Formation Of Aggregates Research Articles

High-throughput proliferation and activation of NK-92MI cell spheroids via a homemade one-step closed bioreactor in pseudostatic cultures for immunocellular therapy

AbstractThe NK-92MI cell line has displayed significant promise in clinical trials for cancer treatment. However, challenges persist in obtaining sufficient cell quantities and achieving optimal cytotoxicity. The proliferation of natural killer (NK) cells involves the formation of cell aggregates, but excessively large aggregates can impede nutrient and waste transport, leading to reduced cell survival rates. In this study, a custom bioreactor was designed to mimic pseudostatic culture conditions by integrating brief mechanical rotation during a 6-h static culture period. This method aimed to achieve an optimal aggregate size while improving cell viability. The findings revealed a 144-fold expansion of 3D NK-92MI cell aggregates, reaching an ideal size of 80–150 µm, significantly increasing both cell proliferation and survival rates. After 14 days of culture, the NK-92MI cells maintained their phenotype during the subsequent phase of cell activation. Moreover, these cells presented elevated levels of IFN-γ expression after IL-18 activation, resulting in enhanced NK cell-mediated cytotoxicity against K562 cells. This innovative strategy, which uses a closed suspension-based culture system, presents a promising approach for improving cell expansion and activation techniques in immunocellular therapy.

α-Synuclein ubiquitination – functions in proteostasis and development of Lewy bodies

Synucleinopathies are neurodegenerative disorders characterized by the accumulation of α-synuclein containing Lewy bodies. Ubiquitination, a key post-translational modification, has been recognized as a pivotal regulator of α-synuclein’s cellular dynamics, influencing its degradation, aggregation, and associated neurotoxicity. This review examines comprehensively the current understanding of α-synuclein ubiquitination and its role in the pathogenesis of synucleinopathies, particularly in the context of Parkinson’s disease. We explore the molecular mechanisms responsible for α-synuclein ubiquitination, with a focus on the roles of E3 ligases and deubiquitinases implicated in the degradation process which occurs primarily through the endosomal lysosomal pathway. The review further discusses how the dysregulation of these mechanisms contributes to α-synuclein aggregation and LB formation and offers suggestions for future investigations into the role of α-synuclein ubiquitination. Understanding these processes may shed light on potential therapeutic avenues that can modulate α-synuclein ubiquitination to alleviate its pathological impact in synucleinopathies.

The Features of Beta-Amyloid Phosphorylation in Alzheimer’s Disease

Accumulation of neurotoxic aggregates of beta-amyloid peptides (Aβ) is a hallmark of Alzheimer’s disease (AD) progression. Post-translational modifications (PTMs) increase Aβ aggregation and cytotoxicity, and the content of specific Aβ proteoforms is elevated in senile plaques of AD patients. The pathophysiological mechanisms of aggregate formation and the role of Aβ proteoforms need thorough study both to understand the role played by specific processes in the initiation of neuronal degradation and to find effective preventive means of therapeutic action. The present work investigates the dynamics of accumulation of phosphorylated serine-8 proteoform Aβ (pSer8-Aβ) using the 5xFAD mouse amyloid model. Aβ samples from human cerebrospinal fluid (CSF) and brain were also investigated. Western blot studies using 1E4E11 and 4G8 antibodies showed that accumulation of pSer8-Aβ in mouse brain starts as early as at the age of 3 months and reaches a maximum by the age of 14–17 months, which is generally similar to the dynamics of accumulation of the total pool of Aβ peptides. The pSer8-Aβ level in human CSF in AD patients can reach ~ 1–10% of the total amount of Aβ. Mass spectrometric analysis showed that Aβ phosphorylation by the Ser8, Tyr10, and Ser26 residues in brain tissues, as well as phosphorylation of the APP by Thr719 residue, is possible. These findings support the assumption that pSer8-Aβ proteoforms are involved in amyloidosis in AD.

Mixed Adsorption Mono- and Multilayers of ß-Lactoglobulin Fibrils and Sodium Polystyrene Sulfonate

The formation of beta-lactoglobulin (BLG)/sodium polystyrene sulfonate (PSS) complexes decelerates the change in the surface properties of the mixed solutions with the surface age and increases the steady-state dilational surface elasticity in a narrow PSS concentration range. At the same time, the changes in the surface properties are accelerated in the dispersions of BLG fibrils with and without PSS due to the influence of small peptides coexisting with fibrils. A decrease in the peptide concentration as a result of the dispersion purification leads to slower changes in the surface properties at low PSS concentrations. The increase in the polyelectrolyte concentration results in an increase in the steady-state surface elasticity due to the fibril/PSS complex formation and in very slow changes in the surface properties if the polyelectrolyte exceeds a certain critical value. The latter effect is a consequence of the formation of large aggregates and of an increase in the electrostatic adsorption barrier. The consecutive adsorption of BLG fibrils and PSS leads to the formation of regular multilayers at the liquid–gas interface. The multilayer properties change noticeably with an increase in the number of layers from four to six in agreement with previous results on the multilayers of PSS with an oppositely charged synthetic polyelectrolyte, presumably due to the heterogeneity of the first PSS layer. The dynamic elasticity of the multilayers approaches 250 mN/m, indicating that they can effectively stabilize foams and emulsions.

TMIC-39. SPATIAL MULTIOMICS PROFILING REVEALS HETEROGENEITY OF B:T CELL INTERACTIONS AND PLASMA CELL FORMATION IN TERTIARY LYMPHOID STRUCTURES IN HUMAN GLIOMAS

Abstract Adult-type diffuse gliomas, the most common primary brain tumours, remain a clinical challenge in oncology with limited treatment options, restricted anti-tumour immune response and a dismal patient prognosis. Despite their immunosuppressive microenvironment, the formation of lymphoid aggregates containing adaptive immune cells has been reported in gliomas. However, the cellular compositions, immunological function, and relevance of lymphoid aggregates for adaptive anti-tumour immunity is not well understood. Therefore, we performed a comprehensive, unbiased analysis of lymphoid aggregation in 642 adult-type diffuse gliomas using a multi-modal approach, combining DNA methylation and RNA sequencing with spatial transcriptome and proteome profiling. Overall, B cell aggregates and tertiary lymphoid structures (TLS) were observed in 15% of tumours, with the highest prevalence in primary glioma localised to the temporoparietal lobe. The presence of TLS was associated with an improved overall survival. Gliomas containing TLS displayed a remodelled perivascular space, characterised by transcriptional upregulation and spatial redistribution of collagens associated with barrier functions. Spatial transcriptome and proteome profiling revealed heterogenous B:T cell interactions that were associated with elevated CD8 T-cell numbers and differences in IgA and IgG plasma cell forming capacity, suggestive of dynamic adaptive immune response.

Enhanced Adsorption and Photocatalytic Activity of Vertically Oriented TiO2 Nanotube Arrays by Li Incorporation

A highly efficient, solid, and easily maneuverable adsorbent and photocatalyst, Li‐incorporated titanate nanotubes that manifest adsorption efficiency of 98.1% and photocatalytic efficiency of 99.6% in 60 min and 97.8% and 98.5%, respectively, in a shorter duration of 20 min, is synthesized by a facile two‐stage electrochemical technique. The modified nanotubes exhibit good cyclic stability of 93.7% photodegradation of malachite green dye after three continuous cycles. The adsorption data show the highest correlation for second‐order pseudo kinetics and Freundlich isotherm, suggesting multilayer chemisorption with an adsorption capacity of kF ≈ 219.51 mg1–1/nL1/ng−1. Fourier transform infrared spectroscopy (FTIR) analysis of the adsorbent before and after the adsorption corroborates the findings. X‐Ray photoelectron spectroscopy reveals the formation of a larger number of oxygen vacancies (Ti3+/Ti2+) that facilitate more carrier release for the production of reactive oxygen species during photocatalysis. X‐Ray diffraction and transmission electron microscopy analysis confirm a secondary rutile phase formation on Li doping that promotes heterogeneous multilayer adsorption. Field‐emission spectroscopic studies reveal a change in the morphology of the doped tubes with porous aggregate formation on the surface. The structural, morphological, and compositional change brought about by Li incorporation facilitates the use of titania nanotubes as an efficient adsorbent cum photocatalyst in the removal of malachite green dye.

Monovalent Ion Effect on Liquid-Liquid Phase Separation of Aqueous Polyphosphate-Salt Mixtures.

Polyphosphate (polyP) is one of the most conserved biomacromolecules and can form aggregates, such as polyP granules in bacteria, which are generated through liquid-liquid phase separation (LLPS). Studies have examined the mechanism of polyP aggregation using LLPS systems containing artificial polyP molecules as aggregation system models, where LLPS is typically induced by multivalent salts and polyelectrolytes. Although the typical concentrations of monovalent ions in living cells are approximately 100 times higher than those of divalent ions, the effects of monovalent ions on the LLPS of polyP solutions are little known. This study demonstrated that submolar NaCl induces LLPS of polyP solutions, whereas other monovalent salts did not induce LLPS at the same concentrations. Small-angle X-ray scattering measurements revealed that NaCl significantly stabilizes the intermolecular association of polyP, inducing LLPS. These findings suggest that the modulation of monovalent ion concentrations is an underlying mechanism of polyP aggregate formation and deformation within living cells.

A Gain-of-Function Mutation in the Ca2+ Channel ORAI1 Causes Stormorken Syndrome with Tubular Aggregates in Mice

Store-operated Ca2+ entry (SOCE) controls Ca2+ homeostasis and mediates multiple Ca2+-dependent signaling pathways and cellular processes. It relies on the concerted activity of the reticular Ca2+ sensor STIM1 and the plasma membrane Ca2+ channel ORAI1. STIM1 and ORAI1 gain-of-function (GoF) mutations induce SOCE overactivity and excessive Ca2+ influx, leading to tubular aggregate myopathy (TAM) and Stormorken syndrome (STRMK), two overlapping disorders characterized by muscle weakness and a variable occurrence of multi-systemic anomalies affecting spleen, skin, and platelets. To date, different STIM1 mouse models exist, but only a single ORAI1 mouse model with muscle-specific TAM/STRMK phenotype has been described, precluding a comparative analysis of the physiopathology in all affected tissues. Here, we generated and characterized mice harboring a prevalent ORAI1 TAM/STRMK mutation and we provide phenotypic, physiological, biochemical, and functional data. Examination of Orai1V109M/+ mice revealed smaller size, spleen enlargement, reduced muscle force, and decreased platelet numbers. Morphological analyses of muscle sections evidenced the presence of tubular aggregates, the histopathological hallmark on biopsies from TAM/STRMK patients absent in all reported STIM1 models. Overall, Orai1V109M/+ mice reliably recapitulate the human disorder and highlight the primary physiological defects caused by ORAI1 gain-of-function mutations. They also provide the possibility to investigate the formation of tubular aggregates and to develop a common therapy for different TAM/STRMK forms.

Ether-Modified Nonflammable Phosphate Enabling Anion-Rich Electrolyte for High-Voltage Lithium Metal Batteries.

Phosphate-based localized high-concentration electrolytes (LHCE) feature high flame retardant and satisfactory cathodic stability for lithium metal batteries. However, stable cycling of those electrolytes at ultra-high upper cut-off voltages for long-term stability remains challenging. Herein, an ether-modified phosphate, diethyl (2-methoxy ethoxy) methylphosphonate (DMEP), is designed for high-voltage applications. The ether modification enhances the stability of the Li+-DMEP-FSI- coordination structure, promoting the formation of cation-anion aggregates (AGG) dominated solvation structure, which favors the generation of LiF-rich cathode electrolyte interphase layers compared to triethyl phosphate (TEP)-based LHCE. Consequently, cathode degradation, including transition-metal dissolution and electrode cracking, is well-suppressed. The LiNi0.8Co0.1Mn0.1O2 (NCM811)||Li full cells using DMEP-based LHCEs show more than 90.7% capacity retention at an ultrahigh upper cut-off voltage of 4.7 V after 100 cycles. Notably, DMEP-LHCE exhibits enhanced safety than that of TEP-LHCE, suggesting its versatility and potential for next-generation lithium metal batteries.

Physicochemical Properties and Metal Ion-Binding Capacity of Thermal-Induced Antarctic Krill Protein Aggregates under Different pH Conditions.

Protein properties can be modified by thermal treatment at different pH values, resulting in the formation of protein aggregates with diverse morphologies and functionalities. This study investigated the morphology of aggregates of Antarctic krill protein (AKPS) formed by thermal treatment (90 °C, 15 min) at pH 2, 3, 4, and 6-12, characterized the different morphologies of AKPS, and determined the metal ion (Ca2+, Fe2+, and Zn2+)-binding capacities. Results showed that heat treatment with different pH values generated various AKPS with distinct morphology and metal ion-binding abilities. AKPS have formed fibrils at pH ≤ 3, particles at pH 4-7, and amorphous aggregates at pH ≥ 8. Fibrous AKPS (pH 2) exhibited a high solubility (80.36%) and strong reducing effect on iron. The binding capacities of Ca2+ and Fe2+ reached 36.08% and 66.75%. Particulate AKPS (pH 6 and 7) primarily only showed Zn2+-binding capacity similar to that of casein phosphopeptide (17.33%). Amorphous AKPS (pH 9-11) displayed the optimal capacity to bind Zn2+ and Fe2+ (26.90% and 74.94%). The alterations in morphology and functional characteristics of AKPS permit the design of various nanostructures for food-derived mineral supplements, thus developing their potential for application in functional foods.

Insights into molecular mechanisms of phytochemicals in quorum sensing modulation for bacterial biofilm control.

Biofilm formation is a common mechanism by which bacteria undergo phenotypic changes to adapt to environmental stressors. The formation of biofilms has a detrimental impact in clinical settings by contributing to chronic infections and promoting antibiotic resistance. Delving into the molecular mechanisms, the quorum sensing (QS) system involves the release of chemical signals for bacterial cell-to-cell communication, which activates and regulates the expression of various genes and virulence factors, including those related to biofilm formation. Accordingly, the QS system becomes a potential target for combating biofilm-associated concerns. Natural products derived from plants have a long history of treating infectious diseases in humans due to their antimicrobial properties, making them valuable resources for screening anti-biofilm agents. This review aims to discover the mechanisms by which phytochemical agents inhibit QS, potentially offering promising new therapies for treating biofilm-associated infections. By targeting the QS system, these phytochemical agents can prevent bacterial aggregation and biofilm formation while also diminishing other bacterial virulence factors. Additionally, it is important to focus on the advancement of techniques and experiments to investigate their molecular mechanisms. A thorough understanding of these mechanisms may encourage further studies to evaluate the safety and efficacy of phytochemical agents used alone or in combination with other strategies.

Nuclear poly-glutamine aggregates rupture the nuclear envelope and hinder its repair.

Huntington's disease (HD) is caused by a polyglutamine expansion of the huntingtin protein, resulting in the formation of polyglutamine aggregates. The mechanisms of toxicity that result in the complex HD pathology remain only partially understood. Here, we show that nuclear polyglutamine aggregates induce nuclear envelope (NE) blebbing and ruptures that are often repaired incompletely. These ruptures coincide with disruptions of the nuclear lamina and lead to lamina scar formation. Expansion microscopy enabled resolving the ultrastructure of nuclear aggregates and revealed polyglutamine fibrils sticking into the cytosol at rupture sites, suggesting a mechanism for incomplete repair. Furthermore, we found that NE repair factors often accumulated near nuclear aggregates, consistent with stalled repair. These findings implicate nuclear polyQ aggregate-induced loss of NE integrity as a potential contributing factor to Huntington's disease and other polyglutamine diseases.

Degradation Analysis of Exciplex-Based Organic Light-Emitting Devices Using Carbazole-Based Materials.

A spectral shift and new emission bands in the green and red regions have been observed in deep blue exciplex-based organic light-emitting diodes (OLEDs) using carbazole-based materials, namely, tris(4-carbazoyl-9-ylphenyl)amine (TCTA). To deeply understand the origin of these new bands, single-layer and bilayer TCTA-based OLEDs subjected to electrical and optical (ultraviolet (UV)) stresses were investigated by using various optical, electrical, morphological, and chemical measurements. The results showed that the stress-induced emission bands primarily originate from morphological changes rather than chemical changes. The accumulation of excitons in the TCTA layer induces molecular aggregation, leading to the formation of electrically active electronic states, namely, electroplexes and electromers, which lead to the appearance of additional emission bands in green and red regions. Impedance spectroscopy measurements on single-layer OLEDs complemented this study. The results showed that TCTA degradation affects charge injection and transport. It was concluded that the stress-induced emission bands are caused by aggregate domain formation and are closely linked to the formation of electrically active defects, which act as trap states for charge carriers in the TCTA band gap.

RNA G-quadruplexes and calcium ions synergistically induce Tau phase transition in vitro

Tau aggregation is a defining feature of neurodegenerative tauopathies, including Alzheimer’s disease, corticobasal degeneration, and frontotemporal dementia. This aggregation involves the liquid–liquid phase separation (LLPS) of Tau, followed by its sol–gel phase transition, representing a crucial step in aggregate formation both in vitro and in vivo. However, the precise cofactors influencing Tau phase transition and aggregation under physiological conditions (e.g., ion concentration and temperature) remain unclear. In this study, we unveil that nucleic acid secondary structures, specifically RNA G-quadruplexes (rG4s), and calcium ions (Ca2+) synergistically facilitated the sol–gel phase transition of human Tau under mimic intracellular ion conditions (140 mM KCl, 15 mM NaCl, and 10 mM MgCl2) at 37°C in vitro. In the presence of molecular crowding reagents, Tau formed stable liquid droplets through LLPS, maintaining fluidity for 24 h under physiological conditions. Notably, cell-derived RNA promoted Tau sol–gel phase transition, with rG4s emerging as a crucial factor. Surprisingly, polyanion heparin did not elicit a similar response, indicating a distinct mechanism not rooted in electrostatic interactions. Further exploration underscored the significance of Ca2+, which accumulate intracellularly during neurodegeneration, as additional cofactors in promoting Tau phase transition after 24 h. Importantly, our findings demonstrate that rG4s and Ca2+ synergistically enhance Tau phase transition within 1 h when introduced to Tau droplets. Moreover, rG4-Tau aggregates showed seeding ability in cells. In conclusion, our study illuminates the pivotal roles of rG4s and Ca2+ in promoting Tau aggregation under physiological conditions in vitro, offering insights into potential triggers for tauopathy.

Long-term rice cultivation enhances root development and yields by improving the structural properties of soil aggregates in saline–alkaline environments

Rice cultivation has the ability to improve saline soils. However, the effects of long-term rice cultivation on saline soil chemistry, salt ions, root characteristics, and aggregate formation remain unclear. In this study, the impact of different planting durations (1, 3, 5, 8, and 10 years) on the spatial and temporal transport of soil salts, soil chemical properties, distribution and stability of aggregates, root characteristics, and yields, were assessed. Long-term rice cultivation reduced soil pH, exchangeable sodium percentage (ESP), and EC in the 0-60cm soil layer compared to 1Y (5.45%, 61.57%, and 81.87% reduction in topsoil (0-20cm) and 8.54%, 72.82%, and 71.94 in subsoil (20-60cm), respectively). However, the soil organic matter (OM), alkaline nitrogen (AN), phosphorus (AP), and potassium (AK) increased (217.09%, 90.18%, 89.23%, and 179.18% increase in topsoil and 223.72%, 81.24%, 174.28%, and 172.57% increase in subsoil, respectively). Additionally, the Cl-, K+, and Na+ in the soil gradually leached downward with the increase in the duration of rice cultivation (55.87%、36.08%、59.80%). Simultaneously, the increased duration markedly elevated the soil macroaggregate content (11.43%-20.04% by dry-sieving and 53.48%-288.09% by wet-sieving), clayey grain content (59.17%-198.33%), and soil aggregate stability, especially for 8Y and 10Y. The improved soil structure and root characteristic under long-term rice cultivation conditions increased the yield (28.89-54.81%). Partial least squares path model displayed that rice cultivation affected the aggregate stability, root characteristics, and rice yield via the corresponding chemical properties (pH, EC, and ESP), nutrient contents (AN, AP, AK, and SOM), and salt ion contents (Cl-, K+, and Na+). These findings are critical to understanding aggregate formation in saline soils.

Aggregation Dynamics of a 150 kDa Aβ42 Oligomer: Insights from Cryo Electron Microscopy and Multimodal Analysis

Protein misfolding is a widespread phenomenon that can result in the formation of protein aggregates, which are markers of various disease states, including Alzheimer's disease (AD). In AD, amyloid beta (Aβ) peptides are key players in the disease's progression, particularly the 40- and 42 residue variants, Aβ40 and Aβ42. These peptides aggregate to form amyloid plaques and contribute to neuronal toxicity. Recent research has shifted attention from solely Aβ fibrils to also include Aβ protofibrils and oligomers as potentially critical pathogenic agents. Particularly, oligomers demonstrate more significant toxicity compared to other Aβ specie. Hence, there is an increased interest in studying the correlation between toxicity and their structure and aggregation pathway. The present study investigates the aggregation of a 150kDa Aβ42 oligomer that does not lead to fibril formation. Using negative stain transmission electron microscopy (TEM), size exclusion chromatography (SEC), dynamic light scattering (DLS), and cryo-electron microscopy (cryo-EM), we demonstrate that 150kDa Aβ42 oligomers form higher-order string-like assemblies over time. These strings are unique from the classical Aβ fibrils. The significance of our work lies in elucidating molecular behavior of a novel non-fibrillar form of Aβ42 aggregate.

Controlling the co-aggregation and gelation of cod-soy binary proteins based on partially/fully denatured soy proteins

Structured binary protein networks offer a pathway for designing gel-based foods with less ecological and economic effects. This study investigated the heat-mediated interaction and gelation kinetics of cod-soy mixed proteins at molecular level. Results indicated that denaturation degree of soy proteins was fundamental in determining the protein-protein interactions during heating. Considerable non-natural β-sheet was generated in the heterogeneous structures to initiate their aggregation behavior. Cod actomyosin comprising myosin heavy chains and actin mainly regulated their aggregation below 70 °C. At higher temperatures, the formation of large-sized and intermediary-sized aggregates was dominated by disulfide bond exchange between cod actomyosin and soy A-B aggregates (≤ 85 °C) or dissociated B subunits (> 85 °C). These aggregates were further evidenced as essential components to form gel networks with higher storage modulus (G'). These findings provide fundamental insights for designing gel-based products with desirable nutritional and textural properties based on plant-animal binary proteins.

Characterization and kinetics of whey protein isolate amyloid fibril aggregates under moderate electric fields

Food proteins solutions enable the controlled flow of electrical current when subjected to a Moderate electric field (MEF). This application results in internal heat generation, known as ohmic heating, accompanied by electrochemical reactions. These effects play a significant role in influencing the formation of protein amyloid fibril aggregates (AFA), which have broad applications in food and biomedical fields, ranging from improving food texture to biomedical applications such as drug delivery and disease treatment. This study focused on investigating the formation of β-Lactoglobulin (β-lg) AFA under MEF conditions using WPI as protein source and various characterization techniques (e.g., Thioflavin T fluorescence, circular dichroism, and electron microscopy). The results indicated that MEF prolonged the lag phase of AFA formation. Furthermore, nucleation and fibril growth showed higher activation coefficients and cooperativity level (n > 2) compared to conventional heating method. MEF treatment resulted in unique fibril clustering and the presence of unexpected higher-order AFA networks confirmed by electron microscopy. These findings highlight the significant role of MEF in influencing the aggregation kinetics of β-lg AFA. Exploring further into the electrochemical and thermal effects during protein aggregation processes holds the key to unlocking deeper insights fibril formation process.

Modeling of TDP-43 proteinopathy by chronic oxidative stress identifies rapamycin as beneficial in ALS patient-derived 2D and 3D iPSC models

Amyotrophic Lateral Sclerosis (ALS) is a fatal neurodegenerative disorder characterized neuropathologically by TDP-43 proteinopathy with loss of TDP-43 nuclear splicing activity and formation of cytoplasmic TDP-43 aggregates. The lack of suitable experimental models of TDP-43 proteinopathy has hampered the discovery of effective therapies. We already showed that chronic and mild oxidative insult by sodium arsenite (ARS) triggered TDP-43 cytoplasmic aggregation and stress granules (SGs) formation in ALS patient-derived fibroblasts and motor neurons differentiated from induced pluripotent stem cells (iPSC-MNs). However, whether this insult induces a reduction of TDP-43 splicing activity in the nucleus, thus recapitulating both gain and loss of function pathomechanisms, still remains to be determined.In this study we first showed that chronic ARS in human neuroblastoma cells triggered TDP-43 cytoplasmic mislocalization, SGs formation and defective splicing of TDP-43 target genes UNC13A and POLDIP3 as functional readouts of TDP-43 proteinopathy. Additionally, a dysregulation of autophagy and senescence markers was observed in this condition. In a preliminary drug screening approach with autophagy-promoting drugs, namely rapamycin, lithium carbonate and metformin, only rapamycin prevented ARS-induced loss of TDP-43 splicing activity. We then demonstrated that, in addition to TDP-43 cytoplasmic aggregation, chronic ARS triggered TDP-43 loss of splicing activity also in ALS patient-derived primary fibroblasts and iPSC-MNs and that rapamycin was beneficial to reduce these TDP-43 pathological features. By switching to a neuro-glial 3D in vitro model, we observed that treatment of ALS iPSC-brain organoids with chronic ARS also induced a defective TDP-43 splicing activity which was prevented by rapamycin.Collectively, we established different human cell models of TDP-43 proteinopathy which recapitulate TDP-43 gain and loss of function, prevented by rapamycin administration. Human neuroblastoma cells and patient-derived fibroblasts and 2D- and 3D-iPSC models exposed to chronic oxidative stress represent therefore suitable in vitro platforms for future drug screening approaches in ALS.

Evidence of conformational changes and self-aggregation of 1,2-Bis(4-pyridyl)ethylene in solutions with ethanol

In this work, we report on a concentration and temperature dependent study of the 1,2-Bis(4-pyridyl)ethylene (BPE) – ethanol solutions by means of ultrasonic relaxation spectroscopy. The results revealed two distinct relaxation processes that follow Debye-type frequency dependence. Despite the presence of both processes in the full concentration range studied, the low-frequency relaxation process, related to conformational change between the trans- and gauche-BPE conformers, dominates the acoustic spectra in the low-concentration range, while diminishes at higher concentrations with a parallel enhancement of the high-frequency relaxation process, which is attributed to the self-association of BPE molecules. Quantum mechanical calculations were performed to investigate the energetics of the trans- and gauche-conformers. The trans-species was found more thermodynamically stable than the gauche-conformer. By applying the Synchronous Transit-Guided Quasi-Newton (STQN) methodology, we confirmed the presence of a single transition structure. From the temperature dependence of the acoustic properties, we estimated the activation enthalpy and the enthalpy difference between the two conformers. Density Functional Theory (DFT) calculations have been applied to attain the corresponding enthalpies that were found close to the experimental values. Molecular docking calculations established the self-aggregation mechanism between BPE monomers forming three types of dimeric units, namely the trans-trans, the gauche-gauche and the trans-gauche dimer species with the latter found to be the most thermodynamically favorable. The concentration dependence of the sound velocity, mass density and shear viscosity evidenced the formation of BPE aggregates. From the temperature dependence of the acoustic spectra, the thermodynamic properties of the self-aggregation mechanism of BPE were also determined. Based on the vibrational spectroscopic data, the population of the gauche conformers was found to increase with concentration at the expense of the population of the trans conformers. From the study of the vibrational properties of the system in the short-rage order, we cannot exclude the presence of a specific dimer type in the overall structure. Nevertheless, regarding to the binding score of the trans-gauche dimer (-1.25 kcal/mol), this species is the most thermodynamically stable and most likely its population is higher in dense solutions relative to the other two dimer species.