Acetylene Hydratase Research Articles

The Effect of Selenium-Based Ligands on Tungsten Acetylene Complexes.

Bioinspired tungsten acetylene complexes containing pyridine-2-selenolato (PySe) or 6-methyl-pyridine-2-selenolato (6-MePySe) ligands were synthesized. 77Se NMR spectroscopy allowed for an assessment of the resonance structures in the pyridine-2-selenolato ligands and the rationalization of chemoselectivity observed in regard to 1,2 migratory insertion of HC≡CH. [W(CO)(C2H2)(CHCH-PySe)(PySe)] is formed exclusively via insertion of HC≡CH into the W-N bond, while the use of bulkier 6-MePySe allows for the isolation of [W(CO)(C2H2)(6-MePySe)2], which only partially reacts with excess HC≡CH to give [W(CO)(C2H2)(CHCH-6-MePySe)(6-MePySe)]. Oxidation of [W(CO)(C2H2)(6-MePySe)2] with pyridine-N-oxide gave the tungsten(IV) complex [WO(C2H2)(6-MePySe)2]. Complexes [W(CO)(C2H2)(6-MePySe)2] and [WO(C2H2)(6-MePySe)2] react with trimethyl phosphine to carbyne complex [W(CO)(CCH2PMe3)(PMe3)2(6-MePySe)]Cl and alkylidene complex [WO(CHCHPMe3)(PMe3)2(6-MePySe)]Cl, respectively. The addition of substituted alkynes to [W(CO)3(PySe)2] via thermal decarbonylation gave complexes [W(CO)(MeC≡CMe)(PySe)2] and [W(CO)(HC≡Ct-Bu)(PySe)2], respectively. The here presented complexes are relevant for the modeling of the active site of acetylene hydratase from Pelobacter acetylenicus, in which a tungsten atom is enclosed in a sulfur-rich coordination sphere. A recently published theoretical study concluded that the exchange of sulfur for selenium would increase the activity of the enzyme. Our findings contrast this claim as comparative analysis concludes negligible structural and electronic differences between the selenium-based and previously published sulfur-based complexes.

Nucleophiles Target the Tungsten Center Over Acetylene in Biomimetic Models.

Inspired by the first shell mechanism proposed for the tungstoenzyme acetylene hydratase, the electrophilic reactivity of tungsten-acetylene complexes [W(CO)(C2H2)(6-MePyS)2] (1) and [WO(C2H2)(6-MePyS)2] (2) was investigated. The biological nucleophile water/hydroxide and tert-butyl isocyanide were employed. Our findings consistently show that, regardless of the nucleophile used, both tungsten centers W(II) and W(IV), respectively, are the preferred targets over the coordinated acetylene. Treatment of 2 with aqueous NaOH led to protonation of coordinated acetylene to ethylene, pointing toward the Brønsted basic character of the coordinated alkyne instead of the anticipated electrophilic behavior. In cases involving isocyanides as nucleophiles, the attack on the W(II) center of 1 took place first, whereas the W(IV) complex 2 remained unchanged. These experiments indicate that the direct nucleophilic attack of W-coordinated acetylene by water, as some computational studies of acetylene hydratase propose, is unlikely to occur.

Isolation and characterization of a bis(dithiolene)-supported tungsten-acetylenic complex as a model for acetylene hydratase

Acetylene hydratase is currently the only known mononuclear tungstoenzyme that does not catalyze a net redox reaction. The conversion of acetylene to acetaldehyde is proposed to occur at a W(IV) active site through first-sphere coordination of the acetylene substrate. To date, a handful of tungsten complexes have been shown to bind acetylene, but many lack the bis(dithiolene) motif of the native enzyme. The model compound, [W(O)(mnt)2]2−, where mnt2− is 1,2-dicyano-1,2-dithiolate, was previously reported to bind an electrophilic acetylene substrate, dimethyl acetylenedicarboxylate, and characterized by FT-IR, UV–vis, potentiometry, and mass spectrometry (Yadav, J; Das, S. K.; Sarkar, S., J. Am. Chem. Soc., 1997, 119, 4316–4317). By slightly changing the electrophilic acetylene substrate, an acetylenic-bis(dithiolene)‑tungsten(IV) complex has been isolated and characterized by FT-IR, UV–vis, NMR, X-ray diffraction, and X-ray absorption spectroscopy. Activation parameters for complex formation were also determined and suggest coordination-sphere reorganization is a limiting factor in the model complex reactivity.

Nickel-organo compounds as potential enzyme precursors under simulated early Earth conditions

The transition from inorganic catalysis through minerals to organic catalysis by enzymes is a necessary step in the emergence of life. Our work is elucidating likely reactions at the earliest moments of Life, prior to the existence of enzymatic catalysis, by exploring essential intersections between nickel bioinorganic chemistry and pterin biochemistry. We used a prebiotically-inspired acetylene-containing volcanic hydrothermal experimental environment to shed light on the efficient formation of nickel-organo complexes. The simplest bis(dithiolene)nickel complex (C2H2S2)2Ni was identified by UV/Vis spectroscopy, mass spectrometry, nuclear magnetic resonance. Its temporal progression and possible function in this simulated early Earth atmosphere were investigated by isolating the main bis(dithiolene)nickel species from the primordial experimental setup. Using this approach, we uncovered a significant diversity of nickel-organo compositions by identifying 156 elemental annotations. The formation of acetaldehyde through the subsequent degradation of these organo-metal complexes is intriguing, as it is reminiscent of the ability of Pelobacter acetylenicus to hydrate acetylene to acetaldehyde via its bis(dithiolene)-containing enzyme acetylene hydratase. As our findings mechanistically characterize the role of nickel sulfide in catalyzing the formation of acetaldehyde, this fundamental pre-metabolic reaction could play the role of a primitive enzyme precursor of the enzymatic acetylene metabolism and further strengthen the role of acetylene in the molecular origin of life.

Vinyl-pyrazole as a biomimetic acetaldehyde surrogate.

Inspired by the enzyme acetylene hydratase, we investigated the reactivity of acetylene with tungsten(II) pyrazole complexes. Our research revealed that the complex [WBr2(pz-NHCCH3)(CO)3] (pz = 3,5-dimethyl-pyrazolate) facilitates the stochiometric reaction between pzH and acetylene to give N-vinyl-pz. This vinyl compound readily hydrolyzes to acetaldehyde, mirroring the product of acetylene hydration in the enzymatic process. The formation of the vinyl compound likely involves a reactive intermediate complex where acetylene acts as a two-electron donor, in contrast to isolable acetylene complexes that are inert to nucleophilic attack by water. Results suggest an alternative mechanism for the enzyme, including vinylation of a neighboring amino acid by acetylene in the active site prior to hydration.

Acetylenotrophic and Diazotrophic Bradyrhizobium sp. Strain I71 from Trichloroethylene-Contaminated Soils

Acetylene (C2H2) is a trace constituent of Earth’s modern atmosphere and is used by acetylenotrophic microorganisms as their sole carbon and energy source (Akob et al. 2018) Acetylenotrophs hydrate acetylene through a reaction catalyzed by acetylene hydratase, which is a heterogeneous class of enzymes. As of 2018, there were 15 known strains of acetylenotrophs including aerobic species affiliated with the Actinobacteria, and Firmicutes and anaerobic species affiliated with the Desulfobacterota. However, we hypothesized that there was an unknown diversity of acetylenotrophs in nature. We recently expanded the known distribution of acetylenotrophs via the isolation of the aerobic acetylenotroph, Bradyrhizobium sp. strain I71, from trichloroethylene (TCE)-contaminated soils (Akob et al. 2022). Strain I71 is a member of the class Alphaproteobacteria, and this is the first observation of an aerobic acetylenotroph in the Proteobacteria phylum. The isolate grows via heterotrophic and acetylenotrophic metabolism, and is diazotrophic, capable of nitrogen fixation. Acetylenotrophy and nitrogen fixation are the only two enzymatic reactions known to transform acetylene, and this is only the second isolate known to carry out both reactions (Akob et al. 2017, Baesman et al. 2019). Members of Bradyrhizobium are well studied for their abilities to improve plant health and increase crop yields by providing bioavailable nitrogen. The unique capability of Bradyrhizobium sp. strain I71 to utilize acetylene may increase the genus’ economic impact beyond agriculture as acetylenotrophy is closely linked to bioremediation of chlorinated contaminants (Mao et al. 2017, Gushgari-Doyle et al. 2021). Based on genome, cultivation, and protein prediction analysis, the ability to consume acetylene is likely not widespread within the genus Bradyrhizobium. These findings suggest that the suite of phenotypic capabilities of strain I71 may be unique and make it a good candidate for further study in several research avenues such as contaminant biodegradation and nutrient cycling.

Dioxygen Activation by a Bioinspired Tungsten(IV) Complex.

An increasing number of discovered tungstoenzymes raises interest in the biomimetic chemistry of tungsten complexes in oxidation states +IV, +V, and +VI. Bioinspired (sulfur-rich) tungsten(VI) dioxido complexes are relatively prevalent in literature. Still, their energetically demanding reduction directly correlates with a small number of known tungsten(IV) oxido complexes, whose chemistry is not well explored. In this paper, a reduction of the [WO2(6-MePyS)2] (6-MePyS = 6-methylpyridine-2-thiolate) complex with PMe3 to a phosphine-stabilized tungsten(IV) oxido complex [WO(6-MePyS)2(PMe3)2] is described. This tungsten(IV) complex partially releases one PMe3 ligand in solution, creating a vacant coordination site capable of activating dioxygen to form [WO2(6-MePyS)2] and OPMe3. Therefore, [WO2(6-MePyS)2] can be used as a catalyst for the aerobic oxidation of PMe3, rendering this complex a rare example of a tungsten system utilizing dioxygen in homogeneous catalysis. Additionally, the investigation of the reactivity of the tungsten(IV) oxido complex with acetylene, substrate of a tungstoenzyme acetylene hydratase (AH), revealed the formation of the tungsten(IV) acetylene adduct. Although this adduct was previously reported as an oxidation product of the tungsten(II) acetylene carbonyl complex, here it is obtained via substitution at the sulfur-rich tungsten(IV) center, mimicking the initial step of the first shell mechanism for AH as suggested by computational studies.

Acetylenotrophic and Diazotrophic Bradyrhizobium sp. Strain I71 from TCE-Contaminated Soils.

Acetylene (C2H2) is a molecule rarely found in nature, with very few known natural sources, but acetylenotrophic microorganisms can use acetylene as their primary carbon and energy source. As of 2018 there were 15 known strains of aerobic and anaerobic acetylenotrophs; however, we hypothesize there may yet be unrecognized diversity of acetylenotrophs in nature. This study expands the known diversity of acetylenotrophs by isolating the aerobic acetylenotroph, Bradyrhizobium sp. strain I71, from trichloroethylene (TCE)-contaminated soils. Strain I71 is a member of the class Alphaproteobacteria and exhibits acetylenotrophic and diazotrophic activities, the only two enzymatic reactions known to transform acetylene. This unique capability in the isolated strain may increase the genus' economic impact beyond agriculture as acetylenotrophy is closely linked to bioremediation of chlorinated contaminants. Computational analyses indicate that the Bradyrhizobium sp. strain I71 genome contains 522 unique genes compared to close relatives. Moreover, applying a novel hidden Markov model of known acetylene hydratase (AH) enzymes identified a putative AH enzyme. Protein annotation with I-TASSER software predicted the AH from the microbe Syntrophotalea acetylenica as the closest structural and functional analog. Furthermore, the putative AH was flanked by horizontal gene transfer (HGT) elements, like that of AH in anaerobic acetylenotrophs, suggesting an unknown source of acetylene or acetylenic substrate in the environment that is selecting for the presence of AH. IMPORTANCE The isolation of Bradyrhizobium strain I71 expands the distribution of acetylene-consuming microbes to include a group of economically important microorganisms. Members of Bradyrhizobium are well studied for their abilities to improve plant health and increase crop yields by providing bioavailable nitrogen. Additionally, acetylene-consuming microbes have been shown to work in tandem with other microbes to degrade soil contaminants. Based on genome, cultivation, and protein prediction analysis, the ability to consume acetylene is likely not widespread within the genus Bradyrhizobium. These findings suggest that the suite of phenotypic capabilities of strain I71 may be unique and make it a good candidate for further study in several research avenues.

Discovery and Characterization of the Metallopterin-Dependent Ergothioneine Synthase from Caldithrix abyssi.

Ergothioneine is a histidine derivative with a 2-mercaptoimidazole side chain and a trimethylated α-amino group. Although the physiological function of this natural product is not yet understood, the facts that many bacteria, some archaea, and most fungi produce ergothioneine and that plants and animals have specific mechanisms to absorb and distribute ergothioneine in specific tissues suggest a fundamental role in cellular life. The observation that ergothioneine biosynthesis has emerged multiple times in molecular evolution points to the same conclusion. Aerobic bacteria and fungi attach sulfur to the imidazole ring of trimethylhistidine via an O2-dependent reaction that is catalyzed by a mononuclear non-heme iron enzyme. Green sulfur bacteria and archaea use a rhodanese-like sulfur transferase to attach sulfur via oxidative polar substitution. In this report, we describe a third unrelated class of enzymes that catalyze sulfur transfer in ergothioneine production. The metallopterin-dependent ergothioneine synthase from Caldithrix abyssi contains an N-terminal module that is related to the tungsten-dependent acetylene hydratase and a C-terminal domain that is a functional cysteine desulfurase. The two modules cooperate to transfer sulfur from cysteine onto trimethylhistidine. Inactivation of the C-terminal desulfurase blocks ergothioneine production but maintains the ability of the metallopterin to exchange sulfur between ergothioneine and trimethylhistidine. Homologous bifunctional enzymes are encoded exclusively in anaerobic bacterial and archaeal species.

The Effect of Pyridine-2-thiolate Ligands on the Reactivity of Tungsten Complexes toward Oxidation and Acetylene Insertion.

Intending to deepen our understanding of tungsten acetylene (C2H2) chemistry, with regard to the tungstoenzyme acetylene hydratase, here we explore the structure and reactivity of a series of tungsten acetylene complexes, stabilized with pyridine-2-thiolate ligands featuring tungsten in both +II and +IV oxidation states. By varying the substitution of the pyridine-2-thiolate moiety with respect to steric and electronic properties, we examined the details and limits of the previously reported intramolecular nucleophilic attack on acetylene followed by the formation of acetylene inserted complexes. Here, we demonstrate that only the combination of high steric demand and electron-withdrawing features prevents acetylene insertion. Nevertheless, although variable synthetic approaches are necessary for their synthesis, tungsten acetylene complexes can be stabilized predictably with a variety of pyridine-2-thiolate ligands.

Bioinspired Nucleophilic Attack on a Tungsten-Bound Acetylene: Formation of Cationic Carbyne and Alkenyl Complexes.

Inspired by the proposed inner-sphere mechanism of the tungstoenzyme acetylene hydratase, we have designed tungsten acetylene complexes and investigated their reactivity. Here, we report the first intermolecular nucleophilic attack on a tungsten-bound acetylene (C2H2) in bioinspired complexes employing 6-methylpyridine-2-thiolate ligands. By using PMe3 as a nucleophile, we isolated cationic carbyne and alkenyl complexes.

Unraveling the Way Acetaldehyde is Formed from Acetylene: A Study Based on DFT

Acetylene hydratase (AH) of Pelobacter acetylenicus is a tungsten (W)-containing iron–sulfur enzyme that catalyzes the transformation of acetylene to acetaldehyde, the exact/true reaction mechanism of which is still in question. Scientists utilized different computational approaches to understand the reaction mechanism of acetylene hydration. Some identified it as a multistep (4–16) process that starts with the displacement of a water molecule present at the active site of AH with acetylene. However, some said that there is no need to displace water with acetylene at the active site of AH. As the reaction mechanism for the conversion of acetylene to acetaldehyde is still controversial and needs to be investigated further, DFT studies were performed on the model complexes derived from the native protein X-ray crystal structure of AH. Based on the computational results, here we are proposing the nucleophilic reaction mechanism where the water (Wat1424) molecule is coordinated to the W center and Asp13 is assumed to be in an anionic form. The Wat1424 molecule is activated by W and then donates one of its protons to the anionic Asp13, forming the W-bound hydroxide and protonated Asp13. The W-bound hydroxide then attacks the C1 atom of acetylene together with the transfer of a proton from Asp13 to its C2 atom, resulting in the formation of a vinyl alcohol intermediate complex. The energy barrier associated with this step is 14.4 kcal/mol. The final, rate-limiting, step corresponds to the tautomerization of the vinyl alcohol intermediate to acetaldehyde via intermolecular assistance of two water molecules, associated with an energy barrier of 18.9 kcal/mol. Also, the influence of the metal on the hydration of acetylene is studied when W is replaced with Mo.

A QM/MM investigation of the catalytic mechanism of acetylene hydratase: insights into engineering a more effective enzyme

In the present investigation, a QM/MM approach was used to better understand the effect of the second environmental shell of the active site on the catalytic conversion of acetylene to acetaldehyde by acetylene hydratase (AH). In addition, the effect of substituting W-coordinating sulfur atoms with selenium atoms was done to provide insight into the influence of the W-coordinating atoms on the catalytic reaction. From the results, it found that the presence of the second shell environment had a significant effect on the reaction. Specifically, in the absence of the MM second shell environment (i.e., QM-cluster model), the rate-determining step is defined by the first proton transfer step. In contrast, for the QM/MM model, the rate-determining step is defined by the water attacking step. Moreover, with the presence of the MM second shell environment, a key intermediate found in the DFT-cluster investigation does not exist in the QM/MM investigation. Rather, what was a two-step process in the DFT-cluster study was calculated to occur in a single step for the QM/MM study. Regarding the sulfur to selenium substitutions, it was found that Gibbs energy for the acetylene binding phase was significantly affected. Notably, the trans-position selenium made the binding of acetylene 65.6 kJ mol−1 less endergonic. Moreover, the overall reaction became 38.2 kJ mol−1 less endergonic compared with the wild type (WT) AH model. Thus, the substitution of key W-coordinating sulfur atoms with selenium atoms may offer a means to enhance the catalytic mechanism of AH considerably.

Soft Scorpionate Hydridotris(2-mercapto-1-methylimidazolyl) borate) Tungsten-Oxido and -Sulfido Complexes as Acetylene Hydratase Models.

A series of WIV alkyne complexes with the sulfur‐rich ligand hydridotris(2‐mercapto‐1‐methylimidazolyl) borate) (TmMe) are presented as bio‐inspired models to elucidate the mechanism of the tungstoenzyme acetylene hydratase (AH). The mono‐ and/or bis‐alkyne precursors were reacted with NaTmMe and the resulting complexes [W(CO)(C2R2)(TmMe)Br] (R=H 1, Me 2) oxidized to the target [WE(C2R2)(TmMe)Br] (E=O, R=H 4, Me 5; E=S, R=H 6, Me 7) using pyridine‐N‐oxide and methylthiirane. Halide abstraction with TlOTf in MeCN gave the cationic complexes [WE(C2R2)(MeCN)(TmMe)](OTf) (E=CO, R=H 10, Me 11; E=O, R=H 12, Me 13; E=S, R=H 14, Me 15). Without MeCN, dinuclear complexes [W2O(μ‐O)(C2Me2)2(TmMe)2](OTf)2 (8) and [W2(μ‐S)2(C2Me2)(TmMe)2](OTf)2 (9) could be isolated showing distinct differences between the oxido and sulfido system with the latter exhibiting only one molecule of C2Me2. This provides evidence that a fine balance of the softness at W is important for acetylene coordination. Upon dissolving complex 8 in acetonitrile complex 13 is reconstituted in contrast to 9. All complexes exhibit the desired stability toward water and the observed effective coordination of the scorpionate ligand avoids decomposition to disulfide, an often‐occurring reaction in sulfur ligand chemistry. Hence, the data presented here point toward a mechanism with a direct coordination of acetylene in the active site and provide the basis for further model chemistry for acetylene hydratase.

Structural Mimics of Acetylene Hydratase: Tungsten Complexes Capable of Intramolecular Nucleophilic Attack on Acetylene.

Bioinspired complexes employing the ligands 6‐tert‐butylpyridazine‐3‐thione (SPn) and pyridine‐2‐thione (SPy) were synthesized and fully characterized to mimic the tungstoenzyme acetylene hydratase (AH). The complexes [W(CO)(C2H2)(CHCH‐SPy)(SPy)] (4) and [W(CO)(C2H2)(CHCH‐SPn)(SPn)] (5) were formed by intramolecular nucleophilic attack of the nitrogen donors of the ligand on the coordinated C2H2 molecule. Labelling experiments using C2D2 with the SPy system revealed the insertion reaction proceeding via a bis‐acetylene intermediate. The starting complex [W(CO)(C2H2)(SPy)2] (6) for these studies was accessed by the new acetylene precursor mixture [W(CO)(C2H2)n(MeCN)3−nBr2] (n=1 and 2; 7). All complexes represent rare examples in the field of W−C2H2 chemistry with 4 and 5 being the first of their kind. In the ongoing debate on the enzymatic mechanism, the findings support activation of acetylene by the tungsten center.

Computational study of acetylene hydration by bio-inspired group six catalyst models

A combination of density functional theory and natural bond orbital analysis was employed to study two bio-inspired catalyst models that mimic the acetylene hydratase active site. The Group 6 metals (Cr, Mo, W) and substituents (CN, H, CH3) on the dithiolate supporting ligands were used to evaluate the effect of metal identity and supporting ligand on free energy barriers and the thermodynamics of the reaction. In catalyst model 1, a metal-bound hydroxo ligand (MIV-OH) acts as a general base, while in catalyst model 2, a propionate plays the role of general base. The calculations showed that in both chromium complexes 1 and 2, acetylene does not bind to the metal in the reactant catalysts, suggesting that Cr is not a soft enough acid in the 4+ formal oxidation state to bind acetylene. The comparison of calculated free energies for molybdenum and tungsten complexes reveals that for models 1 and 2, Mo complexes have lower free energy barriers and are more exergonic as compared to the W variant. Comparing the energy profiles of complexes 1 and 2 indicates that on average, complex 2 has lower barrier energies in comparison to 1, while model 1 has a more exergonic ΔGrxn for acetylene hydration. NBO analysis suggests a metallocyclopropene constitutes the more faithful representation of the Mo and W reactants rather than a π-acetylene. Furthermore, calculations indicate that for both complexes 1 and 2, using electron withdrawing substituents such as CN on dithiolate supporting ligands lowers the activation free energies compared to CH3 and H substituents. Analysis of the impact of polarity through use of different continuum solvents on the reaction coordinate suggest that a less polar active site is more favorable for acetylene hydration.

Is the tungsten(IV) complex (NEt4)2[WO(mnt)2] a functional analogue of acetylene hydratase?

The tungsten(IV) complex (Et4N)2[W(O)(mnt)2] (1; mnt = maleonitriledithiolate) was proposed (Sarkar et al., J. Am. Chem. Soc. 1997, 119, 4315) to be a functional analogue of the active center of the enzyme acetylene hydratase from Pelobacter acetylenicus, which hydrates acetylene (ethyne; 2) to acetaldehyde (ethanal; 3). In the absence of a satisfactory mechanistic proposal for the hydration reaction, we considered the possibility of a metal–vinylidene type activation mode, as it is well established for ruthenium-based alkyne hydration catalysts with anti-Markovnikov regioselectivity. To validate the hypothesis, the regioselectivity of tungsten-catalyzed alkyne hydration of a terminal, higher alkyne had to be determined. However, complex 1 was not a competent catalyst for the hydration of 1-octyne under the conditions tested. Furthermore, we could not observe the earlier reported hydration activity of complex 1 towards acetylene. A critical assessment of, and a possible explanation for the earlier reported results are offered. The title question is answered with "no".

Detection of Diazotrophy in the Acetylene-Fermenting Anaerobe Pelobacter sp. Strain SFB93.

Acetylene (C2H2) is a trace constituent of the present Earth's oxidizing atmosphere, reflecting a mixture of terrestrial and marine emissions from anthropogenic, biomass-burning, and unidentified biogenic sources. Fermentation of acetylene was serendipitously discovered during C2H2 block assays of N2O reductase, and Pelobacter acetylenicus was shown to grow on C2H2 via acetylene hydratase (AH). AH is a W-containing, catabolic, low-redox-potential enzyme that, unlike nitrogenase (N2ase), is specific for acetylene. Acetylene fermentation is a rare metabolic process that is well characterized only in P. acetylenicus DSM3246 and DSM3247 and Pelobacter sp. strain SFB93. To better understand the genetic controls for AH activity, we sequenced the genomes of the three acetylene-fermenting Pelobacter strains. Genome assembly and annotation produced three novel genomes containing gene sequences for AH, with two copies being present in SFB93. In addition, gene sequences for all five compulsory genes for iron-molybdenum N2ase were also present in the three genomes, indicating the cooccurrence of two acetylene transformation pathways. Nitrogen fixation growth assays showed that DSM3426 could ferment acetylene in the absence of ammonium, but no ethylene was produced. However, SFB93 degraded acetylene and, in the absence of ammonium, produced ethylene, indicating an active N2ase. Diazotrophic growth was observed under N2 but not in experimental controls incubated under argon. SFB93 exhibits acetylene fermentation and nitrogen fixation, the only known biochemical mechanisms for acetylene transformation. Our results indicate complex interactions between N2ase and AH and suggest novel evolutionary pathways for these relic enzymes from early Earth to modern days.IMPORTANCE Here we show that a single Pelobacter strain can grow via acetylene fermentation and carry out nitrogen fixation, using the only two enzymes known to transform acetylene. These findings provide new insights into acetylene transformations and adaptations for nutrient (C and N) and energy acquisition by microorganisms. Enhanced understanding of acetylene transformations (i.e., extent, occurrence, and rates) in modern environments is important for the use of acetylene as a potential biomarker for extraterrestrial life and for degradation of anthropogenic contaminants.

Acetylene hydratase: a non-redox enzyme with tungsten and iron-sulfur centers at the active site.

In living systems, tungsten is exclusively found in microbial enzymes coordinated by the pyranopterin cofactor, with additional metal coordination provided by oxygen and/or sulfur, and/or selenium atoms in diverse arrangements. Prominent examples are formate dehydrogenase, formylmethanofuran dehydrogenase, and aldehyde oxidoreductase all of which catalyze redox reactions. The bacterial enzyme acetylene hydratase (AH) stands out of its class as it catalyzes the conversion of acetylene to acetaldehyde, clearly a non-redox reaction and a reaction distinct from the reduction of acetylene to ethylene by nitrogenase. AH harbors two pyranopterins bound to W, and a [4Fe-4S] cluster. W is coordinated by four dithiolene sulfur atoms, one cysteine sulfur, and one oxygen ligand. AH activity requires a strong reductant suggesting W(IV) as the active oxidation state. Two different types of reaction pathways have been proposed. The 1.26Å structure reveals a water molecule coordinated to W which could gain a partially positive net charge by the adjacent protonated Asp-13, enabling a direct attack of C2H2. To access the W-Asp site, a substrate channel was evolved distant from where it is found in other members of the DMSOR family. Computational studies of this second shell mechanism led to unrealistically high energy barriers, and alternative pathways were proposed where C2H2 binds directly to W. The architecture of the catalytic cavity, the specificity for C2H2 and the results from site-directed mutagenesis do not support this first shell mechanism. More investigations including structural information on the binding of C2H2 are needed to present a conclusive answer.

Towards Structural-Functional Mimics of Acetylene Hydratase: Reversible Activation of Acetylene using a Biomimetic Tungsten Complex.

The synthesis and characterization of a biomimetic system that can reversibly bind acetylene (ethyne) is reported. The system has been designed to mimic catalytic intermediates of the tungstoenzyme acetylene hydratase. The thiophenyloxazoline ligand S-Phoz (2-(4',4'-dimethyloxazolin-2'-yl)thiophenolate) is used to generate a bioinspired donor environment around the W center, facilitating the stabilization of W-acetylene adducts. The featured complexes [W(C2 H2 )(CO)(S-Phoz)2 ] (2) and [WO(C2 H2 )(S-Phoz)2 ] (3) are extremely rare from a synthetic and structural point of view as very little is known about W-C2 H2 adducts. Upon exposure to visible light, 3 can release C2 H2 from its coordination sphere to yield the 14-electron species [WO(S-Phoz)2 ] (4). Under light-exclusion 4 re-activates C2 H2 making this the first fully characterized system for the reversible activation of acetylene.