Alkynyl Groups Research Articles

Pentamethine cyanine dyes with alkynyl group as perspective structure for conjugation with targeting moiety

We report a modified carbocyanine-based asymmetric fluorescent dye, suitable for the azide-alkyne cycloaddition reaction, that possesses promising photochemical properties (Φfl = 0,49). As an example of usage of the new fluorophore, it was conjugated to a ligand targeting prostate-specific membrane antigen (PSMA), one of the widely utilized prostate cancer markers.

Exploring C2 and N6 Substituent Effects on Truncated 4'-Thioadenosine Derivatives as Dual A2A and A3 Adenosine Receptor Ligands.

Based on high binding affinity of truncated 2-hexynyl-4'-thioadenosine (3a) at both A2A adenosine receptor (AR) and A3 AR, we explored structure-activity relationship (SAR) of the C2-substitution by altering chain length of the 2-hexynyl moiety, thereby evaluating the hydrophobic pocket size. A series of truncated N6-substituted 4'-thioadenosine derivatives with C2-alkynyl substitution were successfully synthesized from D-mannose, using a palladium-catalyzed Sonogashira coupling reaction as the key step, whose structures were confirmed by the X-ray crystal structure of 4h. As the size of the alkynyl group at the C2-position increased, the binding affinity improved; however, when the substituted group was larger than hexynyl, the binding affinity decreased. The introduction of a bulky hydrophobic group such as 3-halobenzyl group at the free N6-amino group decreased the binding affinity at hA2AAR. These results confirm our previous findings that a free amino group at N6-position and longer hydrophobic chain at C2-position are essential for hA2A AR binding affinity. The introduction of a bulky hydrophobic group at free N6-amino group maintained the binding affinity at hA3 AR. The binding mode of truncated 2-substituted-4'-thioadenosine derivatives to hA2A and hA3 AR were predicted by a molecular docking study.

Electrochemiluminescence Biosensor for Ascorbic Acid Based on Target Transformation of Cell-Free RNA Transcription System and Duplex-Specific Nuclease-Assisted Recycling Amplification.

A cell-free RNA transcription system had been coupled with electrochemiluminescence (ECL) detection technology for the first time to develop an ascorbic acid (AA, acting as a model target) biosensor. The biosensor is composed of single-stranded DNA (ssDNA) sequences modified with alkynyl and azido groups, respectively, alongside an incomplete gene circuit framework. The addition of target AA and copper ions will cause the linkage of the two ssDNA sequences through a click chemistry reaction. This results in the subsequent reconstruction of a complete gene circuit. The reconstituted gene circuit, in conjunction with the T7 RNA polymerase, drives the transcription of substantial quantities of RNA. ssDNA labeled with ferrocene (Fc) (Fc-DNA) had been immobilized on a tris(2,2'-bipyridyl) ruthenium(II) chloride hexahydrate-doped SiO2 nanoparticle (Ru@SiO2 NPs) modified electrode first. The quenching effect of Fc on Ru@SiO2 causes the low ECL detected. The transcribed RNA sequence assisted double-stranded specific nuclease (DSN) to cut the ssDNA-Fc and the ECL of the system was enhanced. Optimal experimental conditions reveal that the ECL signal exhibits a linear correlation with the logarithmic concentration of AA, spanning a detection range from 100 nM to 1 mM, with a detection limit of 45 nM. This innovative methodology expands the utility of a cell-free RNA transcription system within the realm of biosensing applications.

Novel Vibrational Proteins.

Genetically encoded green fluorescent protein (GFP) and its brighter and redder variants have tremendously revolutionized modern molecular biology and life science by enabling direct visualization of gene regulated protein functions on microscopic and nanoscopic scales. However, the current fluorescent proteins (FPs) only emit a few colors with an emission width of about 30-50 nm. Here, we engineer novel vibrational proteins (VPs) that undergo much finer vibrational transitions and emit rather narrow vibrational spectra (0.1-0.3 nm, roughly 3-10 cm-1). In response to an amber stop codon (UAG), a terminal alkyne bearing an unnatural amino acid (UAA, pEtF) is directly incorporated in place of Tyr64 in the chromophore of pr-Kaede by genetic code expansion. Essentially, the UAA64 further conjugates into a large π system with the contiguous two editable amino acid residues (His63 and Gly65), resulting in a programmable Raman resonance shift of the embedded alkyne. In the proof-of-concept experiment, we constructed a series of novel pEtF-VP mutants and observed fine Raman shifts of the alkynyl group in different chromophores. The genetically encoded novel VPs, could potentially label tens of proteins in the future.

Wave-transparent and eco-friendly flame-retardant phosphorus-based phthalonitrile/quartz composites by a synchronized self-curing strategy with cyano and alkynyl groups

The robust human–machine interaction systems of the aerospace industry necessitate the development of thermal resistant wave-transparent composites, with a pivotal focus on organic resin matrix. However, enhancing the heat resistance of such materials while preserving other critical attributes has been a formidable challenge. In this study, a novel designed strategy of a dual-curing functional phosphorus-based phthalonitrile monomer (P-ALK-PN) has been proposed. The optimized curing temperatures for intra- or intermolecular Diels-Alder reactions of alkynyl groups and polyaddition reaction of cyano groups resulted in a homogeneous and highly crosslinked N-enriched phthalonitrile system. After curing at 450 °C, the resin, namely P-ALK-PN-450 °C, demonstrated exceptional thermal stability (T5% = 644 °C), thermo-oxidative stability (T5% = 554 °C), and char yield at 800 °C (90.7 % in N2 and 67.5 % in air). Their quartz fiber reinforced composites (P-ALK-PN/QFs) were subsequently fabricated by the hot-pressing process. Upon post-curing at 420 °C, P-ALK-PN-420 °C/QF displayed elevated glass transition temperature (550 °C), flexural strength (319 MPa), and relatively low dielectric properties with a dielectric constant (Dk) of approximately 4.2 and a dissipation factor (Df) less than 0.02 across a wide temperature ranging from 25 °C to 600 °C. Especially, it exhibited excellent flame retardancy (only a 6.7 % weight loss at ambient temperatures exceeding 1300 °C for 200 s) as well, stemming from release of eco-friendly inert gases (NH3) and formation of a graphitized protective layer during pyrolysis. These promising results highlight the potential applications of P-ALK-PN resins in aerospace and high-performance engineering fields.

Reactions of Benzyl Phosphine Oxide/Sulfide with (COCl)2: Synthesis of Novel Acyl Chloride-Substituted Chlorophosphonium Ylides.

New reactions of benzyl phosphine oxide/sulfide with oxalyl chloride are presented. The resulting reactive intermediates, acyl chloride-substituted chlorophosphonium ylides, are capable of undergoing esterification and Friedel-Crafts acylation reactions, ultimately yielding either methyl 2-(2-bromophenyl)-2-(diphenylphosphoryl)acetate or β-carbonyl-diarylphosphine oxide derivatives. Additionally, when an alkynyl group is contained in the acyl chloride-substituted chlorophosphonium ylide, intramolecular cyclization occurs, leading to the formation of a pair of trans- and cis-dichlorophosphonyl benzofulvene isomers. The generation process of acyl chloride-substituted chlorophosphonium ylide was carefully monitored by using 31P{1H} NMR spectroscopy, and a plausible reaction mechanism was proposed.

β-Silyl alkynoates: Versatile reagents for biocompatible and selective amide bond formation.

The study introduces a previously unidentified method for amide bond formation that addresses several limitations of conventional approaches. It uses the β-silyl alkynoate molecule, where the alkynyl group activates the ester for efficient amide formation, while the bulky TIPS (triisopropylsilane) group prevents unwanted 1,4-addition reactions. This approach exhibits high chemoselectivity for amines, making the method compatible with a wide range of substrates, including secondary amines, and targets the specific ε-amino group of lysine among the native amino ester's derivatives. It maintains stereochemistry during amide bond formation and TIPS group removal, allowing a versatile platform for postsynthesis modifications such as click reactions and peptide-drug conjugations. These advancements hold substantial promise for pharmaceutical development and peptide engineering, opening avenues for research applications.

A molecular design strategy to develop all‐organic crosslinked polyetherimide film with high discharged energy density at 150°C

AbstractMiniaturization and lightweight of power systems urgently ask for polymer dielectrics with high discharged energy density at 150°C. Herein, a molecular design strategy is built to prepare new crosslinkable polyetherimide films (PEIDx, x is the molar ratio of dianhydride to amines) through simultaneously improving the polarization degree and reducing the residual polarization. Thermal, mechanical, and dielectric properties of PEIDx improve as x increases. PEID0.92 shows the best integrated performances, especially its discharged energy density (5.46 J cm−3, at 10 Hz and 454 MV m−1) is higher than those of reported polymer dielectrics with discharged energy storage at 150°C, and its charge–discharge efficiency is 80.14%. The outstanding energy storage performance of PEID0.92 is attributed to its unique molecular structure. Specifically, the use of nonplanar and low‐alkaline aliphatic cyclic diamine effectively improves the polarization degree of macromolecules; while the crosslinking of alkynyl groups limits the macromolecular movement, thus ensuring high heat resistance and low residual polarization.

Comparison of Free‐Hydroxy With 3′,5′‐Di‐O‐Acetyl Ribose of 5‐Alkynyl Dicobalt Hexacarbonyl 2′‐Deoxy‐Furopyrimidines Hybrids: Synthesis, Antiproliferative Activity, and ROS Determination

ABSTRACTSynthesis of 5‐alkynyl furopyrimidine nucleoside analogs, with free‐ribose groups, was carried out, and their biological activity was evaluated. The substituents introduced at the C‐5 included propargyl and homopropargyl alcohols, 4‐methylphenyl (p‐tolyl), and 4‐pentylphenyl substituted alkynyl groups (56%–88%). Subsequently, alkyne function was coordinated to dicobalt hexacarbonyl unit, yielding the corresponding dicobalt hexacarbonyl 5‐alkynyl furopyrimidine nucleosides (51%–75%). All compounds contained 4‐pentylphenyl group attached at the C‐6 position of the bicyclic base, in line with most active antiviral structures. The antiproliferative effect of these modified nucleosides on cancer cells of different phenotypes was determined using in vitro studies. The tested compounds show antiproliferative effects with median inhibitory concentration (IC50) values of 16–23 and 9–15 μM for HeLa and K562 cells, respectively. The determination of reactive oxygen species (ROS) formation in K562 cells in the presence of modified nucleosides may suggest that the mode of action of the examined compounds may be attributed to the induction of oxidative stress.

Base-Mediated Allylic Defluorinative Functionalizations of β-CF2H-1,3-enynes Enables the Construction of Terminal Monofluoroenynes.

The base-mediated allylic defluorinative functionalization of β-CF2H-1,3-enynes with nucleophiles is described, affording terminal monofluoroalkenes bearing an alkynyl group in synthetically useful yields and Z/E selectivities. Importantly, the resultant Z/E mixture could be separated by flash chromatography in all cases; thus, stereoisomerically pure monofluoroenynes were obtained. Postsynthetic modifications of the synthesized monofluoroenynes were also accomplished to access diverse molecular structures. Computational studies disclosed the origin of the diastereoselectivity.

Realization of high performance optical power limiting (OPL) materials by introducing OPL-active metal alkynyl segments into side chains of Pt(II) polyynes

To date, it is still a great challenge to realize high optical power limiting (OPL) ability with excellent visible light transmittance at the same time for organic OPL materials. For example, the carbazole-based Pt(II) polyynes usually showed good visible light transmittance but weak OPL ability. In this work, we designed and synthesized two high performance OPL materials by introducing OPL-active metal alkynyl segments into the side chain of carbazole-based Pt(II) polyynes for the first time. Arranging metal alkynyl in side chains could effectively disrupt the π-conjugation between the polymer backbones and side chains, thus the developed polymers showed excellent visible light transmittance. In addition, with more OPL-active metal alkynyl groups in the side chain, the developed polymers were expected to show good OPL performance at the same time. To further improve the OPL performance, we utilized the triphenylamine and triarylboron groups to manipulate the involvement of the Pt(II) center in transition processes, which could effectively influence the intersystem crossing to enhance the population of triplet states. As a result, the Pt(II) polyyne CzTPA with the triphenylamine group linked to OPL-active metal alkynyl groups in side chains displayed the best OPL performance with the figure of merit σex/σo of up to 7.17, which was much higher than that of state-of-the-art OPL material C60. Therefore, this work demonstrates a promising strategy to develop high performance OPL materials possessing both strong OPL ability and impressively high visible light transmittance at the same time.

Design and Synthesis of Cyclic Dinucleotide Analogues Containing Triazolyl C-Nucleosides.

Natural cyclic dinucleotide (CDN) is the secondary messenger involved in bacterial hemostasis, human innate immunity, and bacterial antiphage immunity. Synthetic CDN and its analogues are key molecular probes and potential immunotherapeutic agents. Several CDN analogues are under clinical research for antitumor immunotherapy. A myriad of synthetic methods have been developed and reported for the preparation of CDN and its analogues. However, most of the protocols require multiple steps, and only one CDN or its analogue is prepared at a time. In this study, a strategy based on a macrocyclic ribose phosphate skeleton containing a 1'-alkynyl group was designed and developed to prepare CDN analogues containing triazolyl C-nucleosides by click chemistry. Combinatorial application of click chemistry and the sulfenylation cascade to the macrocyclic skeleton expanded the diversity of the CDN analogues. This macrocyclic skeleton strategy rapidly and efficiently provides CDN analogues to facilitate research on microbiology, immunology, and immunotherapy.

Tandem One-Pot Biocatalytic Oxidation and Wittig Reaction in Water.

We explore biocatalytic aldehyde generation under aqueous conditions, concomitantly delivering access to a one-pot Wittig reaction using stabilized phosphoranes and granting diverse alkene products. Using a recombinant choline oxidase mutant, we first undertake biocatalytic alcohol oxidation across a range of functional aliphatic primary alcohols, demonstrating a remarkable substrate tolerance for this enzyme, including chloride, bromide, azide, S-methyl, and alkynyl groups. Following this, we extend capability and deliver a practicable milligram-scale one-pot Wittig reaction in water.

Levonorgestrel protected Au10 cluster for hypochlorite sensing in living organisms

BackgroundHighly reactive oxygen species (ROS) could lead to serious damage in living cells and are associated with many diseases like cancers. Metal cluster with strong fluorescence has great potential in biosensing and many thiolate ligands-protected clusters have been applied in ROS sensing. ResultsIn this work, we synthesized levonorgestrel protected Au10 cluster with specific sensing ability for highly ROS via crystal transformation from Au8 cluster, demonstrating the significance of inner core structure on detecting performance. The detection limit of Au10 cluster for ClO− could reach as low as 0.1 μM. This fluorescent probe not only achieving detection of exogenous ClO− in living cells and zebrafish, but also successful imaging of endogenous ClO− in HeLa and HepG2 cells. SignificanceIn comparison to previously reported cluster-based sensors for ROS, this work proposes a different reaction mechanism of metal nanoclusters for ROS detection (breakage of gold-alkynyl bond and oxidation of alkynyl group). This provides new directions for designing specific ROS probes and broadens the applications of metal clusters in disease diagnostics.

Monolithic conjugated microporous polymers with antibacterial activity for air filtration

The air pollution caused by particulate matters (PMs) poses a severe threat to the human health. In particular, the fine particles with diameter smaller than 2.5 μm (PM2.5) can be carriers of various bacteria and viruses, accelerating spread of epidemic. In this work, we synthesized two robust and flexible conjugated microporous polymer (CMP) aerogels for PMs removal, via one-step coupling polymerization of arylethynylenes and aryl halides with different molecular configuration. The resulting CMP aerogels comprise of hollow nanotubes with 3D porous network and high surface areas up to 660 m2/g. The efficiency of CMP aerogels for PM2.5 and PM10 was 99.5 ± 0.3 % and 99.8 ± 0.1 % with a long-term durability. In combination with their physicochemical stability and inherent surface hydrophobicity, a high efficiency for PM2.5 filtration more than 99.6 ± 0.1 % also can be obtained at a high humidity at room temperature both for the two CMP aerogels. In addition, benefiting from the rich alkynyl groups in skeletons, post-modification of the resulting CMP aerogels with thiol-yne chemistry followed by silver ion uptake gives rise to antibacterial materials with outstanding activity for gram-positive strains far superior to other porous organic polymer materials. This work provides a new avenue to fabricate bifunctional CMPs derived porous aerogels for air filtration with high performance and antibacterial activity, and is expected to expand the application of CMPs in environmental purification.

Manganese‐Catalyzed Chemoselective Direct Hydrogenation of α,β‐Epoxy Ketones and α‐Ketoamides at Room Temperature

AbstractChemoselective hydrogenation of α,β‐epoxy ketones and α‐ketoamides is achieved at room temperature (25 °C) using 2.0 bar H2 and a pincer‐ligated Mn(I) catalyst that provides synthetically valuable α‐hydroxy epoxides and α‐hydroxy amides. This protocol applies to a wide range of alkyl‐ and aryl‐substituted α,β‐epoxy ketones, including terpenes (α‐ionone, nootkatone, and R‐carvone)‐ and steroids (testosterone and progesterone)‐derived epoxy ketones, and tolerates H2 sensitive functionalities, such as halides, acetyl, nitrile, nitro, epoxide, alkenyl and alkynyl groups. Additionally, α‐ketoamides bearing reducible functional groups, including acetyl and diazo benzene, were untouched under this protocol and selectively converted to α‐hydroxy amides. A preliminary mechanistic study highlighted the metal‐ligand cooperative H2 activation process.

Ambient hydrogenation of solid aromatics enabled by a high entropy alloy nanocatalyst

Hydrogenation is a versatile chemical process with significant applications in various industries, including food production, petrochemical refining, pharmaceuticals, and hydrogen carriers/safety. Traditional hydrogenation of aromatics, hindered by the stable π-conjugated phenyl ring structures, typically requires high temperatures and pressures, making ambient hydrogenation a grand challenge. Herein, we introduce a PdPtRuCuNi high entropy alloy (HEA) nanocatalyst, achieving an exceptional 100% hydrogenation of carbon-carbon unsaturated bonds, including alkynyl and phenyl groups, in solid 1,4-bis(phenylethynyl)benzene (DEB) at 25 °C under ≤1 bar H2 and solventless condition. This results in a threefold higher hydrogen uptake for DEB-contained composites compared to conventional Pd catalysts, which can only hydrogenate the alkynyl groups with a ~ 27% conversion of DEB. Our experimental results, complemented by theoretical calculations, reveal that PdPtRu alloy is highly active and crucial in enabling the hydrogenation of phenyl groups, while all five elements work synergistically to regulate the reaction rate. Remarkably, this newly developed catalyst also achieves nearly 100% reactivity for ambient hydrogenation of a broad range of aromatics, suggesting its universal effectiveness. Our research uncovers a novel material platform and catalyst design principle for efficient and general hydrogenation. The multi-element synergy in HEA also promises unique catalytic behaviors beyond hydrogenation applications.

C(sp)-H, S-H, and Sn-H Bond Activation with a Cobalt(I) Pincer Complex.

This study focuses on the stoichiometric reactions of {2,6-(iPr2PO)2C6H3}Co(PMe3)2 with terminal alkynes, thiols, and tin hydrides as part of an effort to develop catalytic, two-electron processes with cobalt. This specific Co(I) pincer complex proves to be effective for cleaving the C(sp)-H, S-H, and Sn-H bonds to give oxidative addition products with the general formula {2,6-(iPr2PO)2C6H3}CoHX(PMe3) (X = alkynyl, thiolate, and stannyl groups) along with the free PMe3. These reactions typically reach completion when the substituents on acetylene, sulfur, and tin are electron-withdrawing groups (e.g., phenyl, pyridyl, and alkenyl groups). In contrast, alkyl-substituted acetylenes, 1-pentanethiol, and tributyltin hydride are partially converted due to the equilibria with the corresponding oxidative addition products. The Co(I) pincer complex is not a hydrothiolation catalyst but capable of catalyzing the hydrostannation of terminal alkynes with Ph3SnH to produce β-(Z)-alkenylstannanes selectively.

Photochemical transformation of liquid crystal monomers in simulated environmental media: Kinetics, mechanism, toxicity variation and QSAR modeling

Liquid crystal monomers (LCMs) are a new class of emerging pollutants with high octanol-water partition coefficients; however, their transformation behavior and associated risk to environments with high organic matter content has rarely been reported. In this study, we investigated the photodegradation kinetics, mechanism, and toxicity variation of 23 LCMs on leaf wax models (e.g., organic solvents methanol and n-hexane). The order of the photolysis rates of these LCMs were biphenylethyne LCMs > phenylbenzoate LCMs > diphenyl/terphenyl LCMs under simulated sunlight, while the phenylcyclohexane LCMs were resistant to photodegradation. The phenylbenzoate and biphenylethyne LCMs mainly undergo direct photolysis, while the diphenyl/terphenyl LCMs mainly undergo self-sensitized photolysis. The main photolysis pathways are the cleavage of ester bonds for phenylbenzoate LCMs, the addition, oxidation and cleavage of alkynyl groups for biphenylethyne LCMs, and the cleavage/oxidation of chains attached to phenyls and the benzene ring opening for diphenyl/terphenyls LCMs. Most photolysis products remained toxic to aquatic organisms to some degree. Additionally, two quantitative structure-activity relationship models for predicting kobs of LCMs in methanol and n-hexane were developed, and employed to predict kobs of 93 LCMs to fill the kobs data gap in systems mimicking leaf surfaces. These results can be helpful for evaluating the fate and risk of LCMs in environments with high content of organic phase.

Dual-mode SERS-ECL biosensor for robust detection of circulating miRNAs based on in-situ synthesized probes

A novel dual-mode biosensor integrating surface-enhanced Raman spectroscopy (SERS) and electrochemiluminescence (ECL) was developed for the reliable detection of acute myocardial infarction (AMI) related circulating miRNAs. The DNA walker nucleic acid amplification technique was employed for signal amplification and facilitated in-situ synthesis of ECL luminescent clusters and SERS probes. The alkynyl-modified silver nanocluster (AgNC) template strand and the azido-modified DNA probe on the electrode were connected through linker release facilitated by the continuous rolling and cutting action of the DNA walker on the spherical substrate. Under Cu+ catalysis, the alkynyl and azide groups at the junction undergo conversion into triazole molecules, which can serve as SERS probes. Subsequently, AgNCs were synthesized using a template method, with SERS signals emitted due to plasma resonance effects of triazole molecules situated between Au nanoparticles and AgNCs. The developed dual-mode analysis platform efficiently minimizes the potential for signal leakage, significantly corrects systematic errors, improves detection accuracy and sensitivity, and facilitates dependable identification of circulating miRNA. The detection of miRNA-133a exhibited a linear relationship within the concentration range of 100 aM to 1 nM, with detection limits of 32 aM and 0.17 fM in ECL and SERS modes, respectively. The SERS-ECL dual-mode detection platform may provide forward-looking ideas for the field of biosensing and clinical analysis.