Affect Arbuscular Mycorrhizal Fungi Research Articles

Four-year biochar study: Positive response of acidic soil microenvironment and citrus growth to biochar under potassium deficiency conditions

Biochar has direct or indirect effects on soil microorganisms, but the changes in soil metabolism are rarely monitored and analyzed. In addition, the potassium (K) effect of biochar has not attracted much attention. This study set up a four-year experiment with acid soil and citrus as the test soil and plants, respectively. The long-term effects of biochar on the acid soil microenvironment and citrus growth were explored from soil properties (nutrient contents, microbial communities, and metabolites) and citrus growth (nutrient contents, reactive oxygen species (ROS), and root endophytes). The results showed that the four-year amendment of biochar in acid soil was very significant, in which the soil pH was increased by 1 unit, organic matter and cation exchange capacity (CEC) increased by 120.77% and 16.21%, respectively. Biochar improved the K availability of soil by increasing the number and metabolic activity of Azotobacter and Pseudomonas, and finally effectively alleviated the K deficiency of citrus. From the perspective of available K content, 2% biochar reduced the 20% conventional K application rate. The pH, organic matter, and cation exchange capacity (CEC) were the most important factors affecting the bacterial community structure, while the fungal community was more sensitive to the change in the nutrient environment. Biochar mainly stimulated the progress of soil metabolism by affecting the metabolic activity of bacterial communities. Biochar application increased some of the beneficial bacteria in the soil, i.e., the relative abundance of Pseudarthrobacter increased by 700 times. However, biochar and exogenous K did not significantly affect arbuscular mycorrhizal fungi (AMF) and endophytic bacteria in citrus roots. In general, biochar has a long-term and positive response to the acidic soil microenvironment and citrus growth, as well as promotion value in the agricultural field.

Responses of arbuscular mycorrhizal fungi to nitrogen addition: A meta-analysis.

Arbuscular mycorrhizal (AM) fungi play important roles in carbon (C), nitrogen (N) and phosphorus (P) cycling of terrestrial ecosystems. The impact of increasing N deposition on AM fungi will inevitably affect ecosystem processes. However, generalizable patterns of how N deposition affects AM fungi remains poorly understood. Here we conducted a global-scale meta-analysis from 94 publications and 101 sites to investigate the responses of AM fungi to N addition, including abundance in both intra-radical (host roots) and extra-radical portion (soil), richness and diversity. We also explored the mechanisms of N addition affecting AM fungi by the trait-based guilds method. Results showed that N addition significantly decreased AM fungal overall abundance (-8.0%). However, the response of abundance in intra-radical portion was not consistent with that in extra-radical portion: root colonization decreased (-11.6%) significantly, whereas extra-radical hyphae length density did not change significantly. Different AM fungal guilds showed different responses to N addition: both the abundance (spore density) and relative abundance of the rhizophilic guild decreased significantly under N addition (-29.8% and -12.0%, respectively), while the abundance and relative abundance of the edaphophilic guild had insignificant response to N addition. Such inconsistent responses of rhizophilic and edaphophilic guilds were mainly moderated by the change of soil pH and the response of root biomass, respectively. Moreover, N addition had an insignificant negative effect on AM fungal richness and diversity, which was strongly related with the relative availability of soil P (i.e. soil available N/P ratio). Collectively, this meta-analysis highlights that considering trait-based AM fungal guilds, soil P availability and host plant C allocation can greatly improve our understanding of the nuanced dynamics of AM fungal communities under increasing N deposition.

Is arbuscular mycorrhizal fungal species community affected by cotton growth management systems in the Brazilian Cerrado?

Conventional cotton production in western Bahia, Brazil, involves intensive use of agricultural inputs and mechanization, which may affect arbuscular mycorrhizal fungi (AMF). This work aimed at studying the impact of conventional and organic cotton production in the AMF of western Bahia. Soil samples were obtained from conventional white cotton and colored cotton organic production systems as well as from native Cerrado areas, close to the white cotton fields, and from the subcaducifolia vegetation, close to the organic colored cotton farms. The most frequent species in the conventional farming areas belonged to the genera Acaulospora (10 spp.); Glomus (8 spp.); Dentiscutata (3 spp.); Ambispora, Pacispora and Scutellospora (2 spp. each), as well as Claroideoglomus etunicatum, Diversispora sp., Entrophospora infrequens, Gigaspora sp., Orbispora pernambucana, Paradentiscutata maritima, and Paraglomus occultum. Eighteen species were found in the organic farming areas, with the predominance of Glomus (5 spp.) and Acaulospora (5 spp.), and with Claroideoglomus, Dentiscutata, Gigaspora, Corymbiglomus, Orbispora, Paraglomus, Scutellospora, and Simiglomus (1 spp. each). Paraglomus bolivianum was first reported in Cerrado. In the native vegetation, nine species were found, with the predominance of Glomus and Acaulospora. The highest number of AMF species was found in the organic farming areas, which deserves further investigation.

Colonization of Arbuscular Mycorrhizal Fungi (AMF) in Maize from Three Different Jhum Lands in Mizoram, India

The study was conducted to assess the association of Arbuscular Mycorrhizal Fungi (AMF) in maize from three different jhum fallows. The jhum fallows are of three different years i.e., 1-3 years, 4-6 years and 7-10 years. Root samples were taken from maize to study colonization of AMF and spores were recovered from the rhizosphere region of the roots. It was observed that soil properties, rainfall pattern as well as human exploitation affect AMF colonization of roots.

Influence of smallholder farm practices on the abundance of arbuscular mycorrhizal fungi in rural Zambia

While the effects of row crop agriculture on arbuscular mycorrhizal (AM) fungi have been studied in temperate climates, much less is known about the consequences of methods employed by smallholder farmers in Africa. We compared soils from 12 small farms in rural eastern Zambia with soil from nearby grasslands (control) to assess microbial abundances, including AM fungi, using phospholipid and neutral lipid fatty acid (PLFA/NLFA) analyses. We also measured soil pH, soil organic matter, and key nutrients, and categorized farms to link microbial abundances with agricultural practices including: low and high input cultivation, conservation farming, and agroforestry. Soil organic matter was significantly greater in grassland (control) soils, compared to any of the farms. Concentrations of N, P, and K were greater in farm soils compared to grassland soil. Extra-radical AM fungal biomass was significantly greater in grassland soils compared to farms, and grasslands contained more than double the total microbial biomass compared to any farm. Our results indicate agricultural practices in Zambia are negatively affecting AM fungi as well as other soil microbes. However, conservation farming shows promise in facilitating AM fungal recovery, with potential long-term benefits for soil stability via hyphal exudates and physical entanglement.

Arbuscular mycorrhizal fungal communities in tropical rain forest are resilient to slash-and-burn agriculture

Abstract:Certain forestry and agricultural practices are known to affect arbuscular mycorrhizal (AM) fungal communities, but the effects of deforestation – including slash-and-burn management and other more severe disturbances – in tropical rain forests are poorly understood. We addressed the effects of anthropogenic disturbance on rain-forest AM fungal communities in French Guiana, by comparing mature tropical rain forest, slash-and-burn (5 y old) and clearcut areas (8 y old). A total of 36 soil samples were collected in six plots and sequenced using a high throughput 454-pyrosequencing platform. A total of 32649 sequences from 103 AM fungal virtual taxa (VT) were recorded. Whereas alpha diversity of AM fungi did not decrease due to land-use intensification, with average richness ranging from 17 to 21 taxa per plot, beta diversity (average distance to multivariate centroid) dropped by 28% from 0.46 in rain forest to 0.33 under clearcutting. AM fungal community composition was correlated with land use and soil chemical properties. Clearcut areas were characterized by the more frequent occurrence of specialist AM fungi, compared with mature forest or slash-and-burn areas. Specifically, clearcuts contained the highest proportions of VT that were geographic (21%), habitat (31%), abundance (97%) or host (97%) specialists based on VT metadata contained in the MaarjAM database. This suggests that certain AM fungi with narrow ecological niches have traits that allow them to exploit conditions of severe disturbance. In conclusion, slash-and-burn management appears to allow diverse AM fungal communities to persist, and may favour regeneration of tropical rain forest after abandonment. More severe disturbance in the form of clearcutting resulted in marked changes in AM fungal communities.

Switching between monocot and dicot crops in rotation schemes of Argentinean productive fields results in an increment of arbuscular mycorrhizal fungi diversity

Despite the importance of mycorrhizal symbiosis, we understand little how different soil managements affect arbuscular mycorrhizal fungi (AMF) communities. Crop rotation is recommended in sustainable agriculture because of its benefits in soil fertility improvement and positive effect decreasing soil borne diseases incidence and pest abundance. Amplicon sequencing of LSU and SSU rRNA gene fragments was used to analyse AMF diversity in fields from one of the most productive regions in Argentina, which varied in the main class of the plant component included in the crop rotation scheme. The samples encompassed different agricultural settings; one involving only monocot plants in the crop rotation schemes, one including a dicot crop, and the other an alternation and/or a combination of monocot and dicot plant components. We found lower richness and diversity in soils under monocot succession than in a dicot/monocot rotation or consociation. We observed that agricultural management had an influence on beta diversity patterns. Principal coordinate analysis showed that communities from the dicot/monocot rotation or consociation samples clustered together and separated from the monocots samples. These findings suggested that the increment of soil AMF diversity is more dependent on the alternation between monocot and dicot crops than other factors related to the farming systems.

Arbuscular mycorrhizal fungi with different soil fertility amendment practices in agricultural landscapes of Kenyan highlands

Several interrelated and site-specific agronomic factors ranging from agroecological conditions to systems management practices have been shown to variably affect arbuscular mycorrhizal fungi (AMF) diversity in the soil. Also, there have been various attempts in the past to evaluate the potential of AMF field inoculation but a majority focussed on the use of exotic strains, disregarding the potential of the existing naturally occurring strains. In an attempt to address these problems, our study aimed to develop ‘best-bet practice’ based on soil fertility amendment practice (SFAP) that encourages occurrence and diversity of AMF in the soil. Control treatment (no application) was compared with three (3) SFAP used singly or in combination with AMF or two other soil nutrients enhancing organisms (Bacillus and Trichoderma) which included the following: (1) Mavuno (macro- and micronutrients and secondary nutrients) fertilizer, (2) calcium ammonium nitrate (CAN) plus triple super phosphate (TSP) and (3) cattle manure. Maize (Zea mays L.) and common bean (Phaseoli vulgaris L.) were planted at on-station and on-farm plots for two consecutive cropping seasons with the experiment replicated in two benchmark sites of Embu and Taita-Taveta Districts. Embu site recorded a lower soil pH and also very low phosphorus levels compared to Taita site. The number of AMF spores per kg of soil was very low, ranging from 30 to 100, at Embu in the first season and application of SFAP resulted in no significant difference. However, in the second season, use of Trichoderma + CAN plus TSP was shown to significantly stimulate AMF species in the soil, with a 250 % increase in species density compared to use of Bacillus + Manure. At Taita, after the first cropping season, significant change in spore density was only recorded from AMF applied singly with a 66.1 % increase in spore density compared to Control treatment. In comparison, after the second cropping season, use of AMF applied singly, AMF + CAN plus TSP and AMF + Manure increased spore density by 135.4, 109.6 and 100 % respectively compared to Control treatment. Use of AMF applied singly increased species density in the soil by 100 and 81.1 % compared to CAN plus TSP and Trichoderma treatments respectively after first season at Taita site: while after the second cropping season, application of AMF + CAN plus TSP, AMF + Manure and AMF + Mavuno increased AMF species density in the soil by 60.3, 51.5 and 55.9 % respectively compared to Control treatment. These findings provide evidence that it is possible to increase the number of AMF spores in the soil through inoculation with native species and also possibly stimulate dormant species through other SFAP treatments.

Impacts of changing rainfall patterns on mycorrhizal status of a shrub from arid environments

Climate models predict for semi-arid Mediterranean regions a decline in mean annual rainfall as well as a seasonal re-distribution, leading to larger events separated by longer drought spells and increased winter rainfalls. These changes may affect arbuscular mycorrhizal fungi (AMF) and therefore have implications for terrestrial ecosystems. To assess these consequences we focused on AMF in semi-arid plant communities from SE Spain. We monitored root length colonization in Artemisia barrelieri, a shrub species endemic from the most arid systems in SE Spain, growing in plots subjected to different precipitation regimes according to scenarios predicted by the IPCC for this region. Our results showed that mycorrhizal associations responded to changing precipitation regimes. Specifically, vesicles decreased with decreasing annual precipitation and arbuscules increased with stronger seasonal drought but decreased with lower annual precipitation and other seasonal changes. It may then be expected that dryer conditions in arid ecosystems caused by climate change will alter arbuscular mycorrhizal interactions in different ways depending on the intensity of the drought, thereby influencing the dynamics of extant plant communities.

Temporal and compositional differences of arbuscular mycorrhizal fungal communities in conventional monocropping and tree-based intercropping systems

Previous research has found that conventional agricultural systems adversely affect arbuscular mycorrhizal (AM) fungi. However, there is little information on how more ecologically sustainable agricultural practices such as tree-based intercropping (TBI) influence AM fungal communities. In this study, we investigated whether TBI promotes a more abundant and diverse AM fungal community compared to conventional monocropping (CM). Abundance was estimated by measuring spore abundance and hyphal length in soil, and AM fungal colonization of corn (Zea mays) roots. Overall, AM fungal abundance was similar in both systems as corn roots from the CM and TBI systems were heavily colonized (>50%) by AM fungi throughout the growing season. Additionally, soil samples from the CM and TBI systems contained similar spore densities and hyphal length. Molecular analysis of the AM fungal community was assessed using terminal restriction fragment length polymorphism (T-RFLP) analysis of large subunit rRNA genes amplified from roots in the two cropping systems. A total of fourteen AM fungal phylotypes that belonged to the Glomeraceae were found in the two cropping systems. The TBI system had a higher AM fungal richness and contained several taxa not found in the CM system. Molecular analysis of AM fungal communities also revealed significant temporal and compositional differences between the TBI and CM systems. Within the TBI system, tree species differentially influenced the AM fungal community composition in the alley cropping regions. Future research should focus on determining whether compositional differences among AM fungal communities in CM and TBI systems have a functional effect on crop growth and productivity.

Do arbuscular mycorrhizal fungi with contrasting life-history strategies differ in their responses to repeated defoliation?

Arbuscular mycorrhizal (AM) fungi obligatorily depend on carbon (C) resources provided via the plant and therefore fluctuations in C availability may strongly and differently affect AM fungi with different life-history strategies (LHS). In the present study, we examined the effect of repeated defoliation of in vitro grown barrel medic (Medicago truncatula) on the spore and auxiliary cell (AC) production dynamics of a presumed r-strategist (Glomus intraradices) and a presumed K-strategist (Dentiscutata reticulata). Glomus intraradices modulated the production of spores directly to C availability, showing direct investment in reproduction as expected for r-strategists. In contrast, AC production of D. reticulata was not affected after a single defoliation and thus showed higher resistance to fluctuating C levels, as expected for K-strategists. Our results demonstrate that plant defoliation affects the production of extraradical C storage structures of G. intraradices and D. reticulata differently. Our results contribute towards revealing differences in LHS among AM fungal species, a step further towards understanding their community dynamics in natural ecosystems and agroenvironments.

Do arbuscular mycorrhizal fungi with contrasting life-history strategies differ in their responses to repeated defoliation?

Arbuscular mycorrhizal (AM) fungi obligatorily depend on carbon (C) resources provided via the plant and therefore fluctuations in C availability may strongly and differently affect AM fungi with different life-history strategies (LHS). In the present study, we examined the effect of repeated defoliation of in vitro grown barrel medic (Medicago truncatula) on the spore and auxiliary cell (AC) production dynamics of a presumed r-strategist (Glomus intraradices) and a presumed K-strategist (Dentiscutata reticulata). Glomus intraradices modulated the production of spores directly to C availability, showing direct investment in reproduction as expected for r-strategists. In contrast, AC production of D. reticulata was not affected after a single defoliation and thus showed higher resistance to fluctuating C levels, as expected for K-strategists. Our results demonstrate that plant defoliation affects the production of extraradical C storage structures of G. intraradices and D. reticulata differently. Our results contribute towards revealing differences in LHS among AM fungal species, a step further towards understanding their community dynamics in natural ecosystems and agroenvironments.

Effects of water-level fluctuations on the arbuscular mycorrhizal colonization of Typha latifolia L.

Flooding has been described as one of the primary factors affecting arbuscular mycorrhizal (AM) colonization in wetlands. We investigated the effect of water-level fluctuations on AM colonization of Typha latifolia L. using an experimental wetland in southeastern Idaho, USA that received intermittent flows. Unlike previous research that has examined the effect of flooding on AM fungi using topographic gradients, we replicated flooding in time by sampling across multiple flooding events. AM colonization of T. latifolia occurred during flooded and unflooded periods, but was markedly reduced at drawdown. Both hyphal ( R = 0.74, P = 0.015) and arbuscular ( R = 0.67, P = 0.033) colonization were positively correlated with the length of the unflooded period. Taken together, the length of the unflooded period and soil moisture explained 83% of the variation in mean hyphal colonization ( R 2 = 0.83, P = 0.001). Overall, the results of this investigation show that drawdown represents a period of reduced AM colonization in T. latifolia.

Tillage or no-tillage: Impact on mycorrhizae

Arbuscular mycorrhizal (AM) fungi are ubiquitous in agricultural soils. These fungi play important roles in plant nutrition and soil conservation. The persistence of AM fungi in ecosystems depends on the formation and survival of propagules (e.g., spore, hyphae and colonized roots). While spores are considered to be resistant structure that may be view as “long-term” propagules when viable host plants are not present, hyphae are considered to be the main source of inocula when host plants are present and the soil is not disturbed. Tillage is an integral part of modern agriculture that can modify the physical, chemical and biological properties of a soil. Consequently, tillage practices may also affect AM fungi. The various tillage practices used in the management of soil for maximum crop production may negatively impact the survival of AM fungal propagules. In tilled soil, certain AM species may survive while others may disappear. Because AM fungi are more abundant in the topsoil, deep plowing may dilute their propagules in a greater volume of soil, thereby reducing the level of infection of a plant root. Tillage is particularly detrimental to AM hyphae if the soil is tilled in the fall and the hyphae are detached from the host plant. Under no-till (NT), AM fungi survive better, particularly when they are close to the host crop on which they developed. There is speculation that in NT systems, plants may follow old root channels and potentially encounter more AM fungal propagules than plants growing in soil that has been tilled. Management of AM fungi in NT soil is essential to maximizing benefits to crops. This review reports how tillage practices affect AM fungi species richness, survivability and infectivity, and how conservation tillage can increase AM fungi survival, consequently improving plant phosphorus uptake and soil aggregate stability. Key words: Arbuscular mycorrhizal fungi, conservation tillage, conventional tillage, P uptake, soil aggregate stability, cover crops, crop yield

Weed control and cover crop management affect mycorrhizal colonization of grapevine roots and arbuscular mycorrhizal fungal spore populations in a California vineyard

Arbuscular mycorrhizal (AM) fungi naturally colonize grapevines in California vineyards. Weed control and cover cropping may affect AM fungi directly, through destruction of extraradical hyphae by soil disruption, or indirectly, through effects on populations of mycorrhizal weeds and cover crops. We examined the effects of weed control (cultivation, post-emergence herbicides, pre-emergence herbicides) and cover crops (Secale cereale cv. Merced rye, x Triticosecale cv.Trios 102) on AM fungi in a Central Coast vineyard. Seasonal changes in grapevine mycorrhizal colonization differed among weed control treatments, but did not correspond with seasonal changes in total weed frequency. Differences in grapevine colonization among weed control treatments may be due to differences in mycorrhizal status and/or AM fungal species composition among dominant weed species. Cover crops had no effect on grapevine mycorrhizal colonization, despite higher spring spore populations in cover cropped middles compared to bare middles. Cover crops were mycorrhizal and shared four AM fungal species (Glomus aggregatum, G. etunicatum, G. mosseae, G. scintillans) in common with grapevines. Lack of contact between grapevine roots and cover crop roots may have prevented grapevines from accessing higher spore populations in the middles.

Reproductive significance of feeding on saprobic and arbuscular mycorrhizal fungi by the collembolan, Folsomia candida

1. Collembolans have often been credited with negatively affecting arbuscular mycorrhizal (AM) symbioses, mainly by grazing and severing the associated external fungal network from host roots. However, most previous experiments were performed using relatively ‘clean’ systems where other, non‐mycorrhizal, fungi were largely excluded. Yet, plant rhizospheres harbour a wide variety of highly palatable non‐AM fungi, most of which have saprobic lifestyles. 2. In this study we isolated and cultured several rhizosphere fungi, and the collembolan, Folsomia candida, from the Long‐Term Mycorrhiza Research Site, University of Guelph, Canada, to test the hypothesis that, given a choice, collembolans would prefer to feed on saprobic fungi and that such a choice is of adaptive significance to the animals. 3. A laboratory food preference experiment revealed that F. candida favours common saprobic fungi over a variety of AM fungi. Coincidentally, fecundity levels across two Folsomia generations were higher when animals fed exclusively on the preferred fungus, Alternaria alternata. When fed less palatable fungi, fecundity was greatly reduced; in fact animals from the F1 generation were unable to produce any eggs when placed on an exclusive diet of one of the following three AM fungi, Acaulospora spinosa, Scutellospora calospora and Gigaspora gigantea. 4. These results indicate that a strict diet of AM fungi by collembolans has reproductive consequences. Therefore, we propose that under natural conditions these animals spend more time feeding on common saprobic fungi rather than their AM counterparts. This suggests that previous ‘clean’ studies that investigated the interactions between collembolans and AM fungi may have reported exaggerated effects of animal grazing. The influence of collembolans on the functioning of AM symbioses, under more natural conditions, remains not well understood.

Effect of forest fire on number, viability and post-fire re-establishment of arbuscular mycorrhizae

Forest fire can affect arbuscular mycorrhizal (AM) fungi by changing the soil conditions and by directly altering AM proliferation. We studied the effects of a severe forest fire at Margalla Hills near Islamabad on the number and viability of AM fungal propagules in the burnt soil and their role in the re-establishment of post-fire infection in colonized plants. Compared with a nearby control area, the burnt site had a similar number of total spores but a lower number of viable AM fungal propagules. The roots of the two most frequent species at the burnt site, Dodonaea viscosa and Aristida adscensionis, showed a gradual increase in percentage root length colonized by AM fungi in general and hyphal infection in particular. Our results indicate resumption of mycorrhizal activity following the fire, probably from AM hyphae in the roots of these dominant shrubs.