The Acoculco Caldera Complex is considered a promissory hidden high-temperature geothermal system in Mexico. To support the geothermal prospection of this anomalous area, a comprehensive programme of soil CO2 flux measurements was performed. A long-term measurement programme was conducted to determine the baseline of natural soil CO2 effluxes. Significant efforts were devoted both to measuring the CO2 fluxes between 2015 and 2022 and interpreting their origin. Eighteen soil gas surveys of CO2 were carried out by using the accumulation chamber method. >1200 diffuse CO2 fluxes were measured in six different areas of the Acoculco Caldera. Two areas (Los Azufres and Alcaparrosa) exhibited cold degassing sites, acid-sulphate springs, and gas bubbling in surface water bodies. The soil CO2 fluxes ranged from 1 to 26,000 g m−2 d−1, whereas lower fluxes <29 g m−2 d−1 were determined as the degassing baseline. A total CO2 output of 492 t d−1 km−1 was estimated using an integrated SGS-GSA approach, where the highest total soil CO2 fluxes were obtained for Alcaparrosa (299 t d−1 km−2) compared with Los Azufres (164 t d−1 km−2), and Surroundings (29 t d−1 km−2). Such results agree well with those values measured in other worldwide volcanic and active geothermal ecosystems. The range of CO2 isotopic composition values from −28.83 ‰ to −3.11 ‰, together with their statistical distribution, suggests multiple CO2 production sources feeding soil degassing. The combined interpretation of flux and isotopic data allowed us to identify two distinct gas sources: endogenous and biogenic. The present study highlights the importance of using soil CO2 monitoring to determine baseline emissions at the early exploration stage of geothermal systems.
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