Alosa Research Articles

Viability of high-frequency environmental DNA (eDNA) sampling as a fish enumeration tool

Despite growing interest in environmental DNA (eDNA) monitoring as a low-cost, non-invasive tool for monitoring fish presence and relative abundance, quantitative comparisons between fish abundance and eDNA are still rare, especially for anadromous species of conservation concern. To examine the relationship between eDNA data and management-relevant abundance data, we assessed eDNA abundance of river herring, an ecologically relevant anadromous sister-species pair, alongside sonar-generated fish counts at a well-characterized site in the Choptank River, Chesapeake Bay, MD. Over the 2021 spawning season, there was a strong correlation between daily eDNA concentration and daily counts of fish swimming upstream (Spearman’s rho = 0.86). A generalized additive model for location scale and shape (GAMLSS) was used to estimate fish count as a function of flow-corrected eDNA concentration and relevant covariates. Model- and sonar-generated run counts were 729,385 and 733,208 fish respectively, differing by just 0.5 %. A sub-sampling analysis showed that a model built on at least five weeks of data could utilize eDNA abundance to produce accurate estimates for the remainder of the season, while a reduction in eDNA sampling frequency substantially reduced run count accuracy. This work emphasizes the utility of quantitative eDNA monitoring for river herring populations and shows the necessity of high-frequency eDNA sampling to estimate run count.

Migratory passage and run size of American Shad and river herring in the Raritan River, New Jersey, USA

AbstractObjectiveRestoration of many populations of anadromous American Shad Alosa sapidissima and river herring (Alewife A. pseudoharengus and Blueback Herring A. aestivalis) has been hampered by the presence of barriers to their spawning migrations and insufficient monitoring of run size. Here, we describe results of a 10‐year (2012–2021) study of American Shad and river herring passage at the Island Farm Weir (IFW), the downstream‐most migration barrier on the Raritan River, New Jersey, United States.MethodsWe used passive integrated transponder tags applied to fish that were captured and released downstream of the IFW to estimate passage rates and migration delays associated with upstream movements through an antenna array on a vertical slot fishway within the weir. By combining estimated passage rates with video monitoring of the total numbers of American Shad and river herring transiting the fishway, we estimated the annual run size below the weir.ResultResults suggest that the fishway on the IFW is moderately effective for American Shad (passage rate = 41%; 95% credible interval [CI] = 21–61%) but ineffective for the smaller‐bodied river herring (passage rate = 0.5%, 95% CI = 0–2%; fallback‐adjusted passage rate = 1.1%, 95% CI = 0.0–4.5%). The IFW may have also delayed the spawning migrations of those fish that did pass, with total passage times ranging from 0.4 to 20.9 days (mean ± standard deviation = 8.2 ± 5.3 days) for American Shad and 15.0 days for the one river herring that passed within the same year that it was tagged. Run size estimates during the study period ranged from 103 to 2624 individuals for American Shad and from 1486 to 53,334 for river herring.ConclusionRestoration of these species in the Raritan River will likely require removal of the IFW or replacement of its current fish passage device with one that increases the passage rates of alosines.

A video monitoring and computational system for estimating migratory juvenile fish abundance in river systems

AbstractDiadromous fishes migrate between marine and fresh waters for reproduction. For anadromous species, which spawn in freshwater, improved access to freshwater spawning and nursery habitats and ability of juveniles to emigrate to the ocean may support population recovery. Despite the potentially enormous influence of early life stage survival on adult population size, managers and scientists have limited capacity to assess numbers of juvenile anadromous fishes leaving freshwater ecosystems. Such data are critical for evaluating reproductive success and habitat suitability and have been identified as a top priority in anadromous fish research and management. We developed a state‐of‐the‐art underwater video and computational system to collect videos to estimate abundances and migration timing for juvenile river herring (Alosa pseudoharengus; Alosa aestivalis). We collected continuous video in the Monument River (Bourne, Massachusetts, USA) from June to November 2017. We trained three types of neural network models to detect and count fish in video frames and evaluated model performance by comparing human counts to model outputs. Our top model assessed presence and absence (F1 = 87%) and counted fish (counting error 9.4%) with an accuracy comparable to human counters (F1 = 88%). Our system's capability to collect accurate counts of emigrating juveniles will provide critical information that could be related to the numbers of spawning adults, system‐specific productivity, and spawning and nursery habitat suitability. Both the video collection system and computational model may be transferrable to other sites and for other species where tracking juvenile emigration may inform management efforts.

Waiting for the right time and tide: The fine‐scale migratory behavior of river herring in two coastal New England streams

AbstractObjectiveAlewife Alosa pseudoharengus and Blueback Herring A. aestivalis, collectively referred to as river herring, are anadromous clupeids inhabiting the North American Atlantic coast. Although the seasonal patterns of their spawning migration are well studied and predictable, the fine‐scale movements are still poorly resolved.MethodsThis study used high‐resolution acoustic imaging to study the fine‐scale behavior of river herring during their spring spawning migration in two coastal rivers in Massachusetts, United States.ResultObservations suggest that seasonal patterns of migration appear to be influenced by temperature, while fine‐scale patterns in migration were associated with the time of day, tidal state, and their interaction. River herring were consistently observed during both day and night, with elevated peaks of activity in the early morning and late afternoon. Daytime movement consisted of the intermittent passage of large, dense schools, while nighttime movement consisted of the frequent passage of individuals or small groups. The highest numbers of herring observations were associated with flood and high tides. Additionally, the interactions between time of day and tidal state resulted in synergistic positive effects during crepuscular incoming tides, which were favorable to movement, and synergistic negative effects during midday low tides, which inhibited fish movement.ConclusionThe changing relationship between the time of day and tidal state within the season manifested in changing periodicity in fish movement to correlate with favorable movement conditions. Since movements may be related to both time of day and tide, previous run size estimates from visual counts made only during the day may be too low. Sampling methodologies that collect information during all 24 h would likely produce the most accurate run size estimates. This study highlights the need to view river herring migration in a holistic context predicated by multiple environmental and biological factors that vary at several temporal scales (i.e., seasonally, daily, and hourly).

Forecasting hydrologic controls on juvenile anadromous fish out-migration with process-based modeling and machine learning

River herring (Alosa sp.) are ecologically and economically foundational species in freshwater streams, estuaries, and oceanic ecosystems. The migration between fresh and saltwater is a key life stage of river herring, where the timing and magnitude of out-migration by juveniles can be limited when streams dry and hydrologic connectivity is lost. Operational decisions by water managers (e.g., restricting community water use) can impact out-migration success; however, these decisions are largely made without reliable predictions of outmigration potential across the migration season. This research presents a model to generate short-term forecasts of the probability of herring out-migration loss. We monitored streamflow and herring out-migration for 2 years at three critical runs along Long Island Sound (CT, USA) to develop empirical understandings of the hydrologic controls on out-migration. We used calibrated Soil and Water Assessment Tool hydrologic models of each site to generate 10,000 years of daily synthetic meteorological and streamflow records. These synthetic meteorological and streamflow data were used to train random forest models to provide rapid within-season forecasts of out-migration loss from two simple predictors: current spawning reservoir depth and the previous 30-day precipitation total. The resulting models were approximately 60%–80% accurate with a 1.5-month lead time and 70–90% accurate within 2 weeks. We anticipate that this tool will support regional decisions on spawning reservoir operations and community water withdrawals. The architecture of this tool provides a framework to facilitate broader predictions of the ecological consequences of streamflow connectivity loss in human-impacted watersheds.

Automated acoustic detection of river herring (Alewife and Blueback Herring) spawning activity

AbstractObjectiveWe used passive acoustic monitoring (PAM) and automatic detection of spawning splashes to examine the timing and environmental drivers of spawning in river herring (Alewife Alosa pseudoharengus and Blueback Herring A. aestivalis).MethodsAcoustic recordings of spawning splashes were collected from March to May 2021 in the Choptank River, Maryland, using an AudioMoth recorder. Recordings were analyzed using a random forest model on the Rainforest Connection ARBIMON platform to determine hourly presence–absence of splashes.ResultAt a seasonal scale, our results suggested two peaks in spawning activity: early March and mid‐April, corresponding with the known phenologies of Alewife and Blueback Herring. Hourly patterns in spawning activity suggested distinct diel cycles, with spawning most concentrated at dawn. In contrast, sonar fish counts collected for 1 week during the season indicated that migration occurred throughout daylight hours. We also found a potential relationship between spawning activity and the presence of great blue herons Ardea herodias.ConclusionOverall, our results demonstrate that PAM can be an efficient and affordable method for studying the spawning ecology of anadromous fish.

Passage Efficiency of Alewife in a Denil Fishway Using Passive Integrated Transponder Tags

AbstractPopulations of river herring (Alewife Alosa Pseudoharengus and Blueback Herring A. aestivalis, collectively), once abundant in coastal rivers along the Atlantic coast, have seen precipitous population declines, likely due to many factors, including commercial fishing, habitat degradation, and dam construction. Efforts to restore populations include the construction of fishways at dams, but upstream passage success of fish through fishways is variable. To evaluate passage efficiency of a fishway on the Lamprey River in Newmarket, New Hampshire, Alewives were PIT tagged in 2013 (n = 621) and 2014 (n = 501) and antennas monitored fish in 2013–2015. Potential handling effects, diel movement patterns, and fishway saturation negatively affected passage success. The probability of Alewives successfully passing through the fishway into the river above the dam increased with total length. The estimated probability of passage success of an Alewife of mean total length (280 mm and 292 mm for males and females, respectively) that migrated back to the dam at least 1 year after tagging was 0.63 for males and 0.64 for females. Fishway selectivity presents a potential bias in data collection in freshwater systems, and our results suggest that sampling below a fishway should be coupled with data collected from within and above the fishway for a more complete demographic sample of the migratory population.

Early detection and recovery of river herring spawning habitat use in response to a mainstem dam removal.

Historical loss of river and stream habitats due to impassable dams has contributed to the severe decline of many fish species. Anadromous fishes that migrate from the sea to freshwater streams to spawn have been especially impacted as dams restrict these fish from accessing ancestral spawning grounds. In 2018, Bloede Dam was removed from the Patapsco River near Baltimore, Maryland, restoring approximately 100 km of potential habitat for migratory fish. We assessed the response of anadromous river herring, alewife (Alosa pseudoharengus) and blueback herring (Alosa aestivalis), to this dam removal by monitoring environmental DNA (eDNA) and eggs from 2015 to 2021 at locations upstream and downstream of the dam site during their spawning migrations. We additionally assessed the presence of fish by collecting electrofishing samples and tracked the movements of individual adult fish within the river using passive integrated transponder (PIT) tags. No adult river herring, eDNA, or eggs were detected upstream of Bloede Dam in the four years prior to its removal despite the presence of a fish ladder. Our results suggest initial habitat use recovery by spawning river herring in the first year post-removal, although a relatively small proportion of the population in the river used the newly accessible habitat. In the three years post-removal, the likelihood of detecting river herring eDNA upstream of the former dam site increased to 5% for alewife and 13% for blueback herring. Two adult fish were also collected in electrofishing samples upstream of the dam site in 2021. We found no evidence of changes in egg abundance and no tagged fish were detected upstream of the dam site post-removal. While long term monitoring is needed to assess population changes, this study highlights the value of integrating methods for comprehensive understanding of habitat use following dam removal.

Developing a subseasonal ecological forecast to reduce fisheries bycatch in the Northeast U.S.

Over the past decade, substantial progress has been made in projecting and predicting the spatial distribution of many marine species at seasonal to multidecadal time scales. However, managers and fishers often need to make decisions at much shorter time scales. Subseasonal environmental forecasts, which generate predictions over one to several weeks, can now be combined with species-specific habitat preference data to create ecological forecasts that could facilitate dynamic spatial management. The development of such predictive tools could aid in identifying optimal times and areas for fishers to maximize target catch and avoid nontarget catch. Nontarget catch, or bycatch, can have numerous and potentially severe economic and ecological consequences. Here, we focus on a population of anadromous fish known collectively as river herring (alewife and blueback herring), as they are species of concern and are heavily impacted by bycatch. Using bottom trawl survey data from the Northeast US and subseasonal forecasts of sea surface temperature, we constructed a bycatch risk model to generate probabilistic predictions of river herring distributions in regions frequented by the US mid-water trawl fishery. Assessments of model skill showed that our ecological model performed well in predicting the distribution of river herring and that subseasonal forecasts were effective at 1-week timeframes. There was a clear seasonal effect on forecasted bycatch risk throughout the Northeast US, with particularly high risk in winter and spring months. Importantly, variability in risk was detectable at the weekly timescale and our model identified specific areas and times that fishers should avoid in order to decrease their likelihood of bycatch. The bycatch risk forecast developed in this study is a significant advance from near-real time forecasts and the foundation to build forecast systems by combining species co-occurrence models with subseasonal forecasts. As these subseasonal forecasts are available globally, this approach could be adapted to facilitate the management of other natural resource conflicts around the world.

Spatial and temporal genetic stock composition of river herring bycatch in southern New England Atlantic herring and mackerel fisheries

Anadromous river herring (alewife and blueback herring) persist at historically low abundances and are caught as bycatch in commercial fisheries, potentially preventing recovery despite conservation efforts. We used newly established single-nucleotide polymorphism genetic baselines for alewife and blueback herring to define fine-scale reporting groups for each species. We then determined the occurrence of fish from these reporting groups in bycatch samples from a Northwest Atlantic fishery over four years. Within sampled bycatch events, the highest proportions of alewife were from the Block Island (34%) and Long Island Sound (22%) reporting groups, while for blueback herring the highest proportions were from the Mid-Atlantic (47%) and Northern New England (24%) reporting groups. We then quantified stock-specific mortality in a focal geographic area (∼3500 km2, including Block Island Sound) of high bycatch incidence and sampling effort, where the most accurate estimates of mortality could be made. During this period, we estimate that bycatch took about 4.6 million alewife and 1.2 million blueback herring, highlighting the need to reduce bycatch mortality for the most depleted river herring stocks.

Environmental DNA reveals anadromous river herring habitat use and recolonization after restoration of aquatic connectivity

AbstractRestoring and sustaining anadromous fish populations is a grand challenge in the conservation of freshwater ecosystems. Alewife Alosa pseudoharengus and Blueback Herring Alosa aestivalis are two closely related anadromous fish for which responses to fish passage restoration are poorly known. We used a targeted environmental DNA method to sample 17 major tributaries of the Chesapeake Bay, USA, to determine the spatial extent of habitat use during the spawning season and the associations of habitat use with watershed characteristics. To help understand responses to restoration of fish passage, the study included portions of eight watersheds where dam removals, fish ladders, or dam failures provided access to habitats that were previously inaccessible to anadromous fish. Overall, 27.5% of samples showed positive detections for river herring, including at least one sample in 16 of 17 tributaries sampled. The presence of both species combined was negatively associated with elevation (relative influence [RI] = 29.8%) and positively associated with a watershed area (RI = 14.5%) and percent cropland (13.6%) of the watershed. In species‐specific analyses, both Alewife (RI = 24.8%) and Blueback Herring (26.2%) presence was negatively associated with elevation, Alewife were more common in watersheds with high percentages of cropland (RI = 19.1%), whereas Blueback Herring were more common in streams with large watersheds (23.2%). The use of formerly blocked spawning habitats was generally greater upstream of sites where dams were removed (2%–100% of habitat used) compared with sites where fish ladders were installed (0%–66.8% of habitat used). The broad‐scale sampling enabled by eDNA methods made it possible to identify habitat use patterns that can be applied to prioritize future restoration efforts and predict species‐specific responses.

Managing Small Fish at Large Scales: The Emergence of Regional Policies for River Herring in the Eastern United States

Anadromous Alewives Alosa pseudoharengus and Blueback Herring A. aestivalis, collectively known as “river herring,” provide ecosystem services to coastal communities in the Eastern United States. Despite traditions of community‐based stewardship, many populations exhibit long‐term declines. Their name notwithstanding, river herring spend most of their lives at sea and stray among natal rivers. Therefore, absence of management above individual rivers can compromise population viability, local conservation investments, and ecosystem services. Large‐scale management in the USA was achieved for the first time during 2007–2015 by amending three Fishery Management Plans and creating a broader River Herring Conservation Plan following an Endangered Species Act petition. Concurrently, an international restoration plan for river herring in the St. Croix River on the USA–Canada border was adopted. A survey of stakeholder organizations in New England during this period revealed widespread concern for stressors managed at different scales, but that most action was directed locally. Stakeholder collaboration networks were clustered within states and around loose regional hubs, matching the scales of stakeholder concerns and actions. Unfortunately, river herring face growing threats linked to climate change, effects of which will be felt at local and regional scales, while effective mitigation will require actions at national and global scales.

COI amplicon sequence data of environmental DNA collected from the Bronx River Estuary, New York City

In this data paper, we describe environmental DNA (eDNA) cytochrome c oxidase (COI) amplicon sequence data from New York City’s Bronx River Estuary. As urban systems continue to expand, describing and monitoring their biodiversity is increasingly important for sustainability. Once polluted and overexploited, New York City’s Bronx River Estuary is undergoing revitalization and restoration. To investigate and characterize the area’s diversity, we collected and sequenced river sediment and surface water samples from Hunts Point Riverside and Soundview Parks (ntotal = 48; nsediment = 25; nwater = 23). COI analysis using universal primers mlCOIintF and jgHCO2198 detected 27,328 Amplicon Sequence Variants (ASVs) from 7,653,541 sequences, and rarefaction curves reached asymptotes indicating sufficient sampling depth. Of these, eukaryotes represented 9,841ASVs from 3,562,254 sequences. At the study sites over the sampling period, community composition varied by substrate (river sediment versus surface water) and with water temperature, but not pH. The three most common phyla were Bacillariophyta (diatoms), Annelida (segmented worms), and Ochrophyta (e.g. brown and golden algae). Of the eukaryotic ASVs, we identified 614 (6.2%) to species level, including several dinoflagellates linked to Harmful Algal Blooms such as Heterocapsa spp., as well as the invasive amphipod Grandidierella japonica. The analysis detected common bivalves including blue (Mytilus edulis) and ribbed (Geukensia demissa) mussels, as well as soft-shell clams (Mya arenaria), in addition to Eastern oysters (Crassostrea virginica) that are being reintroduced to the area. Fish species undergoing restoration such as river herring (Alosa pseudoharengus, A. aestivalis) failed to be identified, although relatively common fish including Atlantic silversides (Menidia menidia), menhaden (Brevoortia tyrannus), striped bass (Morone saxatilis), and mummichogs (Fundulus heteroclitus) were found. The data highlight the utility of eDNA metabarcoding for analyzing urban estuarine biodiversity and provide a baseline for future work in the area.

A Review of River Herring Science in Support of Species Conservation and Ecosystem Restoration

AbstractRiver herring—a collective name for the Alewife Alosa pseudoharengus and Blueback Herring A. aestivalis—play a crucial role in freshwater and marine ecosystems along the Eastern Seaboard of North America. River herring are anadromous and return to freshwater habitats in the tens to hundreds of millions to spawn, supplying food to many species and providing nutrients to freshwater ecosystems. After two and a half centuries of habitat loss, habitat degradation, and overfishing, river herring are at historic lows. In 2013, National Oceanic and Atmospheric Administration Fisheries established the Technical Expert Working Group (TEWG) to synthesize information about river herring and to provide recommendations to advance the science related to their restoration. This paper was composed largely by the chairs of the TEWG subgroups and represents a review of the current state of knowledge of river herring, with an emphasis on identification of threats and discussion of recent research and management actions related to understanding and reducing these threats. Important research needs are then identified and discussed. Finally, current knowledge is synthesized, considering the relative importance of different threats. This synthesis identifies dam removal and increased stream connectivity as critical to river herring restoration. Better understanding and accounting for predation, climate change, and fisheries are also important for restoration. Finally, there is recent evidence that the effects of human development and contamination on habitat quality may be more important threats than previously recognized. Given the range of threats, an ecosystem approach is needed to be successful with river herring restoration. To facilitate this ecosystem approach, collaborative forums such as the TEWG (renamed the Atlantic Coast River Herring Collaborative Forum in 2020) are needed to share and synthesize information among river herring managers, researchers, and community groups from across the species’ range.

Myxozoan parasites vary in river herring according to life history stage and habitat.

Anadromous river herring have declined in many parts of their range, leading to fisheries management efforts to help repopulate this species by improving connectivity of rivers and restoring populations by fish transfers. With data lacking on parasites in these species, this study sought to better understand myxozoans across various life stages and habitats in river herring populations in New Jersey, USA. We compared fish from riverine habitats during early-life growth and adults returning to spawn, marine-phase fish, and landlocked Alewife populations. Three myxozoan species were identified in young-of-the-year (YOY) anadromous river herring, including Kudoa clupeidae in the skeletal musculature, Myxobolus mauriensis in the rib cartilage, and an uncharacterized coelozoic myxozoan within the lumen of mesonephric tubules. In YOY river herring, Blueback Herring were 2 times more likely to be infected by K. clupeidae than Alewife (p = 0.019) and in the Maurice River, fish were 4 times more likely to be infected with M. mauriensis than fish from Great Egg Harbor River (p = 0.000) and 11 times more likely than the Delaware River (p = 0.001). Spawning adult river herring were infected with a previously undescribed myxozoan parasite infecting the kidney. Sequencing the 18S rDNA indicated this species is closely related to Ortholinea species. Myxobolus mauriensis and the Ortholinea-like species were absent from marine-phase river herring indicating that infections were linked to river environments occurring during early-life growth and spawning, respectively. No myxozoans were present in landlocked Alewife, showing that similar infections occurring in rivers were absent in lake environments in the region.

Culverts delay upstream and downstream migrations of river herring (Alosa spp.)

AbstractAlewife (Alosa pseudoharengus) and blueback herring (Alosa aestivalis) are iteroparous anadromous fish found throughout the East Coast of North America. The phenology of anadromous fish migrations is important for fitness, and the duration of spawning migrations has been compressed in recent years in response to climate change. Anthropogenic barriers to movement, such as dams and culverts at road‐stream crossings, can further disrupt migration phenology by delaying movement and increasing predation risk. We used passive integrated transponder (PIT) telemetry to quantify upstream and downstream migratory delay at five road‐stream‐crossing culverts on the Herring River (MA, USA). Groundspeeds were reduced at all culverts in both directions, confirming that the culverts impede movement despite high passage proportions. The cumulative delay of the culverts on the upstream migration was sufficient to more than double the amount of time required to traverse the river if the culverts had been absent. Furthermore, the presence of snapping turtles (Chelydra serpentina) ambushing river herring within one of the culverts resulted in reduced passage rates beyond the reduction in movement caused by the physical structure itself. This highlights that physical barriers can create cascading ecological consequences and the importance of taking a holistic approach to understanding barrier effects.

Contrasting fishing effort reduction and habitat connectivity as management strategies to promote alewife (Alosa pseudoharengus) recovery using an ecosystem model

AbstractSmall pelagics, or forage fish, link lower and higher trophic levels in marine food webs. Recently, attention has been given to the management of forage fish, including anadromous river herring (Alewife Alosa pseudoharengus, blueback herring A. aestivalis) and American shad (A. sapidissima) due to their current depleted status and historically important ecological and economic roles. Little is known about the impact of changes in their biomass on marine food webs and what management practices will promote their recovery. Estimated historical riverine productivity was utilized to evaluate potential ecosystem impacts of the increasing river to ocean connectivity to resemble 19th‐century conditions. The Ecopath with Ecosim modeling framework was used to simulate management strategies, focused on anadromous forage fish, by creating scenarios of fisheries reduction (mixed fishery effort reduction) and river to ocean habitat connectivity (75% of historical connectivity achieved). Sixty‐year simulations covered the entire time series including a 36‐year forecast period to evaluate the ecosystem impacts of management strategies. Results suggest nonlinear relationships and large changes in biomass flows from forage fish to upper trophic levels in the Gulf of Maine ecosystem. Increases in biomass were observed for pelagic sharks, demersal piscivores, and species of conservation concern such as pinnipeds and seabirds, although overall results were strongly influenced by indirect trophic effects. Promoting anadromous forage fish recovery through increased connectivity resulted in the redundancy of marine ecosystem niches that would increase resilience to climate, fisheries, and other perturbations. This study highlights the value of employing ecosystem models for testing management scenarios to contrast different approaches to recover anadromous forage fish towards its former ecological prominence.

Evidence of Life Cycle Diversity of River Herring in the Penobscot River Estuary, Maine

AbstractAlewife Alosa pseudoharengus and Blueback Herring A. aestivalis—collectively referred to as river herring—exhibit complex life histories, exploiting freshwater and marine biomes to complete their life cycles. We investigated distribution patterns of river herring in the Penobscot River estuary, Maine, USA, from April through September in 2012 and 2013 and found both species in relatively low‐salinity portions of the estuary in all months sampled. River herring made up the majority of samples in terms of abundance and biomass for most months. We developed age–length keys for monthly catches and found consistent presence of age‐1 and age‐2 river herring, especially during spring. We found seasonal patterns in age distribution with age‐1 fish and older most abundant in spring and summer and age‐0 fish only occurring in late summer through fall. These observations provide direct evidence of life cycle diversity for juvenile river herring, complementing other recent observations in other parts of their native range. Lastly, our findings suggest further consideration should be given to the importance of connectivity between marine, estuarine, and freshwater habitats for age‐1 and age‐2 river herring and to the more complex ecological roles of age‐1 and age‐2 river herring given their intermediate trophic level and presence in relatively fresh components of the Penobscot River estuary.

Activity Patterns of Anadromous Fish below a Tide Gate: Observations from High‐Resolution Imaging Sonar

AbstractThe construction of dams and tide gates on waterways has altered the physical structure of many coastal, estuarine, and freshwater systems. These changes have come at a cost to fish populations, most notably diadromous species, which rely on connectivity between marine and freshwater systems. These anthropogenic structures can have direct effects on migrating fish, such as blocking fish passage, or have more subtle effects, such as changing movement patterns. This study used a high‐resolution Adaptive Resolution Imaging Sonar to examine the behavior of Striped Bass Morone saxatilis, a large coastal predator, and Alewife Alosa pseudoharengus and Blueback Herring Alosa aestivalis (collectively known as river herring), which are forage fish, below a tide gate structure on the Herring River in Wellfleet, Massachusetts, during the river herring spring spawning run. Striped Bass were persistently present downstream of the tide gate and exhibited strong diurnal and tidal patterns. Activity of Striped Bass was highest at night and during ebb tides. During peak outflow periods, river herring were observed milling downstream of the dam in a scour pool, indicating delayed upstream passage. River herring upstream migration was primarily associated with daytime and during incoming tides. Downstream‐migrating river herring were primarily observed during nighttime hours. While it was documented that the tide gates provided a physical impediment to migration, their effect on predator behavior could pose an additional challenge to migrating river herring, further complicating their recovery efforts. Due to the prevalence of obstructed waterways, studying the behavior of fish around anthropogenic structures is important in understanding the full range of impacts that these systems have under varying ecological conditions and on ecological relationships.

Daily Patterns of River Herring (Alosa spp.) Spawning Migrations: Environmental Drivers and Variation among Coastal Streams in Massachusetts

AbstractThe timing of life history events in many plants and animals depends on the seasonal fluctuations of specific environmental conditions. Climate change is altering environmental regimes and disrupting natural cycles and patterns across communities. Anadromous fishes that migrate between marine and freshwater habitats to spawn are particularly sensitive to shifting environmental conditions and thus are vulnerable to the effects of climate change. However, for many anadromous fish species the specific environmental mechanisms driving migration and spawning patterns are not well understood. In this study, we investigated the upstream spawning migrations of river herring Alosa spp. in 12 coastal Massachusetts streams. By analyzing long‐term data sets (8–28 years) of daily fish counts, we determined the local influence of environmental factors on daily migration patterns and compared seasonal run dynamics and environmental regimes among streams. Our results suggest that water temperature was the most consistent predictor of both daily river herring presence–absence and abundance during migration. We found inconsistent effects of streamflow and lunar phase, likely due to the anthropogenic manipulation of flow and connectivity in different systems. Geographic patterns in run dynamics and thermal regimes suggest that the more northerly runs in this region are relatively vulnerable to climate change due to migration occurring later in the spring season, at warmer water temperatures that approach thermal maxima, and during a narrower temporal window compared to southern runs. The phenology of river herring and their reliance on seasonal temperature patterns indicate that populations of these species may benefit from management practices that reduce within‐stream anthropogenic water temperature manipulations and maintain coolwater thermal refugia.