatly affects transport and deposition of organic matter between the land and ocean. This study examined sedimentary distributions of various fatty acids and their stable isotope compositions at three sites which represent different levels of mixing in the Altamaha River estuary, Georgia, USA. Distributions of other neutral lipids (phytol, C14–C32 fatty alcohols, and two sterols) were also determined as supplementary biomarkers from various sources. Results suggest that POM from terrestrial plant material was dominant at an initial, upper estuary mixing zone (salinity in the water column is near zero but porewater in the sediment is saline) while POM from marine sources was mainly deposited at a more intensive mixing zone (wherein salinity in surface and bottom waters was identical) in the Altamaha. Much less particulate lipid was deposited in Altamaha River mouth sediments even during the high discharge season, suggesting that terrestrial plant-derived POM may not be significantly transported across the mixing zone. Analyses of fatty acid isotopic composition further verify the differential deposition pattern of POM from different sources.

Depositional Processes and the Navajo Sandstone

Comparison of a vertical sequence of sedimentary and biogenic structures, grain size distributions, and lithologies suggests a similarity between the Altamaha River Estuary, Georgia, and an outcrop of the Navajo Sandstone near Woodside, Utah. Direct comparison between a Holocene environment and the characteristics of the ancient sandstone unit provided the basis for the suggested environmental interpretation.