Adult Trout Research Articles

Cutthroat trout responses to increased light via conventional and alternative riparian buffers

Forested headwaters, particularly in the Pacific Northwest, USA, are typically heavily shaded by dense stands of riparian vegetation. Reduced riparian cover can occur from natural or anthropogenic events, resulting in increased light which can increase fish biomass by promoting in-stream food resources. We conducted a 5 y before-after-control-impact (BACI) study on 10 small streams in the Oregon Coast Range, USA, and investigated how changes to the magnitude of stream light, mediated by conventional and alternative riparian buffer configurations adjacent to upland timber harvest, changed Coastal Cutthroat Trout (Oncorhynchus clarkii clarkii) abundance, biomass, bioenergetics, diet composition, and the availability of aquatic food resources. Riparian buffer treatments reduced canopy cover as much as 34 % cover (98–99 % pre; 64–98 % post-treatment) and enhanced total available sunlight reaching the stream surface by 8–31 % relative to unharvested references that only changed by 3–4 %. In the first year following the treatments, young-of-year trout (YOY, age 0) densities changed by between +0.1 and +0.78 #/m2 in treatment streams while densities changed by –0.001 and +0.02 #/m2 at reference streams. Although change in YOY densities was positively correlated with change in stream light (rs=0.81, p=0.02), changes in basal resources (periphyton and macroinvertebrates) were both positive and negative and did not increase with change in stream light. Adult (age 1+) trout responses were mixed in the first year post-treatment, but changed by –0.14 to +0.24 #/m2 at treatment sites (–0.02 to –0.05 at reference sites) in the second year post-treatment, likely due to increased recruitment from the strong cohort of YOY in the first year. Bioenergetics analysis in one post-treatment year showed that adult trout did not experience greater summer growth (–0.003 to +0.0005 g g−1 d−1) or proportions of maximum consumption (0.18–0.25) in streams with more light than at reference streams (–0.001 and +0.001 g g−1 d−1, 0.19 and 0.23). Overall, while standing stock assessments suggest that fish showed some increases after experimental treatments that increased light, our data did not provide the clear mechanistic evidence for bottom-up drivers that was expected. The relationship between canopy removal and fish production is not always predictable in small headwater streams, and even though fish populations were generally resilient to riparian manipulation, evaluations of terrestrial food resources, the dynamic between canopy cover and light reaching the stream, and changes to temperature may lend valuable insight on the impacts to fish populations.

Characterization of Bacterial Communities on Trout Skin and Eggs in Relation to Saprolegnia parasitica Infection Status.

We have investigated the changes in the microbial communities on the surface of trout eggs and the skin of adult trout in relation to the presence of Saprolegnia parasitica. This pathogen causes saprolegniosis, a disease responsible for significant losses in salmonid farms and hatcheries. It is known from other disease systems that the host-associated microbiome plays a crucial role in the defence against pathogens, but if the pathogen predominates, this can lead to dysbiosis. However, analyses of the effects of S. parasitica on the diversity, composition, and function of microbial communities on fish skin and eggs are scarce. Thus, we have collected skin swabs from injured and healthy trout (N = 12), which differed in S. parasitica load, from three different fish farms in Croatia (Kostanjevac, Radovan, and Solin), while trout egg samples (N = 12) were infected with S. parasitica in the laboratory. Illumina sequencing of the V4 region of the 16S rRNA marker gene showed that infection with S. parasitica reduced the microbial diversity on the surface of the eggs, as evidenced by decreased Pielou's evenness and Shannon's indices. We further determined whether the bacterial genera with a relative abundance of >5.0% in the egg/skin samples were present at significantly different abundances in relation to the presence of S. parasitica. The results have shown that some genera, such as Pseudomonas and Flavobacterium, decreased significantly in the presence of the pathogen on the egg surface. On the other hand, some bacterial taxa, such as Acinetobacter and Janthinobacterium, as well as Aeromonas, were more abundant on the diseased eggs and the injured trout skin, respectively. Finally, beta diversity analyses (weighted UniFrac, unweighted UniFrac, Bray-Curtis) have shown that the sampling location (i.e., fish farm), along with S. parasitica infection status, also has a significant influence on the microbial communities' composition on the trout skin and eggs, demonstrating the strong influence of the environment on the shaping of the host surface microbiome. Overall, we have shown that the presence of S. parasitica was associated with changes in the diversity and structure of the trout skin/egg microbiome. The results obtained could support the development of new strategies for the management of saprolegniosis in aquaculture.

Ecological and biogeomorphological modelling of brown trout (Salmo trutta L.): Hints for improvements

AbstractThe loss of biodiversity in freshwater environments is becoming an increasing problem globally. As a result, many tools have been developed and improved to reduce this decline. However, there is still a need for the identification and evaluation of precise restoration measures to improve habitats and preserve sentinel freshwater species, such as brown trout. This paper provides an up‐to‐date viewpoint about the life history, habitat characteristics, suitability conditions, and metapopulation dynamic modelling of brown trout, aiming to identify and discuss gaps and propose possible improvements based on collating and reinterpreting literature data. Results suggest that habitat suitability curves for environmental and hydraulic variables possess some degree of universality, for spawning habitat, fry, juvenile and adult trout. Further, an improved method to estimate the amount of suitable area by including the role of stream obstacles (i.e., macro‐roughness with characteristic size in the order of the mean water depth) is proposed and discussed. This approach can be integrated into advanced metapopulation models and will allow experts to evaluate the best measures towards restoring and preserving freshwater riverine environments.

Brown trout in Oder estuary tributaries: genetic structure, stocking, and admixture.

Several rivers that are tributaries of the Oder estuary are inhabited by Salmo trutta L, the most important of which are Ina, Gowienica, and Wołczenica. Both forms of the species, sea trout and resident brown trout, are present. All rivers are traditionally stocked with either sea trout from the neighboring Pomeranian river Rega basin or resident brown trout from various locations. To examine populations in these rivers in terms of genetic structure, genetic diversity, and origin, they were analyzed using 13 microsatellite loci. Relatedness was also assessed for fish stocked in the same year. The obtained genotypes were compared with breeding stocks used for stocking in Poland. The analyses revealed a significant genetic distance between adult individuals from Ina and Rega Rivers and fish caught during electrofishing. Strong kinship relationships were identified in the sampled areas, with high proportions of fish originating from stocking and their dominance in numbers over wild juveniles, primarily in smaller tributaries. Additionally, clear separation in the origin of stocked individuals was observed. Adult trout from Ina and Rega are genetically closer to northern brown trout lineages, providing crucial information for the management and biodiversity conservation of Polish Salmo trutta populations.

Shrinking sizes of trout and salamanders are unexplained by climate warming alone

Decreases in body sizes of animals related to recent climate warming can affect population persistence and stability. However, direct observations of average sizes over time and their interrelationships with underlying density-dependent and density-independent processes remain poorly understood owing to the lack of appropriate long-term datasets. We measured body size of two species common to headwater streams in coastal and Cascades ecoregions of the Pacific Northwest of North America over multiple decades, comparing old-growth and managed forests. We found consistent decreases in median length of Coastal Cutthroat Trout Oncorhynchus clarkii clarkii, but a coexisting species, the Coastal Giant Salamander Dicamptodon tenebrosus, appears to be more resilient to size changes over time. Based on observed trends, adult trout have decreased in length by 6–13% over the last 30 years. Length decreased more in larger compared to smaller animals, suggesting that these effects reflect changes in growth trajectories. Results from a model-selection approach that included hydroclimatic and biological information as covariates in one of our study ecoregions demonstrated that stream temperature alone did not explain observed length reductions. Rather, a combination of density-dependent (animal abundances) and local density-independent factors (temperature, habitat, and streamflow) explained observed patterns of size. Continued decreases in size could lead to trophic cascades, biodiversity loss, or in extreme cases, species extirpation. However, the intricate links between density-independent and density-dependent factors in controlling population-level processes in streams need further attention.

Constitutive Neurogenesis and Neuronal Plasticity in the Adult Cerebellum and Brainstem of Rainbow Trout, Oncorhynchus mykiss.

The central nervous system of Pacific salmon retains signs of embryonic structure throughout life and a large number of neuroepithelial neural stem cells (NSCs) in the proliferative areas of the brain, in particular. However, the adult nervous system and neurogenesis studies on rainbow trout, Oncorhynchus mykiss, are limited. Here, we studied the localization of glutamine synthetase (GS), vimentin (Vim), and nestin (Nes), as well as the neurons formed in the postembryonic period, labeled with doublecortin (DC), under conditions of homeostatic growth in adult cerebellum and brainstem of Oncorhynchus mykiss using immunohistochemical methods and Western Immunoblotting. We observed that the distribution of vimentin (Vim), nestin (Nes), and glutamine synthetase (GS), which are found in the aNSPCs of both embryonic types (neuroepithelial cells) and in the adult type (radial glia) in the cerebellum and the brainstem of trout, has certain features. Populations of the adult neural stem/progenitor cells (aNSPCs) expressing GS, Vim, and Nes have different morphologies, localizations, and patterns of cluster formation in the trout cerebellum and brainstem, which indicates the morphological and, obviously, functional heterogeneity of these cells. Immunolabeling of PCNA revealed areas in the cerebellum and brainstem of rainbow trout containing proliferating cells which coincide with areas expressing Vim, Nes, and GS. Double immunolabeling revealed the PCNA/GS PCNA/Vim coexpression patterns in the neuroepithelial-type cells in the PVZ of the brainstem. PCNA/GS coexpression in the RG was detected in the submarginal zone of the brainstem. The results of immunohistochemical study of the DC distribution in the cerebellum and brainstem of trout have showed a high level of expression of this marker in various cell populations. This may indicate: (i) high production of the adult-born neurons in the cerebellum and brainstem of adult trout, (ii) high plasticity of neurons in the cerebellum and brainstem of trout. We assume that the source of new cells in the trout brain, along with PVZ and SMZ, containing proliferating cells, may be local neurogenic niches containing the PCNA-positive and silent (PCNA-negative), but expressing NSC markers, cells. The identification of cells expressing DC, Vim, and Nes in the IX-X cranial nerve nuclei of trout was carried out.

Effects of age and seasonal temperatures on cortisol levels and GHR, IGF-I, and IGF-II expressions in rainbow trout (Oncorhynchus mykiss)

The growth hormone (GH)/insulin-like growth factor (IGF) endocrine axis regulates the cellular growth and organ development in related to changing environmental conditions and age. The aim of this study is to determine growth factor genes, which are biological markers of growth in muscle and liver of rainbow trout (Oncorhynchus mykiss) in different seasonal temperatures and age ranges and the reveal of the relationship between serum cortisol (COR) levels from stress parameters. No difference was found in serum COR levels between the groups with respect to temperature and age. Serum GH levels were found to be higher in the summer juvenile trout compared to the winter juvenile and adult trouts. There was no difference in liver growth hormone receptor (GHR) mRNA levels of juvenile and adult trouts in winter while insulin-like growth factor-I (IGF-I) and insulin-like growth factor-II (IGF-II) mRNA levels in liver and muscle tissues were found to be higher in juvenile trout compared to adults. Among trout of different ages, GHR, IGF-I and IGF-II mRNA levels in liver in summer were higher for juvenile trout compared to adults. Muscle IGF-I mRNA levels in summer were higher in adult trout compared to juveniles. IGF-II mRNA levels in liver and muscle tissues of juvenile trout showed an increase in winter compared to in summer. While the GHR and IGF-II mRNA levels in the liver tissue of adult trout were observed to higher in winter compared to summer, IGF-I mRNA levels were found to be higher in summer. GHR, IGF-I and IGF-II mRNA levels in muscle tissue of adult trout were found to be higher in summer than in winter. This study indicated that juvenile and adult rainbow trout (Oncorhynchus mykiss) are adapted to both winter and summer temperature and that GHR, IGF-I and IGF-II genes are highly expressed.

Wildfire in western Oregon increases stream temperatures, benthic biofilms, and juvenile coastal cutthroat trout size and densities with mixed effects on adult trout and coastal giant salamanders

Wildfire has become increasingly common and severe across forested landscapes. Shortly after wildfire, loss of riparian cover along streams and subsequent increases in light can elevate stream temperatures, a key control on metabolic rates of biota. Increased light can also increase autotrophic basal resource availability with potential bottom-up effects. We evaluated wildfire impacts on aquatic ecosystems in a replicated Before-After Control-Impact study 1 year after a severe wildfire in western Oregon, U.S. Stream temperature, chlorophyll a accrual, and age-0 coastal cutthroat trout size, density, and biomass increased in all three burned streams relative to changes in three unburned references. When streams were evaluated collectively, fire did not have an effect on larger vertebrate density or biomass. However, considering streams individually, two severely burned sites had substantial temperature increases and declines in larger vertebrate density and biomass, but the moderately burned site had modest temperature increases and adult cutthroat trout and Pacific giant salamanders increased. The loss of riparian canopies post-fire increased temperature and algae, but fish responses varied with age class and larger vertebrate responses were inconsistent.

Recovery of a headwater stream population of brown trout after a fish kill in southeastern Minnesota, USA

After a complete fish kill on the 2-km-long, spring-fed headwater section of Garvin Brook, the brown trout (Salmo trutta) population was studied over the next 29 months to examine the relative roles of spawning migration of adults and natural reproduction in the population recovery process. Spawning redd counts during two spawning seasons post-kill, and repeated population surveys in kill and reference zones, were conducted to assess adult and total population changes and shifting age structures. One month after the kill, spawning adult trout were observed in the kill zone. An estimated 100 to 200 adult trout spawned in the kill zone during each of the two spawning seasons after the fish kill, 40% fewer than spawned in the reference reach. Total trout populations were similar between kill and reference zones 12 to 16 months after the kill due to proportionally (80% versus 40 to 60%) larger numbers of young trout spawned within the kill zone, but adult trout remained 4X more abundant within the reference reach than in the kill reach until 25 months after the kill. Age structures still differed between kill and reference zones 29 months after the kill, due to few large adults within the kill reach. Ultimately, natural recovery of the brown trout population in the headwaters of Garvin Brook was accomplished through a combination of spawning migrations of adult fish from downstream unimpacted reaches, reproduction producing large numbers of young fish, and subsequent recruitment of those young fish to the adult age classes.

Copper uptake in adult rainbow trout irradiated during early life stages and in non-irradiated bystander trout which swam with the irradiated fish

Purpose This investigation forms part of a wider study into the legacy effects of exposure of rainbow trout eggs 38 h after fertilization, eyed eggs, yolk sac larvae (YSL) or first feeders to a single 0.5 Gy X-ray dose, including the induction of a bystander effect, by the irradiated fish, to non-irradiated fish. Fish may be exposed to multiple environmental stressors, including waterborne metals, during their lifespan and, while there are data on how the legacy of early life stage irradiation and bystander effect induction is affected by waterborne aluminum and cadmium, there are no studies into the effects radiation or the radiation induced bystander effect on metal uptake. Therefore the aim of this investigation was to determine if the legacy of early life stage irradiation included an effect on copper uptake by adult fish and by non-irradiated bystander adult trout which swam with the irradiated fish. Methods The four early life stages mentioned above were exposed to a single 0.5 Gy X-ray dose and then maintained, for two years with no further irradiation. At two years old the irradiated fish were allowed to swim, for 2 h with non-irradiated bystander trout (also two years old). After this time copper uptake was determined using 64Cu. Results Copper uptake was increased in adult trout irradiated as eggs at 48 h after fertilization and as first feeders but eyed egg or YSL irradiation had no effect. Copper uptake was also increased in the bystander trout which swam with trout irradiated as eggs at 48 h after fertilization and as eyed eggs but there was no effect on non-irradiated adult trout which swam with trout irradiated as YSL or first feeders. Conclusions When put in context with the proteomic changes observed in these fish we propose the increased copper uptake in adult trout irradiated as eggs at 48 h after fertilization could be part of an anti-tumorigenic response and the increase in copper uptake in adult trout irradiated as first feeders could be part of a potentially protective pro-apoptotic response. Similarly we propose the increase in copper uptake in non-irradiated adult trout, induced by trout irradiated as eggs at 48 h after fertilization or as eyed eggs, was part of the universally anti-tumorigenic nature of the X-ray induced bystander effect in fish. However this was exclusive to embryonic irradiation.

Preconditioner influence on twin-screw extrusion cooking of starch-based feed pellets: The example of Fish Feed

This work compares the performance of pellets for adult Trout obtained in two different processing conditions. The first one consists of adopting the traditional Fish Feed process based on a preconditioning steam treatment step before twin-screw extrusion. The second one was a simplified process based only on a twin-extruder ensuring both the cooking and the extrusion of fish pellets in a single step. Six formulations were obtained while maintaining feed specifications (36 % of proteins and 30 % of lipids). The comparison between the two processing methodologies (i.e., with or without preconditioning) was then based on two fundamental aspects. Firstly, the gelatinization rate of starch contained inside pellets was determined. Secondly, the pellet’s characteristics (bulk density, expansion ratio, diameter and pellet’s porosity) and their usage properties (oil leakage rate, durability, hardness and floatability) were evaluated. The present work has evidenced that it is possible to produce pellets without preconditioning while ensuring a total starch gelatinization and maintaining their usage properties. The Fish Feed process has thus been partially simplified.

Molecular Markers of Adult Neurogenesis in the Telencephalon and Tectum of Rainbow Trout, Oncorhynchus mykiss.

In the brain of teleost fish, radial glial cells are the major type of astroglial cells. To answer the question as to how radial glia structures adapt to the continuous growth of the brain, which is characteristic of salmonids, it is necessary to study various types of cells (neuronal precursors, astroglial cells, and cells in a state of neuronal differentiation) in the major integrative centers of the salmon brain (telencephalon and tectum opticum), using rainbow trout, Oncorhynchus mykiss, as a model. A study of the distribution of several molecular markers in the telencephalon and tectum with the identification of neural stem/progenitor cells, neuroblasts, and radial glia was carried out on juvenile (three-year-old) O. mykiss. The presence of all of these cell types provides specific conditions for the adult neurogenesis processes in the trout telencephalon and tectum. The distribution of glutamine synthetase, a molecular marker of neural stem cells, in the trout telencephalon revealed a large population of radial glia (RG) corresponding to adult-type neural stem cells (NSCs). RG dominated the pallial region of the telencephalon, while, in the subpallial region, RG was found in the lateral and ventral zones. In the optic tectum, RG fibers were widespread and localized both in the marginal layer and in the periventricular gray layer. Doublecortin (DC) immunolabeling revealed a large population of neuroblasts formed in the postembryonic period, which is indicative of intense adult neurogenesis in the trout brain. The pallial and subpallial regions of the telencephalon contained numerous DC+ cells and their clusters. In the tectum, DC+ cells were found not only in the stratum griseum periventriculare (SGP) and longitudinal torus (TL) containing proliferating cells, but also in the layers containing differentiated neurons: the central gray layer, the periventricular gray and white layers, and the superficial white layer. A study of the localization patterns of vimentin and nestin in the trout telencephalon and tectum showed the presence of neuroepithelial neural stem cells (eNSCs) and ependymoglial cells in the periventricular matrix zones of the brain. The presence of vimentin and nestin in the functionally heterogeneous cell types of adult trout indicates new functional properties of these proteins and their heterogeneous involvement in intracellular motility and adult neurogenesis. Investigation into the later stages of neuronal development in various regions of the fish brain can substantially elucidate the major mechanisms of adult neurogenesis, but it can also contribute to understanding the patterns of formation of certain brain regions and the involvement of RG in the construction of the definite brain structure.

Detection of pathogenic Aeromonas hydrophila from two rainbow trout (Oncorhynchus mykiss) farms in Peru.

Fish farms are one of the principal food industries located in peri-urban and rural communities that use available resources to ensure the quality of their products. However, trout can suffer from bacterial infections affecting the sector and being a key component of human health risk. We aimed to identify and characterize Enterobacteriaceae in 46 trout (Oncorhynchus mykiss) in two fish farms in Lima, Peru. Adult trouts older than seven weeks (> 200 grams weight) were included. Cultures were performed in duplicate (n=192 trials) with swabs from the squamous surface and visceral cavity. The isolates were identified with the Vitek® 2 Compact system, and the minimum inhibitory concentrations (MIC) were interpreted with the CLSI VET 03-A guide. At El Molino and El Angelito fish farms, 66 (68.8%) and 57 (59.4%) isolates were obtained. The most frequently isolated species were Escherichia coli (56.8%), Proteus sp. (4.2%) and Klebsiella pneumoniae (2.6%). E. coli was present in all sampling areas, and Aeromonas hydrophila was only present in one open viscera sample at El Angelito fish farm. A. hydrophila showed antibiotic resistance to Ampicillin/Sulbactam (≥32 MIC), Oxytetracycline (>8 MIC), Imipenem (8 MIC), Levofloxacin (>8 MIC), and Ceftazidime (≥64 MIC). Our results suggest the presence of multi-resistant A. hydrophila in O. mykiss. Further studies are needed to understand the developmental context of A. hydrophila, which is crucial to the food industry, aquaculture and public health.

Effects of Randomly Fired Underwater Currents as an Occupational Enrichment Program in Rainbow Trout (Oncorhynchus mykiss)

Occupational enrichment (OE) is directed at introducing variations in the tank water so that fish can exercise as they do in the wild. Two trials were carried out to test the effects of randomly fired underwater currents (RFC) on rainbow trout (Oncorhynchus mykiss) maintained in tanks in a recirculation system, using 1226 trout distributed in two independent trials. In Trial 1, fingerling trout (n = 6 tanks, n = 40 fish per tank) were classified into two groups based on low (13%) or high (30%) coefficient of variation in live weight (CV), and exposed to RFC or no currents (controls). In Trial 2, adult trout (n = 12 tanks, n = 20 fish per tank) were either exposed to RFC or to a constant current (controls) from two submerged pumps. Both trials lasted four weeks. No significant differences in growth were observed between treatments in either trial. In Trial 1, RFC fish maintained a similar CV throughout the trial, while CV decreased in controls. Also, in Trial 1, plasma cortisol levels were higher and creatine phosphokinase (CPK) levels lower in tanks with a low initial CV. In Trial 2, the CV was lower in RFC trout, where cortisol levels were also significantly lower and triglycerides significantly higher. The results suggest that OE using RFC can have positive effects by helping to reduce stress levels, and provides fish with biologically meaningful environmental enrichment related to the natural history of the species.

Multi-Parametric Portfolio to Assess the Fitness and Gonadal Maturation in Four Key Reproductive Phases of Brown Trout

Simple SummaryBrown trout is a freshwater fish with economic importance and with a great potential to be used as an environmental biosensor species. Despite being selected as a model species in distinct scientific contexts, in cultured specimens, there is a surprising lack of works investigating the morpho-physiological changes associated with the reproductive cycle; particularly concerning the gonads. In this study, a multi-parameter portfolio of biometric, biochemical, hormonal, and morphological analysis was established, which allowed a seasonal and sex characterization of the gonad status of adult brown trout males and females. Sampling included four reproductive phases: spawning capable (December), regressing (March), regenerating (July), and developing (November). Sex- and season-specific changes were described. The discriminative parameters characterized here stand now as normal baseline values against which abnormal patterns can be compared with. These parameters have the potential to be used as tools for the environmental monitoring of the reproductive status of wild populations and for the control of breeding stocks in aquaculture.Brown trout is an environmental freshwater sentinel species and is economically important for recreational fishing and aquaculture. Despite that, there is limited knowledge regarding morpho-physiological variations in adults throughout the reproductive cycle. Thus, this study aimed to analyze the fitness and gonadal maturation of cultured adult brown trout in four reproductive phases (spawning capable—December, regressing—March, regenerating—July, and developing—November). The systematic evaluation of males and females was based on biometric, biochemical, and hormonal parameters, along with a histomorphological grading of gonads and the immunophenotype location of key steroidogenic enzymes. The total weight and lengths reached the lowest levels in December. Gonad weights were higher in December and November, while the opposite pattern was found for liver weights. The lowest levels of cholesterol and total protein were also noted during those stages. The 11-ketotestosterone (11-KT) and testosterone (T) for males, and estradiol (E2) and T for females, mostly explained the hormonal variations. The immunohistochemistry of cytochrome P450c17 (CYP17-I), aromatase (CYP19), and 17β-hydroxysteroid dehydrogenase (17β-HSD) showed sex and site-specific patterns in the distinct reproductive phases. The sex- and season-specific changes generated discriminative multi-parameter profiles, serving as a tool for environmental and aquaculture surveys.

Identification and molecular characterization of oomycete isolates from trout farms in Croatia, and their upstream and downstream water environments

Oomycetes from the genus Saprolegnia are opportunistic pathogens that cause significant losses in salmonid aquaculture. Despite this, studies reporting dominant Saprolegnia species in different fish farming facilities, as well as analyses of their spreading to natural environments, are still scarce. In this study, we have for the first time identified oomycete species present in four different trout farms in Croatia. We have collected 220 oomycete isolates, both from affected tissue (46 in total: adult trout - 28, eggs - 13, and alevins - 5) and from water (174 in total: in the fish farm – 78, upstream – 50, and downstream - 46). We have used Bayesian inference to reconstruct phylogenetic relationship among the internal transcribed spacer (ITS) sequences of the collected isolates and referent strains, and determined that the isolates belonged to three different oomycete genera: Saprolegnia (64% of isolates), Pythium (35%), and Leptolegnia (1%). Saprolegnia isolates were classified into four species: S. parasitica with 53 isolates, S. australis - 52, S. delica – 25, and S. ferax – 11. Pythium and Leptolegnia isolates couldn't be identified to the species level and probably belong to so far undescribed species since their sequences didn't group with previously described species. Next, isolates from the affected tissue were mostly S. parasitica (32), while S. australis, S. delica, and S. ferax were less common (≤ 4 isolates per species). Furthermore, we used hempseed baits to capture oomycetes from water and positioned them inside the fish farms, as well as upstream (between 55 and 155 m) and downstream (between 95 and 140 m) of the fish farms. According to correspondence analysis, Saprolegnia species showed a strong association with fish farms and downstream locations, while upstream locations were associated with Pythium species, highlighting a possible role of trout farms as a source of spreading Saprolegnia species into the environment.

The role of migration barriers for dispersion of Proliferative Kidney Disease—Balance between disease emergence and habitat connectivity

Natural and uninterrupted water courses are important for biodiversity and fish population stability. Nowadays, many streams and rivers are obstructed by artificial migration barriers, often preventing the migration of fish. On the other hand, distribution of pathogens by migrating fishes is still a point of concern. Pathogen transport and transmission is a driving force in the dynamics of many infectious diseases. The aim of the study was to investigate the possible consequences of the removal of an artificial migration barrier for the upstream transport of Tetracapsuloides bryosalmonae, the causative agent of Proliferative Kidney Disease (PKD) in brown trout, by migrating fish. To test this question, a river system was selected with a migration barrier separating a PKD positive river from a PKD negative tributary. After removal of the barrier, PKD prevalence and pathology was examined during five years after elimination of the barrier. In the tributary, no PKD was recorded at any time of the survey. By means of unidirectional PIT (passive integrated transponder)-tagging, we confirmed upstream migration of adult brown trout into the tributary during the cold season, presumably for spawning. By eDNA, we confirmed presence of T. bryoalmonae and Fredericella sp., the definitive host, DNA in water from the PKD positive river stretch, but not in the PKD negative tributary. Our study illustrates the importance of the connectivity of streams for habitat maintenance. Although migration of brown trout from a PKD-positive river into a PKD-negative tributary, mainly for spawning, was confirmed, upstream spreading of PKD was not observed.

All Fish, All the Time: A Good General Objective for Fish Passage Projects?

Better understanding of the degree of “passability” needed to sustain robust sub‐populations upstream of barriers could help address and perhaps eliminate perceived trade‐offs between fish passage and other resource management goals. We used spatially explicit, individual‐based modeling to explore the population‐level consequences of various levels of upstream passability by (1) adult resident trout, and (2) juvenile salmon. In simulations of a stream network with widespread barriers, adult trout allowed to move upstream during only the highest 4% of streamflows sustained the distribution and abundance of the population to the same extent as in a no‐barrier scenario. In simulations of salmon production in a reach fully accessible to spawning adults, the number of barriers to upstream movement by juvenile salmon did not affect the production of large outmigrants. Passage objectives less ambitious than “all the fish, all the time” may sometimes suffice to maintain populations of resident trout and anadromous salmon.

Straying of brown trout in the catchment of a large New Zealand river evaluated by otolith microchemistry

AbstractNatal homing and straying are behavioural tactics of migratory animals that return to nursery habitats to breed as adults. Straying has evolutionary and ecological importance for species flexibility, interpopulation connectivity and success of invasive species in new environments. This study aimed to estimate the relative importance of straying and homing in introduced brown trout Salmo trutta spawning in a model coastal tributary (Silverstream) of a large New Zealand river using otolith microchemistry. The data on natal homing and straying are important for the understanding of the ecological resilience of salmonid populations and metapopulations, and the development of effective management measures at stream or catchment scales. To examine brown trout homing and straying in a river catchment, otolith microchemical analysis was applied. We used linear discriminant function analysis to compare the trace element composition in the otoliths of YoY (young‐of‐the‐year) trout collected at spawning streams across the catchment and adult trout reproducing in Silverstream. The results showed that only six from a sample of 30 spawning adults in Silverstream originated from Silverstream. Another 14 fish likely originated from other Taieri tributaries further upstream, but the origin of the remaining 10 could not be determined. Contrary to published studies based on wild populations of brown trout in Europe, and several other species of salmonids, a large proportion of brown trout spawners collected in Silverstream were strays. The large number of strayers identified in Silverstream may be a consequence of the geomorphology of the Taieri catchment and highlights the adaptability of brown trout to different environmental contexts.

Comparison of Underwater Video with Electrofishing and Dive Counts for Stream Fish Abundance Estimation

AbstractAdvances in video technology enable new strategies for stream fish research. We compared juvenile (age‐0) and adult (age‐1 and older) Brook Trout Salvelinus fontinalis abundance estimates from underwater video with those from backpack electrofishing and dive count methods across a series of stream pools in Shenandoah National Park, Virginia (n = 41). Video methods estimated greater mean abundance of adult trout than did one‐pass electrofishing, but video estimates of adult abundance were not different than estimates from three‐pass electrofishing or dive count methods. In contrast, videos underestimated the abundance of juvenile trout; we suggest that this is because predator avoidance behaviors by juvenile trout limit their use of microhabitat locations visible to cameras. Integrated abundance estimates from two cameras increased correspondence to comparison methods relative to estimates from single cameras, demonstrating the importance of an expanded field of view for video sampling in streams. Geomorphic features helped to explain methodwise differences: more adult Brook Trout were estimated with video than with three‐pass electrofishing as riffle crest depth and boulder composition increased, indicating habitat associations with trout escapement from electrofishing. Our results demonstrated that video techniques can provide a robust alternative or supplement to traditional methods for estimating adult trout abundance in stream pools.