Acid-producing Bacteria Research Articles

Prevention of Caries and Dental Erosion by Fluorides-A Critical Discussion Based on Physico-Chemical Data and Principles.

Dental erosion is a common problem in dentistry. It is defined as the loss of tooth mineral by the attack of acids that do not result from caries. From a physico-chemical point of view, the nature of the corroding acids only plays a minor role. A protective effect of fluorides, to prevent caries and dental erosion, is frequently claimed in the literature. The proposed modes of action of fluorides include, for example, the formation of an acid-resistant fluoride-rich surface layer and a fluoride-induced surface hardening of the tooth surface. We performed a comprehensive literature study on the available data on the interaction between fluoride and tooth surfaces (e.g., by toothpastes or mouthwashes). These data are discussed in the light of general chemical considerations on fluoride incorporation and the acid solubility of teeth. The analytical techniques available to address this question are presented and discussed with respect to their capabilities. In summary, the amount of fluoride that is incorporated into teeth is very low (a few µg mm−2), and is unlikely to protect a tooth against an attack by acids, be it from acidic agents (erosion) or from acid-producing cariogenic bacteria.

Effects of lactic acid-producing bacteria as direct-fed microbials on the ruminal microbiome

The objective of this study was to evaluate ruminal microbiome changes associated with feeding Lactobacillus plantarum GB-LP1 as direct-fed microbials (DFM) in high-producing dairy cow diets. A dual-flow continuous culture system was used in a replicated 4 × 4 Latin square design. A basal diet was formulated to meet the requirements of a cow producing 45 kg of milk per day (16% crude protein and 28% starch). There were 4 experimental treatments: the basal diet without any DFM (CTRL); a mixture of Lactobacillus acidophilus, 1 × 109 cfu/g, and Propionibacterium freudenreichii, 2 × 109 cfu/g [MLP = 0.01% of diet dry matter (DM)]; and 2 different levels of L. plantarum, 1.35 × 109 cfu/g (L1 = 0.05% and L2 = 0.10% of diet DM). Bacterial samples were collected from the fluid and particulate effluents before feeding and at 2, 4, 6, and 8 h after feeding; a composite of all time points was made for each fermentor within their respective fractionations. Bacterial community composition was analyzed through sequencing the V4 region of the 16S rRNA gene using the Illumina MiSeq platform. Sequenced data were analyzed on DADA2, and statistical analyses were performed in R (RStudio 3.0.1, https://www.r-project.org/) and SAS 9.4 (SAS Institute Inc.); orthogonal contrasts were used to compare treatments. Different than in other fermentation scenarios (e.g., silage or beef cattle high-grain diets), treatments did not affect pH or lactic acid concentration. Effects were mainly from overall DFM inclusion, and they were mostly observed in the fluid phase. The relative abundance of the phylum Firmicutes, family Lachnospiraceae, and 6 genera decreased with DFM inclusion, with emphasis on Butyrivibrio_2, Saccharofermentans, and Ruminococcus_1 that are fibrolytic and may display peptidase activity during fermentation. Lachnospiraceae_AC2044_group and Lachnospiraceae_XPB1014_group also decreased in the fluid phase, and their relative abundances were positively correlated with NH3-N daily outflow from the fermentors. Specific effects of MLP and L. plantarum were mostly in specific bacteria associated with proteolytic and fibrolytic functions in the rumen. These findings help to explain why, in the previous results from this study, DFM inclusion decreased NH3-N concentration without altering pH and lactic acid concentration.

Impact of Dietary Sodium Butyrate and Salinomycin on Performance and Intestinal Microbiota in a Broiler Gut Leakage Model.

Simple SummaryImbalanced microbiota related to intestinal leakage is an emerging health problem in commercial broilers associated with partial loss of gut function and reduction in growth performance. Salinomycin is an ionophore coccidiostat with antibiotic effect, which is used as additive in broiler diets to control enteric diseases and improve performance. Due to the growing concern of the development of bacterial antibiotic resistance, ionophores are expected to be banned, within the EU, as feed additives in the near future. Butyrate with multiple beneficial effects on growth performance and pathogen control in broilers has been introduced as a promising alternative. In this study, the ability of a coated butyrate product to alleviate intestinal imbalance was compared to that of salinomycin after enteric challenge. Compared to butyrate and non-supplemented control, salinomycin increased potentially beneficial Ruminococcaceae and reduced potentially pathogenic Enterobacteriaceae, and counts of Lactobacillus salivarius and Clostridium perfringens. Further, salinomycin improved broiler performance. Dietary inclusion of coated butyrate had only limited effects on the composition of the broiler microbiota. Whether improved growth and feed utilization in the salinomycin-supplemented animals can be explained by suppression of C. perfringens and L. salivarius and enrichment of butyrate- and lactic acid-producing bacteria (Ruminococcaceae and Lactobacillaceae) needs further verification.Unfavorable alterations of the commensal gut microbiota and dysbacteriosis is a major health problem in the poultry industry. Understanding how dietary intervention alters the microbial ecology of broiler chickens is important for prevention strategies. A trial was conducted with 672 Ross 308 day-old male broilers fed a basic diet (no additives, control) or the basic diet supplemented with 500 mg/kg encapsulated butyrate or 68 mg/kg salinomycin. Enteric challenge was induced by inclusion of 50 g/kg rye in a grower diet and oral gavage of a 10 times overdose of a vaccine against coccidiosis. Compared to control and butyrate-supplemented birds, salinomycin supplementation alleviated growth depression. Compared to butyrate and non-supplemented control, salinomycin increased potentially beneficial Ruminococcaceae and reduced potentially pathogenic Enterobacteriaceae and counts of Lactobacillus salivarius and Clostridium perfringens. Further, salinomycin supplementation was accompanied by a pH decrease and succinic acid increase in ceca, while coated butyrate (0.5 g/kg) showed no or limited effects. Salinomycin alleviated growth depression and maintained intestinal homeostasis in the challenged broilers, while butyrate in the tested concentration showed limited effects. Thus, further investigations are required to identify optimal dietary inclusion rates for butyrate used as alternative to ionophore coccidiostats in broiler production.

A Tetragenococcus halophilus human gut isolate

Tetragenococcus halophilus (T. halophilus) is a facultative anaerobic, coccus-shaped halophilic lactic acid-producing bacterium previously detected and cultured in various salty foods and credited for beneficial effects on human health. In this study, we investigated the presence of T. halophilus in human samples using a polyphasic approach including scanning electron microscopy, molecular biology methods and microbial culture. This unique investigation yielded the unprecedented presence of T. halophilus in human feces samples, thus enriching the repertoire of halophilic microorganisms colonizing the human gastrointestinal tract with the isolation and culture of T. halophilus for the first time in humans. Using the E-test strips, the MIC was assessed for T. halophilus strain CSURQ6002: rifampicin (MIC at 0.002 μg/mL), benzylpenicillin (MIC at 0.094 μg/mL), amoxicillin (MIC at 0.5 μg/mL), erythromycin (MIC at 2 μg/mL), clindamycin (MIC at 4 μg/mL), and vancomycin (MIC at 8 μg/mL). However, this strain showed a MIC up to 256 μg/mL for ciprofloxacin, fosfomycin, doxycyclin, imipenem, and colistin. In-silico profiling derived from whole genome sequencing (NCBI accession number: PRJNA780809), was confirmed. This discovery suggested that T. halophilus was part of the human digestive microbiota and that its potential role on human health should be considered.

Current Status of Fish Health and Immunity

The immune system is responsible for allowing humans to survive in an environment replete with potentially pathogenic microorganisms, many of them living on or within our bodies. The influence of nutrition and metabolism on immune function is a topic of rising interest, to the point that the new discipline of “immunometabolism” has arisen in order to foster a deep comprehension of this crucial relationship. Fish as a food is rich in compounds with immunoregulatory properties, among them omega-3 fatty acids, melatonin, tryptophan, taurine and polyamines. In addition, regular fish consumption favours the proliferation of beneficial members of the intestinal microbiota, like short-chain fatty acid-producing bacteria. Global aquaculture production has increased in recent years and it is predicted that aquaculture will provide the most reliable supply of seafood in the future. However, there are many controversial issues in aquaculture regarding food safety, nutrition, and sustainability; many of which are directly related to the nutrition and feeds for farmed fish. These nutrition-related issues must be considered in order to achieve balance in safe and nutritious food production and sustainability in aquaculture.

Bacillus subtilis-Fermented Products Ameliorate the Growth Performance, Alleviate Intestinal Inflammatory Gene Expression, and Modulate Cecal Microbiota Community in Broilers during the Starter Phase under Dextran Sulfate Sodium Challenge.

The aim of this study was to evaluate the effects of B. subtilis-fermented products (BSFP) on growth performance, intestinal inflammatory gene expression, and cecal microbiota community in broilers challenged with dextran sulfate sodium (DSS) in a 14-day experiment. A total of 32, 1-day-old male broiler chickens (Ross 308), were randomly divided into four groups of eight birds per group and reared individually (n=8). The treatments consisted of a control diet without supplementation and DSS challenge, control diet plus 1.5% DSS, control diet plus 1 g/kg BSFP in combination with 1.5% DSS, and control diet plus 3 g/kg of BSFP in combination with 1.5% DSS. The results showed that BSFP supplementation (1 and 3 g/kg) partially improved body weight and average daily gain in broilers under DSS challenge. Relative to DSS treatment alone, BSFP supplementation dose-dependently increased the body weight of broilers at 7 days of age, with the average daily gain being at 1 to 7 days of age. BSFP supplementation (1 and 3 g/kg) alleviated intestinal inflammatory gene expression in broilers under DSS challenge. The richness and evenness of bacterial species in cecal digesta increased in a dose-dependent manner in the groups treated with BSFP (1 and 3 g/kg) in combination with DSS challenge, compared with the control group. Unweighted principal coordinate analysis indicated distinct clusters separating the group treated with 3 g/kg of BSFP in combination with DSS challenge from the other three groups. The abundance of short-chain fatty acid-producing bacteria (genus Ruminococcaceae_unclassified) increased and that of mucindegrading bacteria (genus Ruminococcus torques group) decreased in the cecal digesta of broilers fed 3 g/kg of BSFP, compared with the control group. In conclusion, BSFP supplementation dose-dependently improved growth performance, reduced gut inflammation, and regulated the cecal microbiota of broilers exposed to DSS challenge during the starter phase.

Isolation and Characterization of a New Superior Lactobionic Acid-Producing Bacterium, Enterobacter cloacae KRICT-1, from Environmental Soil Samples

Lactobionic acid (LBA) is a specialty aldonic acid that has been broadly employed in various industries, including food, cosmetics, and pharmaceuticals. In this study, we isolated a new excellent LBA-producing bacterium from soil, designated as strain KRICT-1. A phylogenetic analysis revealed that this strain was identified as Enterobacter cloacae. Previously, we successfully produced LBA using Pseudomonas taetrolens, an excellent LBA-producing bacterium. In a flask culture at 30 °C, E. cloacae KRICT-1 showed the same LBA production concentration (209.3 g/L) and yield (100%) from 200 g/L lactose, compared with those obtained from P. taetrolens cultivated at 25 °C, the growth temperature of which showed the highest LBA production ability. E. cloacae KRICT-1 exhibited an approximately 1.08-fold higher LBA productivity (8.37 g/L/h) than that (7.75 g/L/h) of P. taetrolens, indicating that E. cloacae KRICT-1 was a more efficient LBA-producing bacterium than P. taetrolens. The LBA productivity of E. cloacae KRICT-1 further improved to 8.72 g/L/h at 35 °C. Furthermore, the LBA productivity (9.97 g/L/h) improved at 35 °C in a 5 L fermenter. After whole-genome sequencing of E. cloacae KRICT-1, we found that two quinoprotein glucose dehydrogenases (GDH1 and GDH2) from this strain could produce LBA from lactose by recombinantly expressing these genes in Escherichia coli. Our present results clearly demonstrated that E. cloacae KRICT-1 can be a new promising host for the industrial production of LBA.

Intermittent pH control strategy in sludge anaerobic fermentation: Higher short-chain fatty acids production, lower alkali consumption, and simpler control

The pH control to promote short-chain fatty acids (SCFAs) production during anaerobic alkaline fermentation basically focused on constant pH control. In this study, a simple and consumption-reducing intermittent pH control strategy at moderate temperature (23 ± 2 °C) was investigated with adjusting pH to 10 when naturally reduced to 8. The intermittent pH control strategy could alleviate the inhibition of acid-producing bacteria by strong alkaline and high FA concentration. Meanwhile, microbial diversity promoted by 6% and 69% while the relative abundance of acid-producing bacteria increased by 36% and 61% compared to blank and constant pH fermenters. The relative genes abundance related to amino acid metabolism and fatty acid production were mostly promoted and led to enhanced SCFAs production. In the long-term fermenter, the intermittent pH control strategy could result in a 68% reduction in alkali consumption and a 37% increase in SCFAs production compared to that of the constant pH at 10.

The combination of aerobic digestion and bioleaching for heavy metal removal from excess sludge

In this study, bioleaching is employed for removing heavy metals from excess sludge generated during municipal wastewater treatment. To avoid organic matter impact on bioleaching, aerobic digestion was performed as pretreatment of the bioleaching or accompanied with the bioleaching. The results showed that the leaching amounts of heavy metals from the process of aerobic digestion accompanied with bioleaching was 2.3 times more than that of the process of aerobic digestion followed by bioleaching. The stable-state proportions of Zn, Cu, Ni and Mn increased by 83%, 94%, 96% and 91%, respectively, in the process of aerobic digestion accompanied with bioleaching, and moreover, the reduction rate of MLSS increased by 22.7%. Although the content of ammonia nitrogen and total phosphorus in sludge decreased after bioleaching treatment, they were still much higher than the soil background value. It indicates that the treated sludge still has agricultural value. High throughput sequencing analysis showed that the relative abundance of acid-producing bacteria (Romboutsia, Clostridium, Tricibacter, and Intestinibacter) significantly increased from 0% to 28.6%, 6.9%, 3.9%, and 2.4%. The enrichment of these acidogenic bacteria was the main reason for the pH decrease, which was conducive to the removal of heavy metals from sludge.

Gracilibacillus suaedae sp. nov., an indole acetic acid-producing endophyte isolated from a root of Suaeda salsa.

A Gram-stain-positive, facultatively anaerobic, spore-forming, motile with unipolar biflagella, rod-shaped, indole acetic acid-producing bacterium, named LD4P30T, was isolated from a root of Suaeda salsa collected in Inner Mongolia, northern China. Strain LD4P30T grew at pH 6.0-11.0 (optimum, pH 7.0), 10-40 °C (35 °C) and in the presence of 1-15% (w/v) NaCl (5%). The strain was positive for oxidase and negative for catalase. The major cellular fatty acids of strain LD4P30T were iso-C15:0, C15:1 ω5c and anteiso-C15:0; the major polar lipids were diphosphatidylglycerol and phosphatidylglycerol; and menaquinone-7 was the only respiratory quinone. The genomic DNA G+C content was 36.7 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain LD4P30T clustered with Gracilibacillus thailandensis TP2-8T, Gracilibacillus saliphilus YIM 91119T and Gracilibacillus lacisalsi BH312T, and showed 99.0, 98.9, 98.0 and <97.7% 16S rRNA gene similarity to G. thailandensis TP2-8T, G. saliphilus YIM 91119T, G. lacisalsi BH312T and all other current type strains, respectively. The digital DNA-DNA hybridization and average nucleotide identity based on blast values between strain LD4P30T and G. saliphilus YIM 91119T, G. thailandensis TP2-8T and G. lacisalsi BH312T were 44.9, 44.7 and 44.4%, and 91.1, 91.0 and 90.8%, respectively. Based on its phenotypic, physiological and phylogenetic characteristics, strain LD4P30T represents a novel species, for which the name Gracilibacillus suaedae is proposed. The type strain is LD4P30T (=CGMCC 1.17697T=KCTC 82375T).

Anaerobic granular sludge coupled with artificial aeration or Fe-based substrate enhanced nitrogen conversion dynamic based on CW-MFCs

Nitrogen conversion, e.g. ammonification, nitrification, and denitrification, efficiency in constructed wetlands (CWs) was constrained by the lack of microbial biomass, electron acceptor, and supplemental electron transfer pathway due to its configuration defects. High density sludge inoculation, electron acceptor enrichment, and electron transfer intensification can respectively enhance the conversion efficiencies of different nitrogen forms in CWs. Thus, three approaches including anaerobic granular sludge (AGS) coupled with artificial aeration (R1) or Fe rich substrates (R2: Fe-C; R3: FeS) based on CW-microbial fuel cells (CW-MFCs) were explored to enhance nitrogen conversion dynamic. Results showed that the ammonification, nitrification, and denitrification efficiencies (Org-N loading rates: 2.1–4.4 g N/(m2·d)) of three reactors could reach 89%, 34–80%, and 90%, respectively. Interactions of acetoclastic methanogens (Methanosaeta) and acid-producing bacteria (Trichococcus) play an important role in the conversion of Org-N to NH3-N. Typical electricity-generating bacteria, such as Trichococcus, Clostridium, Rhodobacter, and Geobacter, enriched in anodic zone, especially for R2–3, which availed for Feammox process during the conversion of NH3-N to NO2-N and NO3-N. Stable bioenergy output could act as a supplementary for electrochemical denitrification, inducing an approximately complete denitrification in CWs. In addition, CW-MFC associated with AGS exhibit a favorable organic degradation efficiency (68–90%) under the organic loading rates of 36–78 g COD/(m2·d). These findings indicated that AGS coupled with artificial aeration or Fe-based substrates are promising technologies for promoting nitrogen conversion dynamic and achieving sustainably nitrogenous wastewater treatment based on CW-MFCs.

Lactobacillus rhamnosus Strain LRH05 Intervention Ameliorated Body Weight Gain and Adipose Inflammation via Modulating the Gut Microbiota in High-Fat Diet-Induced Obese Mice.

This study aims to investigate the underlying mechanism of a specific probiotic strain on suppression of adipogenesis and inflammatory response in white adipose tissue (WAT) of high-fat diet (HFD)-fed mice. Eight strains are screened in vitro for candidates of potential probiotics. Lactobacillus rhamnosus LRH05 (LRH05) and Lactobacillus reuteri LR47 (LR47) are screened out with lower triglyceride expression in vitro. The mice are fed a control diet (CD), HFD, or HFD supplemented with a dose of LRH05 or LR47 at 109 CFU per mouse per day for 10 weeks (n = 8), respectively. The results demonstrate that LRH05, but not LR47, significantly reduce body weight gain and the weight of WAT, as well as improve hepatic steatosis and glucose intolerance. LRH05 regulates the Mogat1, Igf-1, Mcp-1, and F4/80 mRNA expression and decreases macrophage infiltration in WAT. LRH05 shows an increase in butyric and propionic acid-producing bacteria, including Lachnoclostridium, Romboutsia, and Fusobacterium that is coincident with the increased fecal propionic acid and butyric acid levels. LRH05 shows a strain-specific effect on ameliorating the pro-inflammatory process by reducing inflammatory macrophage infiltration and the expression of inflammation-related genes in mice. Thus, LRH05 can be considered a potential probiotic strain to prevent obesity.

Antibacterial and phytotoxic activity of the Schiff’s bases of 5-phenyl-4-amino-3-mercapto-4H-1,2,4-triazole with the donor substituents in the 4th position on heterosystem

Background. Triazoles and Schiff’s bases have a high biological activity. For the practical use of the derivatives, their low toxicity is important. The purpose of this work was to investigate the antibacterial and phytotoxic properties of Schiff’s bases of 5-phenyl-4-amino-3-mercapto-4H-1,2,4-triazole with donor substituents in the 4th position of heterosystem. Materials and methods. In the study of antibacterial activity of the derivatives, corrosion-active 4-day association cultures of ammonifying and sulfate-reducing bacteria were used as a test culture of microorganisms. Sensitivity of bacteria to derivatives was determined by diffusion method in agar using sterile paper disks according to the standard method. In the investigation of phytotoxic activity of the derivatives, Lepidium sativum of the “Ajour” cultivar was used as a test plant. Seed germination and biometric indices (length, weight of the aboveground part and roots) of 5-day sprouts were determined, the phytotoxic effect of the derivatives was calculated. Experimental data were processed using methods of mathematical statistics. Results. The introduction of substituents does not provide for an increase in antibacterial properties of the studied compounds in relation to some corrosion active ammonifying and sulfate-reducing bacteria. Low activity was observed regarding the association culture of ammonifying bacteria to the compound without substituents in the phenyl fragment and the compound with fluor as a substituent in the phenyl fragment at a concentration of 2.0%. Derivatives with the methoxyl substituent in the phenyl fragment and with the hydroxyl substituent in the phenyl fragment did not show any antibacterial activity against the association culture of ammonifying bacteria isolated from ferrosphere in meat-peptone broth. Antibacterial action against the association of sulfate-reducing bacteria Desulfovibrio orizae with organic acid-producing bacteria Anaerotignum propionicum for derivatives were not detected. Phytotoxic properties were observed for the compound with the hydroxyl substituent that influenced the processes of growth in the test plant. Conclusion. The introduction of electron-donor substituents into the basic structure did not provide for an increase in antibacterial properties against corrosive bacteria. Phytotoxic properties were observed for the compound with the hydroxyl substituent in the phenyl fragment, which influenced the L. sativum growth processes by inhibiting growth of the above-ground part and roots. Other compounds either did not show any action, or demonstrated a weak stimulating effect on the growth and development of the test plant.

Impacts of Metformin on Local Ovarian Cell Tissue of Rats with Polycystic Ovary Syndrome and Intestinal Flora Under Aerobic Exercise

In order to explore the possible treatment mechanism of metformin on the local ovarian cell tissue of rats with polycystic ovary syndrome (PCOS), 35 female clean sterile rats were selected as the research objects in this study, and randomly divided a PCOS model group (PCOS MG) (25 rats) and a control group (CG) (10 rats). After the modelling was completed, 5 rats were randomly selected to evaluate the modelling effect. When the success rate was higher than 80%, the remaining model rats were divided into two groups randomly, namely the (PCOS MG) (10 rats) and the treatment group (TG) (10 rats). Hematoxylin-eosin (HE) staining was performed on ovarian tissue of the rat, and the ovarian tissue structure was observed under light microscope. Immunohistochemistry was used to detect the distribution and expression levels of tumour necrosis factor-α (TNF-α), insulin-like growth factor-I (IGF-I), and connective tissue growth factor (CTGF) on the ovaries of rats in each group. It was found by observing the vaginal smear under the microscope that the rats in the (PCOS MG) had lost the regular estrous cycle, suggesting that there was no ovulation. The expression levels of TNF-α and CTGF in rats in the (PCOS MG) were greatly higher than those in the CG (P &lt; 0.05); compared with the (PCOS MG), the expression levels of TNF-α and CTGF in the TG were decreased observably (P &lt; 0.05). IGF-I was mainly expressed in granulosa cells (GCs) and follicular membrane cells (FMCs) of the ovarian tissue. The expression level of IGF-I in ovarian GCs in rats in the (PCOS MG) was significantly higher than that in the CG (P &lt; 0.05). The expression level of IGF-I in GCs in the TG was lower significantly than that in the (PCOS MG) (P &lt; 0.05). By comparing with rats in the CG, the rats in the (PCOS MG) had obviously decreased Actinobacteria and Betaproteobacteria in the intestinal tract, and the proportion of Firmicutes in the intestine was significantly increased; the amount of butyric acid in the faeces of rats with aerobic exercise was obviously higher than that in the (PCOS MG), because exercise increased the proportion of intestinal butyric acid-producing bacteria. Conclusion: metformin combined with aerobic exercise can treat the PCOS by regulating serum hormone levels and the expression levels of TNF-α, IGF-I, and CTGF.

Incorporation of vegetables in yoghurt as a source of dietary fibre: A review

Yoghurt is a fermented dairy product with conspicuous consumption around the world due to its pronounced health benefits. Yoghurt is defined as the food produced by culturing the milk in controlled conditions that contain lactic acid-producing bacteria (Lactobacillus bulgaricus, Streptococcus thermophilus. Consumer acceptability of Yoghurt is high due to its health benefits and sensory attributes. It provides 40% calcium and 30-45% phosphorus of daily requirement. All essential amino acids (proline and glycine) are present in Yoghurt. The biological value of milk proteins present in Yoghurt is high. It is considered a rich source of high-quality protein. Health benefits associated with Yoghurt are to improve the gastrointestinal digestion and immune system of humans. Yoghurt is enriched with proteins, carbohydrates, minerals (calcium and phosphorus), and vitamins (vitamin A, thiamine, riboflavin, niacin, folate and cobalamin). Yoghurt protein and its peptides have many physiological impacts as well as nutritional value. The only deficiency in Yoghurt is a lack of dietary fibre. The review emphasizes the addition of dietary fibre in Yoghurt to boost up its health benefits.

The impact of bacterial diversity on resistance to biocides in oilfields

Extreme conditions and the availability of determinate substrates in oil fields promote the growth of a specific microbiome. Sulfate-reducing bacteria (SRB) and acid-producing bacteria (APB) are usually found in these places and can harm important processes due to increases in corrosion rates, biofouling and reservoir biosouring. Biocides such as glutaraldehyde, dibromo-nitrilopropionamide (DBNPA), tetrakis (hydroxymethyl) phosphonium sulfate (THPS) and alkyl dimethyl benzyl ammonium chloride (ADBAC) are commonly used in oil fields to mitigate uncontrolled microbial growth. The aim of this work was to evaluate the differences among microbiome compositions and their resistance to standard biocides in four different Brazilian produced water samples, two from a Southeast Brazil offshore oil field and two from different Northeast Brazil onshore oil fields. Microbiome evaluations were carried out through 16S rRNA amplicon sequencing. To evaluate the biocidal resistance, the Minimum Inhibitory Concentration (MIC) of the standard biocides were analyzed using enriched consortia of SRB and APB from the produced water samples. The data showed important differences in terms of taxonomy but similar functional characterization, indicating the high diversity of the microbiomes. The APB and SRB consortia demonstrated varying resistance levels against the biocides. These results will help to customize biocidal treatments in oil fields.

Analysis of the relationship between bile duct and duodenal microbiota reveals that potential dysbacteriosis is the main cause of primary common bile duct stones

Bacteria play an important role in the formation of primary Common Bile Duct (CBD) stones. However, the composition and function of the microbiota of bile duct in patients with primary CBD stones remained to be explored. We utilized the 16S rRNA gene high-throughput sequencing technology to analyze the microbial diversity and community composition of biliary and duodenal microbiota in 15 patients with primary CBD stones and 4 patients without biliary tract diseases. Alpha diversity analysis showed that the microbiota richness was similar in bile and intestinal fluid; Beta diversity analysis showed that there were differences in the composition between biliary microbiota and the duodenal microbiota, but the abundance of the main groups showed similarities. The composition of the biliary microbiota from gallstone patients was more complex, as was the duodenal microbiota. Proteobacteria and Firmicutes were the dominant bacteria at phylum level, accounting for at least 75% of the total reads in each subgroup. Pseudomonas and Escherichia−Shigella were the major genus among subgroups, but Escherichia-Shigella had increased abundance in duodenal microbiota with primary choledocholithiasis, which may play an important role in stone formation. It is noteworthy that Clostridiumsensu_stricto, Lachnospiraceae _UCG-008, Butyrivibrio and Roseburia which could produce short chain fatty acids (SCFAs), were significantly decreased in biliary microbiota with primary CBD stones (p < 0.05). Our study provided new insights into the compositional of normal biliary microbiota. The micro-ecology of biliary and duodenal in patients with stones is complex and closely related, and there is a potential for dysbacteriosis. The decrease in abundance of certain major acid-producing bacteria affects the health of the biliary tract and thus leads to the formation of stones.

Anti-Biofilm Formation of an Adhesive Containing Calcium Salts of Acidic Monomers against Oral Candida Related to Root Caries

The proportion of older people within the general population is expanding due to the decline of birth rate and the increase of life expectancy. Increasing elderly populations, which is retaining its teeth longer, leads to oral health problems, for example, root caries. The main etiological factor for the initiation and development of root caries is the appearance of cariogenic biofilm. The acid-producing and acid-tolerant bacteria and oral yeast, such as Candida albicans are the major contributors in root caries formation. A new generation of adhesives is developed with several modifications for the prevention of dental caries by incorporating antimicrobial components. The aim of this study was to investigate the antimicrobial effect of adhesive containing calcium salt of acidic monomers on the biofilm formation of oral Candida related to root caries. In the experiments, the flat-bottom surfaces of 96-well plate were painted with an adhesive containing calcium salts of 4-methacryloxyethyl trimellitic acid (CMET) and 10-methacryloyloxydecyl dihydrogen calcium phosphate (MDCP) (Bio-Coat, CA, Sun Medical, Japan). Then they were LED light-cured and coated with sterile saliva at 37 °C for 60 min. The biofilm formation was made by adding of Candida albicans (ATCC 10238 and two clinical strains) suspensions (107 colony forming unit/mL) and incubated at 37°C for 24 h. The amount of vital biofilm was determined by WST-8 Microbial Cell Counting Kit (Dojindo Molecular Technologies, USA). All experiments were done in triplicate and repeated three times. Statistical analysis was performed using Student’s t-test. The results clearly showed that adhesive could significantly inhibit biofilm formation of all tested Candida compared with a control. This suppressive effect was not different among the strains of Candida. The percentages of vital biofilm reduction were 25% to 40%. The ability of this adhesive to suppress biofilm of oral yeast may be its antimicrobial property of acidic monomer or the effect of calcium ion within the adhesive, which can alter Candida cell morphology, and influence their structures or process of biofilm formation. In conclusion, an adhesive containing calcium salts of acidic monomers could significantly inhibit biofilm formation of C. albicans. This adhesive could be effectively applied to exposed root surfaces to prevent or inhibit the progression of root caries. Further studies are necessary to clarify the effect on multispecies biofilm, on long-term activity, and in vivo conditions.

Insight into effects of long-chain fatty acids on propionic acid production in anaerobic fermentation: A case study of oleic acid and palmitic acid

This study revealed long-chain fatty acids(LCFAs) on propionic acid production by lipid anaerobic acidogenesis. Oleic acid and palmitic acid, the two most common LCFAs, were added into the acidogenic system to evaluate LCFAs type and concentration on the propionic acid production capacity. The results showed that when the concentration of oleic acid was 4 g/L, the content of volatile fatty acids(VFAs) was 1.3 times higher than that of the blank group(propionic acid was the main product, >70%). In contrast, palmitic acid and excess oleic acid inhibited propionic acid production(butyric acid was the main product). Propionic acid-producing bacteria were the dominant bacteria in an oleic acid production system. According to response surface analysis, the optimal concentration of oleic acid favoring for propionic acid production was 2.3 g/L and fermentation time was 7.4 days in this study. The results showed that a proper concentration of oleic acid has a promotion to propionic acid production. This study provides a theoretical basis for oleic acid to promote propionic acid production.

Top-Down Enrichment Strategy to Co-cultivate Lactic Acid and Lignocellulolytic Bacteria From the Megathyrsus maximus Phyllosphere.

Traditionally, starting inoculants have been applied to improve ensiling of forage used for livestock feed. Here, we aimed to build up a bioinoculant composed of lactic acid-producing and lignocellulolytic bacteria (LB) derived from the Megathyrsus maximus (guinea grass) phyllosphere. For this, the dilution-to-stimulation approach was used, including a sequential modification of the starting culture medium [Man, Rogosa, and Sharpe (MRS) broth] by addition of plant biomass (PB) and elimination of labile carbon sources. Along 10 growth-dilution steps (T1–T10), slight differences were observed in terms of bacterial diversity and composition. After the sixth subculture, the consortium started to degrade PB, decreasing its growth rate. The co-existence of Enterobacteriales (fast growers and highly abundance), Actinomycetales, Bacillales, and Lactobacillales species was observed at the end of the selection process. However, a significant structural change was noticed when the mixed consortium was cultivated in higher volume (500ml) for 8days, mainly increasing the proportion of Paenibacillaceae populations. Interestingly, Actinomycetales, Bacillales, and Lactobacillales respond positively to a pH decrease (4–5), suggesting a relevant role within a further silage process. Moreover, gene-centric metagenomic analysis showed an increase of (hemi)cellulose-degrading enzymes (HDEs) during the enrichment strategy. Reconstruction of metagenome-assembled genomes (MAGs) revealed that Paenibacillus, Cellulosimicrobium, and Sphingomonas appear as key (hemi)cellulolytic members (harboring endo-glucanases/xylanases, arabinofuranosidases, and esterases), whereas Enterococcus and Cellulosimicrobium have the potential to degrade oligosaccharides, metabolize xylose and might produce lactic acid through the phosphoketolase (PK) pathway. Based on this evidence, we conclude that our innovative top-down strategy enriched a unique bacterial consortium that could be useful in biotechnological applications, including the development/design of a synthetic bioinoculant to improve silage processes.