AbstractSeedling establishment is crucial for elevational advance of tree species above the treeline ecotone, but the characteristics and availability of safe sites for tree regeneration in alpine ecosystems are not well understood. To better understand the potential of treeline ecotones to show infilling or upward shifts, we assessed microsite preferences of the conifers Larix decidua, Pinus uncinata, and Pinus cembra in upper treeline ecotones with different bedrock chemistry in the French Alps. At each of two sites on calcareous and two on siliceous bedrock, we compared microsites of 50 tree individuals to 50 randomly-selected reference microsites, considering substrate, ground cover, topography, and shelter proximity. In addition, we related these characteristics with the health of the individuals. We found that the three species were established in similar microsites, usually with some shelter. The occupied microsites reflected the available microsites in the area, but certain extreme microsite types remained unoccupied. Most individuals had a krummholz form or were bent, while only a small proportion presented signs of recent mechanical damage, desiccation, snow mold or herbivory, independent of microsite characteristics. Our study shows that the availability of safe sites unlikely limits the establishment of these conifers in the studied sites, suggesting that, instead, seed availability may be a major limitation for tree establishment in these alpine-treeline ecotones. Even in safe sites, the harsh alpine conditions limit the development of tree-species individuals into tree stature, but the strong recent length growth observed suggests favorable conditions for eventual tree expansion in and above current treeline ecotones.