Aerobic Denitrifying Research Articles

Nitrate removal by a novel aerobic denitrifying Pelomonas puraquae WJ1 in oligotrophic condition: Performance and carbon source metabolism

Reducing nitrate contamination in drinking water has become a critical issue in urban water resource management. Here a novel oligotrophic aerobic denitrifying bacterium, Pelomonas puraquae WJ1, was isolated and purified from artificial lake sediments. For the first time, excellent aerobic denitrification capabilities were demonstrated. At a carbon-to‑nitrogen ratio of 5.0, strain WJ1 achieved 100.0 % nitrate removal and 84.92 % total nitrogen removal within 24 h, with no nitrite accumulation. PCR amplification and sequencing confirmed the presence of the denitrification genes napA, nirS, and nosZ in the strain. The nitrogen balance demonstrated that approximately 74.95 % of the initial nitrogen was eliminated as gaseous products under aerobic conditions. Furthermore, carbon balance analysis showed that most electron donors from strain WJ1 were directed towards oxygen, with limited availability for nitrate reduction. A combination of bio-ECO analysis and network modeling indicated that strain WJ1 has robust metabolic capabilities for diverse carbon sources and exhibits high adaptability to complex carbon environments. Overall, Pelomonas puraquae WJ1 removed approximately 45.89 % of the nitrates in raw water, demonstrating significant potential for practical applications in oligotrophic denitrification.

Impacts of O2:CH4 ratios and CH4 concentrations on the denitrification and CH4 oxidations of a novel AME-AD system

Aerobic methane (CH4) oxidation coupled to denitrification (AME-D) is a promising process for the denitrification of low C/N wastewater. Compared with anaerobic denitrifying bacteria, aerobic denitrifying bacteria may enable AME-D have high denitrification ability under aerobic conditions. This study constructed a novel aerobic methane oxidation coupled to aerobic denitrification (AME-AD) system using the typical aerobic denitrifying bacteria Paracoccus pantotrophus ATCC35512 and the typical aerobic methane oxidizing bacteria Methylosinus trichosporium OB3b. The denitrification and CH4 oxidations of AME-AD with different O2:CH4 ratios (0:1, 0.25:1, 0.5:1, 0.75:1, 1:1 and 1.25:1) and CH4 concentrations (0, 14000, 28000, 42000, 56000 and 70000 mg m−3) were investigated in batch experiments. Higher O2:CH4 ratios can significantly improve the denitrification and CH4 oxidations of the AME-AD (P < 0.05). The treatment with an O2:CH4 ratio of 1.25:1 had the highest denitrification rate (0.036 mg h−1) and highest CH4 oxidation rate (0.20 mg h−1). The CH4 concentration in the headspace was positively correlated with the AME-AD denitrification rate. The calculated CH4/NO3−(mol/mol) in most treatments ranged from 5.76 to 6.84. In addition, excessively high O2 and CH4 concentrations can lead to increased nitrous oxide (N2O) production in AME-AD. The N2O production rate was up to 1.00 μg h−1 when the O2:CH4 was 1.25:1. These results can provide data support for the application of AME-AD for low-C/N wastewater treatment and greenhouse gas emission reduction.

Effect of electrooxidation pretreatment on treatment efficiency, membrane fouling and microbial community of a membrane bioreactor treating sludge dewatering wastewater

This study investigated electrooxidation (EO) pretreatment for sludge dewatering wastewater and condensate generated during the process, aiming to enhance its treatment via a membrane bioreactor (MBR) and prevent membrane fouling. EO treatment could achieve a complete suspended solids (SS) removal along with 97.4 % EPS and 90.1 % colour removal under the optimum conditions. However, the NH4+-N and total organic carbon (TOC) concentration in wastewater increased (16 % and 72.8 %, respectively) due to break down of the complex organic substances present in the wastewater. MBR treating EO pretreated wastewater showed significant improvement against membrane fouling, as shown by reduction in transmembrane pressure (TMP) from 15 kPa in control to 0 kPa in the experimental reactor. The MBR operated with EO-treated wastewater and a 16-day HRT resulted in a low effluent NH4+-N concentrations of 469.3 mg/L (74.9 % removal) along with a very low TOC concentration of 24.3 mg/L (98.7 % removal). The microbial community analysis revealed that enrichment of selected organic carbon degraders (Defluviitoga, Pedobacter, and Flavobacteriaceae) and nitrogen cycle bacteria (Dechloromonas, Comamonas, Arenibacter, Brevundimonas, Thauera, and Aequorivita), including some aerobic denitrifiers (Aquamicrobium and Chryseobacterium) in the experimental reactor treating EO-pretreated wastewater is responsible for enhancing microbial degradation and its overall performance.

Denitrification characteristics and potential application of a novel aerobic denitrifying bacterium, Pseudomonas plecoglossicida, isolated from the Exopalaemon carinicauda pond

Denitrification characteristics and potential application of a novel aerobic denitrifying bacterium, Pseudomonas plecoglossicida, isolated from the Exopalaemon carinicauda pond

Aerobic denitrifying bacterial community with low C/N ratio remove nitrate from micro-polluted water: Metagenomics unravels denitrification pathways

The efficient nitrogen removal from micro-polluted source water is an international challenge to be solved urgently. However, the inner denitrification mechanism of native aerobic denitrifying bacterial communities in response to carbon scarcity remains relatively unclear. Here, the bacterial community XT6, screened from an oligotrophic reservoir, exhibited aerobic denitrifying capacity under low-carbon environments. Up to 76.79–81.64 % of total organic carbon (TOC) and 51.48–67.60 % of NO3−-N were removed by XT6 within 48 h at C/N ratios of 2.0–3.0. Additionally, the nitrogen balance experiments further manifested that 26.27–38.13 % of NO3−-N was lost in gaseous form. As the C/N ratio decreased, XT6 tended to generate more extracellular polymeric substances (EPS), with the tightly bound EPS showing the largest increase. Pseudomonas and Variovorax were quite abundant in XT6, constituting 59.69 % and 28.65 % of the total sequences, respectively. Furthermore, metagenomics analysis evidenced that XT6 removed TOC and nitrate mainly through the tricarboxylic acid cycle and aerobic denitrification. Overall, the abovementioned results provide a deeper understanding of the nitrogen metabolic pathways of indigenous aerobic denitrifying bacterial communities with low C/N ratios and offer useful guidance for controlling nitrogen pollution in oligotrophic ecosystems.

Increasing fish production in recirculating aquaculture system by integrating a biofloc-worm reactor for protein recovery

Aquaculture, producing half of global fish production, offers a high-quality protein source for humans. Improving nitrogen use efficiency (NUE) through microbial protein recovery is crucial for increasing fish production and reducing environmental footprint. However, the poor palatability and high moisture content of microbial protein make its utilization challenging. Here, a biofloc-worm reactor was integrated into a recirculating aquaculture system (BW_RAS) for the first time to convert microbial protein into Tubificidae (Oligochaeta) biomass, which was used as direct feed for culturing fish. Batch experiments indicated that an aeration rate of 0.132 m3L−1h−1 and a worm density of 0.3 g cm−2 on the carrier were optimal for microbial biomass growth and worm predation, respectively. Compared to the biofloc reactor-based recirculating aquaculture system (B_RAS), the BW_RAS improved water quality, NUE, and fish production by 17.1 % during a 120-day aquaculture period. The abundance of heterotrophic aerobic denitrifier Deinococcus in BW_RAS was one order of magnitude higher than in B_RAS, while heterotrophic bacteria Mycobacterium was more abundant in B_RAS. Denitrifiers cooperated with organic matter degraders and nitrogen assimilation bacteria for protein recovery and gaseous nitrogen loss while competing with predatory bacteria. Function prediction and qPCR indicated greater aerobic respiration, nitrate assimilation, nitrification (AOB-amoA), and denitrification (napA, nirK, nirS, nosZI), but lower fermentation in BWR compared to BR. This study demonstrated that BW_RAS increased microbial protein production and aerobic nitrogen cycling through ongoing worm predation, further enhancing fish production to a commercially viable level.

Effect of humic acid on aerobic denitrification by Achromobacter sp. strain GAD-3

Humic acid (HA), a common natural organic matter, could affect conventional anoxic denitrification. Aim of this study was to investigate effect of HA on the process of aerobic denitrification in Achromobacter sp. GAD-3, an aerobic denitrifying strain. The findings demonstrated that an increase in HA concentrations (≥5mgL-1) promoted the aerobic denitrification process (excluding N2O reduction), manifesting as higher rates of nitrate removal (6.67-11.1mgL-1h-1) and lower levels of nitrite accumulation (30.2-20.7mgL-1). This was attributed to the increased electron transfer activities and denitrifying reductase activities (including NAR, NIR and NOR) facilitated by HA. Accordingly, the expression of denitrification genes such as napA, cnorB, and nirS was enhanced by HA. Nonetheless, the nosZ gene and N2OR activity underwent suppression by HA, which was accountable for N2O emission. It is crucial to understand the HA mechanism towards aerobic denitrifiers for wastewater treatment plants to enhance nitrogen removal.

Sponge iron enriches autotrophic/aerobic denitrifying bacteria to enhance denitrification in sequencing batch reactor

Sponge iron (SFe) coupled with a sludge system has great potential for improving biological denitrification; however, the underlying mechanism is not yet fully understood. In this study, the denitrification performance and microbial characteristics of ordinary sludge and SFe-sludge systems were investigated. Overall, the SFe-sludge reactor had faster ammonium degradation rate (94.0 %) and less nitrate accumulation (1.5–53.3 times lower) than ordinary reactor during the complete operation cycle of sequencing batch reactors. The addition of SFe increased the activities of nitrate and nitrite reductases. The total relative abundance of autotrophic denitrifying bacteria (Acidovorax, Arenimonas, etc.) in the SFe-sludge system after 38 days of operation was found to be 10.6 % higher than that in the ordinary sludge reactor. The aerobic denitrifying bacteria (Dokdonella, Phaeodactylibacter, etc.) was 5.3 % higher than ordinary sludge. The SFe-sludge system improved denitrification by enriching autotrophic/aerobic denitrifying bacteria in low carbon-to-nitrogen ratio wastewater treatment.

Coordination of elemental sulfur and organic carbon source stimulates simultaneous nitrification and denitrification toward low C/N ratio wastewater

The feasibility of inducing simultaneous nitrification and denitrification (SND) by S0 for low carbon to nitrogen (C/N) ratio wastewater remediation was investigated. Compared with S0 and/or organics absent systems (−3.4 %∼5.0 %), the higher nitrogen removal performance (18.2 %∼59.8 %) was achieved with C/N ratios and S0 dosages increasing when S0 and organics added simultaneously. The synergistic effect of S0 and organics stimulated extracellular polymeric substances secretion and weakened intermolecular binding force of S0, facilitating S0 bio-utilization and reducing the external organics requirement. It also promoted microbial metabolism (0.16 ∼ 0.24 μg O2/(g VSS·h)) and ammonia assimilation (5.9 %∼20.5 %), thereby enhancing the capture of organics and providing more electron donors for SND. Furthermore, aerobic denitrifiers (15.91 %∼27.45 %) and aerobic denitrifying (napA and nirS) and ammonia assimilating genes were accumulated by this synergistic effect. This study revealed the mechanism of SND induced by coordination of S0 and organics and provided an innovative strategy for triggering efficient and stable SND.

Impact of Gas-to-Water Ratio on Treatment Efficiency of Submerged-Macrophyte Constructed Wetland Systems

Constructed wetland systems employing submerged macrophytes are increasingly utilized for treating municipal and industrial wastewater, as well as odoriferous and eutrophic water bodies. However, the pollutant removal efficiency of these systems needs further enhancement. In this study, we examined the impact of the gas-to-water ratio on the treatment efficiency of the constructed wetland of Vallisneria. We also examined the extracellular polymeric substances (EPSs) of the floating biofilm and the structure of the microbial community in this system. Our findings showed that the gas-to-water ratio significantly affects the total nitrogen (TN) removal rate within the Vallisneria wetlands, with an optimum removal at a gas-to-water ratio of 15:1, while the removal efficiencies for chemical oxygen demand (COD), NH4+-N, and total phosphorus (TP) remain relatively unaffected. Increased gas-to-water ratios corresponded to a notable decrease in biofilm EPSs. High-throughput sequencing analysis demonstrated a shift in biofilm-denitrifying bacteria from anoxic heterotrophic to aerobic denitrifiers, alongside a significant rise in the abundance of denitrifying bacteria, whereas excessively high gas-to-water ratios inhibited the growth of these bacteria. A gas-to-water ratio of 15:1 constituted the optimal condition for ecological restoration of the water body within the Vallisneria wetland systems. These results could contribute to the optimization of submerged-macrophyte constructed wetland system design and the enhancement of treatment efficiency.

The fate of various organic compounds including pharmaceuticals in the treatment of landfill leachate and anaerobic digestate using deammonification

Studies focusing on the fate of organic compounds specifically recalcitrant organics and pharmaceuticals in a deammonification plant are scarce. This study downscaled a full-scale deammonification plant, which was being operated with the same wastewater streams of this study and evaluated for the first time the fate of different fractions of organic compounds in deammonification process along with the removal of nitrogenous compounds. Organic compounds in the feed and effluent were analyzed and their changes in the deammonification process were characterized. The results demonstrate that deammonification achieved over 90% of ammonium removal. COD monitoring revealed that around 11% of COD was reduced during the process mainly due to aerobic COD degradation and heterotrophic denitrifying bacteria. Analysis of the organic fractions revealed that high molecular weight components (around 11 kDa) are susceptible to removal and their concentrations tend to decrease in the reactor. Concentrations of humic substances, specifically fulvic acid-like substances, were reduced. Tracking nine different pharmaceutical residues revealed that morphine and cotinine were completely removed, while pregabalin and oxazepam which are known to be highly recalcitrant were more than 60% removed. The research finding can help in optimizing treatment processes by revealing the fate of different organic compounds, especially pharmaceuticals, within the deammonification process, thereby contributing to better effluent quality, regulatory compliance, and environmental protection.

Dynamic Response of Aerobic Denitrification Bacteria to Water Quality in Baiyangdian Lake Under Different Hydrological Scenarios

In order to explore the evolution law and driving mechanism of aerobic denitrification bacteria in Baiyangdian Lake under different hydrological scenarios, based on water quality survey and high-throughput sequencing technology, this study conducted a water quality factor analysis and aerobic denitrification bacteria α-diversity analysis, species composition, and network analysis. The results showed that the water body of Baiyangdian Lake was weakly alkaline, with the highest T and the lowest DO in the rainy season and the lowest T and the highest DO in the freezing season. There were significant differences between NH4+-N, NO2--N, NO3--N, TN, permanganate index, Fe, and Mn in Baiyangdian water under different hydrological scenarios (P &lt; 0.01), and there was no significant difference in TP under different hydrological scenarios (P &gt; 0.05). The largest category in water bodies under different hydrological scenarios was Proteobacteria, and the genera with a higher relative abundance were Magnetospirillum, Aeromonas, Pseudomonas, Azospirillum, and Bradyrhizobium. In addition, within the aerobic denitrifying bacteria community, there were significant differences in α-diversity (P &lt; 0.001), with the highest abundance of microbial communities occurring during the freezing period, and the highest diversity and evenness of microbial communities during the dry and freezing periods. According to the RDA and Mantel analyses, the water quality driving factors of flora were different under different hydrological scenarios. The water quality driving factors of flora in the dry season were pH, NO3--N, NO2--N, and permanganate index; the driving factors of flora in the rainy season were pH, T, DO, NO2--N, and TP; the driving factors of flora in the normal season were NO2--N, Fe, and permanganate index; and the driving factors of flora in the freezing season were NO3--N and NONO2--N. Network analysis showed that there were temporal differences in species related to water quality driving factors. The genera related to water quality driving factors during the dry season were Magnetospirillum, Aeromonas, and Azoarcus, whereas the genera related to the rainy season were Magnetospirillum, Pseudomonas, and Aeromonas. The genera related to the normal season were Magnetospirillum, Pseudomonas, and Limnohabitans, and the genera related to the freezing period were Magnetospirillum, Azoarcus, and Pseudomonas. The relationship between key water quality factors (mainly T, DO, NO3--N, and permanganate index) and aerobic denitrification flora in different hydrological scenarios was gradually changing with time. In conclusion, the study on the evolution characteristics of aerobic denitrification bacteria in Baiyangdian Lake under different hydrological scenarios and the driving mechanism of environmental factors could provide a basis for understanding the evolution mechanism of aerobic denitrification bacteria in the natural environment.

Isolation and identification of an aerobic denitrifying bacteria and its denitrification performance

Isolation and identification of an aerobic denitrifying bacteria and its denitrification performance

Optimal conditions and nitrogen removal performance of aerobic denitrifier Comamonas sp. pw-6 and its bioaugmented application in synthetic domestic wastewater treatment.

To assess the possibility of using aerobic denitrification (AD) bacteria with high NO2--N accumulation for nitrogen removal in wastewater treatment, conditional optimization, as well as sole and mixed nitrogen source tests involving AD bacterium, Comamonas sp. pw-6 was performed. The results showed that the optimal carbon source, pH, C/N ratio, rotational speed, and salinity for this strain were determined to be succinate, 7, 20, 160 rpm, and 0%, respectively. Further, this strain preferentially utilized NH4+-N, NO3--N, and NO2--N, and when NO3--N was its sole nitrogen source, 92.28% of the NO3--N (150 mg·L-1) was converted to NO2--N. However, when NH4+-N and NO3--N constituted the mixed nitrogen source, NO3--N utilization by this strain was significantly lower (p < 0.05). Therefore, a strategy was proposed to combine pw-6 bacteria with traditional autotrophic nitrification to achieve the application of pw-6 bacteria in NH4+-N-containing wastewater treatment. Bioaugmented application experiments showed significantly higher NH4+-N removal (5.96 ± 0.94 mg·L-1·h-1) and lower NO3--N accumulation (2.52 ± 0.18 mg·L-1·h-1) rates (p < 0.05) than those observed for the control test. Thus, AD bacteria with high NO2--N accumulation can also be used for practical applications, providing a basis for expanding the selection range of AD strains for wastewater treatment.

The combination of nanobubble aeration and iron-based multi-carbon source composites achieves efficient aquaculture wastewater nitrogen removal

The primary constraints for efficient nitrogen removal in aquaculture ponds by indigenous aerobic denitrifiers are oxygen depletion in sediment and the shortage of electron donors. This study innovatively combined nanobubble aeration with iron-based multi-carbon source composites to stimulate aerobic denitrifiers, significantly improving the sediment's oxygen level and supplementing the electron donors of the system. Compared with the systems that incorporated multi-carbon source composites (MCSC) or iron-based multi-carbon source composites (IMCSC) under diffused air aeration conditions, the system that employed nanobubble aeration and iron-based multi-carbon source composites (NIMCSC) demonstrated an increase in total nitrogen (TN) elimination rate by 14.07% and 7.46%, respectively, reaching 89.75%. Microbial community analysisrevealed that the NIMCSC systemenriched the mixotrophic aerobic denitrifiers and fostered a symbiotic relationship among the bacterial communities. Moreover, compared with the MCSC and IMCSC systems, the NIMCSC system highlighted a significant increase in the average abundance of key indigenous aerobic denitrifiers. Meanwhile, the production and transfer process of electrons were stimulated, providing more energy and electron donors and assisting various abundant key functional enzymes to achieve efficient mixotrophic aerobic denitrification in the NIMCSC system. This study presenteda novel approach to achieve efficient aquaculture wastewater nitrogen removal.

The growth and nutrient removal properties of heterotrophic microalgae Chlorella sorokiniana in simulated wastewater containing volatile fatty acids

To reduce the high cost of organic carbon sources in waste resource utilization in the cultivation of microalgae, volatile fatty acids (VFAs) derived from activated sludge were used as the sole carbon source to culture Chlorella sorokiniana under the heterotrophic cultivation. The addition of VFAs in the heterotrophic condition enhanced the total nitrogen (TN) and phosphorus (TP) removal of C. sorokiniana, which proved the advantageous microalgae in using VFAs in the heterotrophic culture after screening in the previous study. To discover the possible mechanism of nitrogen and phosphorus adsorption in heterotrophic conditions by microalgae, the effect of different ratios of VFAs (acetic acid (AA): propionic acid (PA): butyric acid (BA)) on the nutrient removal and growth properties of C. sorokiniana was studied. In the 8:1:1 group, the highest efficiency (77.19%) of VFAs assimilation, the highest biomass (0.80 g L−1) and lipid content (31.35%) were achieved, with the highest TN and TP removal efficiencies of 97.44 % and 91.02 %, respectively. Moreover, an aerobic denitrifying bacterium, Pseudomonas, was determined to be the dominant genus under this heterotrophic condition. This suggested that besides nitrate uptake and utilization by C. sorokiniana under the heterotrophy, the conduct of the denitrification process was also the main reason for obtaining high nitrogen removal efficiency.

Irons differently modulate bacterial guilds for leading to varied efficiencies in simultaneous nitrification and denitrification (SND) within four aerobic bioreactors

As a novel biological wastewater nitrogen removal technology, simultaneous nitrification and denitrification (SND) has gained increasing attention. Iron, serving as a viable material, has been shown to influence nitrogen removal. However, the precise impact of iron on the SND process and microbiome remains unclear. In this study, bioreactors amended with iron of varying valences were evaluated for total nitrogen (TN) removal efficiencies under aerobic conditions. The acclimated control reactor without iron addition (NCR) exhibited high ammonia nitrogen (AN) removal efficiency (98.9%), but relatively low TN removal (78.6%) due to limited denitrification. The reactor containing zero-valent iron (Fe0R) demonstrated the highest SND rate of 92.3% with enhanced aerobic denitrification, albeit with lower AN removal (84.1%). Significantly lower SND efficiencies were observed in reactors with ferrous (Fe2R, 66.3%) and ferric (Fe3R, 58.2%) iron. Distinct bacterial communities involved in nitrogen metabolisms were detected in these bioreactors. The presence of complete ammonium oxidation (comammox) genus Nitrospira and anammox bacteria Candidatus Brocadia characterized efficient AN removal in NCR. The relatively low abundance of aerobic denitrifiers in NCR hindered denitrification. Fe0R exhibited highly abundant but low-efficiency methanotrophic ammonium oxidizers, Methylomonas and Methyloparacoccus, along with diverse aerobic denitrifiers, resulting in lower AN removal but an efficient SND process. Conversely, the presence of Fe2+/Fe3+ constrained the denitrifying community, contributing to lower TN removal efficiency via inefficient denitrification. Therefore, different valent irons modulated the strength of nitrification and denitrification through the assembly of key microbial communities, providing insight for microbiome modulation in nitrogen-rich wastewater treatment.

Optimization of nitrogen removal by immobilized heterotrophic nitrification aerobic denitrifying bacterium using response surface methodology

An innovative bacterial carrier complex embedded with polyvinyl alcohol and sodium alginate complex (P.S.) was developed, using the heterotrophic nitrification-aerobic denitrification (HN-AD) strain Paracoccus sp. QD-21, which was carefully selected from activated sludge. The performance of the immobilized bacterium on ammonia nitrogen, nitrate nitrogen, and nitrite nitrogen was thoroughly analyzed, aiming to investigate the synergistic effects of the P.S.-encapsulated bacterial carrier on the HN-AD strain QD-21. To assess the adaptability of the immobilized bacterium, various single-factor analysis experiments were conducted, including the assessment of carbon source, C/N, temperature, pH, rotational speed, and salinity. Subsequently, response surface methodology was employed to conduct further optimization, leading to the identification of optimum conditions (147.31 rpm, 36°C, C/N 8.72, pH 8). Under these conditions, an impressive ammonia nitrogen removal rate of 94.82 ± 0.82% was achieved. Furthermore, practical wastewater treatment experiments were carried out, demonstrating a remarkable 63.31% increase in ammonia nitrogen removal when the carrier with HN-AD bacterium attached was employed. Notably, the addition of a specific carbon source remarkably enhanced the treatment efficiency, resulting in a complete removal rate of 100%. These significant findings lay a solid foundation for the engineering application of the HN-AD bacterium and highlight the promising potential of the P.S.-encapsulated bacterial carrier complex in various applications.

Lake microbiome composition determines community adaptability to warming perturbations

BackgroundMicrobial communities are crucial for ecosystems. A central goal of microbial ecological research is to simplify the biodiversity in natural environments and quantify the functional roles to explore how the ecosystems respond under different environmental conditions. However, the research on the stability and dynamics of lake microbes in response to repeated warming stress is limited.MethodsTo exclude confounding environmental factors, we conducted a 20-day repeated warming simulation experiment to examine the composition and function dynamics of lake microbial communities.ResultsExperimental warming significantly altered the community structure of bacteria instead of fungi. Microbial community structure, together with microbial biomass, jointly regulated the function of microbial communities. The plummeting of aerobic denitrifiers Pseudomonadaceae decreased by 99% (P < 0.001) after high temperature, leading to reduced microbial nitrogen metabolism on nitrogen respiration and nitrate respiration. Under warming conditions, the microbial community with higher adaptability showed more positive correlations and less competitive relationships in co-occurrence networks to acclimate to warming.ConclusionMicrobiome composition controlled carbon and nitrogen metabolism, thus determining lake microbial communities’ adaptability to heat stress. This study extended our insights on the lake microbial community response and adaptability under warming drivers.

Metabolic coupling between soil aerobic methanotrophs and denitrifiers in rice paddy fields

Paddy fields are hotspots of microbial denitrification, which is typically linked to the oxidation of electron donors such as methane (CH4) under anoxic and hypoxic conditions. While several anaerobic methanotrophs can facilitate denitrification intracellularly, whether and how aerobic CH4 oxidation couples with denitrification in hypoxic paddy fields remains virtually unknown. Here we combine a ~3300 km field study across main rice-producing areas of China and 13CH4-DNA-stable isotope probing (SIP) experiments to investigate the role of soil aerobic CH4 oxidation in supporting denitrification. Our results reveal positive relationships between CH4 oxidation and denitrification activities and genes across various climatic regions. Microcosm experiments confirm that CH4 and methanotroph addition promote gene expression involved in denitrification and increase nitrous oxide emissions. Moreover, 13CH4-DNA-SIP analyses identify over 70 phylotypes harboring genes associated with denitrification and assimilating 13C, which are mostly belonged to Rubrivivax, Magnetospirillum, and Bradyrhizobium. Combined analyses of 13C-metagenome-assembled genomes and 13C-metabolomics highlight the importance of intermediates such as acetate, propionate and lactate, released during aerobic CH4 oxidation, for the coupling of CH4 oxidation with denitrification. Our work identifies key microbial taxa and pathways driving coupled aerobic CH4 oxidation and denitrification, with important implications for nitrogen management and greenhouse gas regulation in agroecosystems.