Abstract BACKGROUND Pediatric brain tumours (pBT) are molecularly diverse and with the advent of targeted-therapies it is important to decipher molecularly. METHODS Single institutional non-consecutive pBT (<18 years) cohort include – a. high-grade glial tumour (HGG; H3-wildtype, IDH1/2-wildtype, immunohistochemically MMR-protein-proficient, negative for NTRK/ALK-rearrangements by FISH in <3 years), b. high-grade CNS neuroepithelial tumour, NOS (cNET), c & d. pilocytic astrocytoma (LGG-PCA), and low-grade glial/glioneuronal tumour LGG-LGGNT), histologically not typical of PCA nor any defined entity that were negative for BRAFV600mutations, KIAA1549- BRAF (16-9, 15-9, & 16-10) fusions, e. low-grade glial tumour with diffuse architecture (LGG-DLGG) that were negative for IDH1R132/IDH2R172-mutations. These were evaluated for NGS-based-panel (42 genes, 137 RNA fusions, and 24 genes for amplification – STS-plus-panel Sophia Genetics). RESULTS 41 cases (HGG: 12, cNET:2, LGG-PCA: 10 & 1, LGG-LGGNT: 13 & LGG-DLGG: 3) formed the study-cohort. a. HGG: 5 were <3 years (supratentorial [ST]: 3; posterior-3rd-ventricular [p3v]: 1 & posterior-fossa [PF]: 1), 2 showed mutations in TP53-exons 5 & 6 respectively, one ST case showed SND1-AKT2 (9:7) fusion. Of 6-18 years (all ST location), 3 showed TP53-mutations, one showed PDGFA & KIT-amplification with SF3B1-mutation and one showed BRAFV600E-mutation. b. cNET: BRAFV600E and TP53-mutation was observed in each of the case respectively. c. LGG-PCA: one case showed FAM131B-BRAF (2:9) fusion. One KIAA1549- BRAF (15-9) fusion case was evaluated as it progressed, showed additional TP53-mutation. d. LGG-LGGNT: one (4/F; PF location) showed EGFR-gains with TERT-promoter (C228T) mutation (like adult-type glioma), one showed NF1-exon 12 mutation with KIAA1549-RAD51 (18:4) fusion, one showed CDKN2A-exon 2 mutation and one (midbrain) case showed BRAFV600E-mutation. e. LGG-DLGG: one (11/M, occipital-SOL) showed KEAP1-exon 5 mutation with KIAA1549- BRAF (15:9) fusion. CONCLUSIONS TP53-mutations is common in HGG, infantile HGG can show non-ALK/NTRK fusions. LGG can show non-BRAF/KIAA1549-fusions, rarely can show KEAP1 mutations and adult-type-like alterations. Target-panel NGS-based assay can help to molecularly decipher to a certain extent, especially for instituting targeted-therapies.
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