ABSTRACT Reducing expenses is a critical aspect of natural resource explorations, especially in the reconnaissance stage. Accordingly, GIS algorithms using the free remote sensing data were used to rank the probable mineralised zones before any future implementations of the high-cost drilling and/or detailed geophysical programmes. Geological and tectonic settings, and being a historical mineral resource were motivations to choose the Allaqi-Heiani Suture (AHS), Upper Egypt, as a study area. Remote sensing data were processed for tracing the probably mineralised alteration zones, determining fractures and dominating structural systems, and mapping different geological units. Various alteration minerals including hydroxyls–carbonates, ferrous and ferric iron oxides were detected over different rock units using band ratio (BR) and Crosta techniques. Different geological units were distinguished using false colour composite (FCC) images. Moreover, an intense fractured system, demonstrating the area, was revealed by tracing lineaments using informative, spatially enhanced remote-sensed images. Fractures within the altered rocks represent 35% of the total fracturing system in the AHS to indicate a structural system controlling mineralisation occurrences. The processing of magnetic data suggested a deep/buried nature of these remotely detected lineaments/structures. Reduced to pole (RTP) and tilt derivative (TDR) maps detected the buried magnetic sources, whereas zero contours of TDR, Euler deconvolution, analytic signal and source parameter imaging (SPI) techniques traced buried contacts/structures and estimated their depths. A GIS strategy depending on the intensity of the fracturing system and the presence of more than one type of alteration was applied to potential-rank the prospective mineralised occurrences over AHS. The correlation between ranked zones with the old/known mines showed encouraging evaluation.