Abundance Of Microbial Communities Research Articles

Effects of bulk forms and nanoparticles of zinc and copper oxides on the abundance, nitrogen cycling and enzymatic activities of microbial communities, morphometric parameters and antioxidant status of Hordeum vulgare L.

Uncontrolled use or improper disposal of bulk forms and nanoparticles of heavy metals may lead to their release into the environment. Coastal and floodplain ecosystems are particularly vulnerable, and the effects of metal nanoparticles on Fluvisol and Stagnic Fluvisol are poorly studied. This study aims to examine the effect of heavy metals on the enzymatic activity of the soil, the abundance of culturable microorganisms, growth, and antioxidant status of H. vulgare L. A model experiment was carried out with contamination of Stagnic Fluvisol Humic and Fluvisol with 2200 and 1320 mg kg-1 Zn and Cu, to assess the ecotoxicity of bulk forms and nanoparticles of ZnO and CuO in floodplain soils. The abundance of culturable microorganisms, namely copiotrophs, prototrophs, oligotrophs and nitrogen fixers increased. However, a sharp decrease in dehydrogenase activity and denitrification occurred. This effect was more pronounced in Fluvisol (7 times) than in Stagnic Fluvisol Humic (3 times). The accumulation of HMs was also higher in plants grown in Fluvisol (16-32 times) than in Stagnic Fluvisol Humic (13-24 times), which led to a decrease in plant growth and activation of antioxidant defense systems. An increase in the level of malondialdehyde, and the activity of superoxide dismutase and catalase indicates the induction of oxidative stress. Heavy metals have a greater impact on the biological properties of Fluvisol compared to Stagnic Fluvisol Humic. The presence of heavy metals boosts the abundance of culturable microorganisms, while nanoparticles hinder plant growth more than bulk heavy metals.

Bacterial Diversity in Deep-Sea Sediment of West Pacific Nodule Province

Dense polymetallic nodule fields are found in different areas of the Pacific and Indian Oceans. However, limited knowledge exists about microbial diversity, processes and functions in deep-sea polymetallic nodule sediments. This study investigated microbial diversity, composition and function in sediments from various locations and depths in a western Pacific polymetallic nodule province. Sediment cores were collected, DNA extracted, and the V3–V4 regions of the 16S rRNA gene were sequenced using Illumina MiSeq. The test results show that the abundance and diversity of microbial communities in sediments from different sites vary significantly. The dominant microbial communities at the family level in the three sediment samples were all mainly Marinobacteraceae and Alcanivoracaceae. Sediment samples from core 1 had similar microbial structures and microbial community functions. Surface sediment had higher species richness, diversity and evenness than the middle layer. The dominant phylum at different depths was consistent. There was significant spatial heterogeneity in the microbial community within sediments from polymetallic nodule regions. This study expands on our knowledge of the spatial and vertical distribution of microbial community diversity beneath polymetallic nodules in deep-sea settings.

The influence of alterations in the composition of intestinal microbiota on neurovascular coupling and cognitive dysfunction in individuals afflicted with CSVD

IntroductionAn expanding body of research has explored the crucial role of gut microbiota in cerebral small vessel disease (CSVD). The objective of this study is to investigate alterations in the gut microbiota structure among CSVD patients, to explore the correlation between differential taxonomic levels and the neurovascular coupling index as well as cognitive function and to elucidate the imaging and biomarkers of mild cognitive impairment (MCI) in CSVD. MethodsWe enrolled 104 patients with CSVD and 40 healthy controls (HC). Based on cognitive test scores, CSVD patients were categorized into a cognitively normal group (CSVD-NCI, n=61) and a mild cognitive impairment group (CSVD-MCI, n=43). Performing magnetic resonance imaging (MRI) scans, gut microbiota analysis, as well as clinical and neuropsychological assessments for all participants. Based on arterial spin labeling (ASL) and blood oxygen level-dependent (BOLD) imaging data, cerebral blood flow (CBF) and neural activity indices are computed. The coupling indices of CBF/mReHo, CBF/mfALFF, CBF/mALFF, and CBF/mDC are calculated to assess the whole-brain neurovascular coupling changes in patients with CSVD. ResultsSpecies annotation revealed differences in the composition at the phylum and genus levels among the HC, CSVD-NCI, and CSVD-MCI groups. Additionally, differential analysis using the Kruskal-Wallis test demonstrated specific dominant microbial communities in all three groups. The relative abundance of certain dominant microbial communities in CSVD patients exhibited correlations with neurovascular coupling and cognitive function. The combined assessment of Bacteroides genus and CBF/mDC proved effective in distinguishing between CSVD-NCI and CSVD-MCI, providing a novel non-invasive approach for the diagnosis of MCI in CSVD.

Effects of soil acidification on humus, electric charge, and bacterial community diversity.

Soil acidification due to the long-term application of nitrogenous fertilizers and the consequent impact on crop growth have been frequently reported. The effects of acidification on soil humus, charge, and microbial communities need to be studied. In this experiment, fertilizer drenching was used to simulate the effects of multiple years of fertilizer application on the black soil. The results showed that 25years of soil acidification treatment resulted in a decrease of 8.97% in the content of stable humus and led to a decrease of 58% and 51.18% in the humic acid (HA) content and degree of humification (PQ) value in stable humus, respectively. In addition, soil acidification leads to a significant decrease in total negative charge (CEC8.2) and variable negative charge (CECv), with both decreasing by 63.28% and 88.67%, respectively, at 25years. Acidification treatments affected both soil microbial community abundance and diversity, with a significant decrease in Acidobacteriota and Gemmatimonadota abundance and an increase in Bacteroidia abundance and Acidobacteriota abundance at 25years.

The impact of pine wilt disease on the endophytic microbial communities structure of Pinus koraiensis.

Pine Wilt Disease (PWD) is a devastating pine tree disease characterized by rapid onset, high mortality rate, quick spread, and difficulty in control. Plant microbiome plays a significant role in the development of PWD. However, the endophytic microbial communities of Pinus koraiensis infected by pine wood nematode (PWN) Bursaphelenchus xylophilus remain largely unexplored. In this study, we analyzed the structural changes of endophytic communities of P. koraiensis after infection by the PWN using high-throughput sequencing technology. The results showed that the community structure underwent significant changes as the degree of PWN infection intensified. The diversity and abundance of endophytic fungi in P. koraiensis increased, while those of endophytic bacteria in P. koraiensis decreased during the infection process. Meanwhile, the abundance of some dominant microorganisms has also changed, including species such as Graphilbum and Pseudoalteromonas. Functional prediction analysis showed that the functional composition of endophytic fungi in P. koraiensis was significantly different across the development of PWD, while the composition of endophytic bacteria remained essentially similar. The results indicated that PWN infection had a significant impact on the structure, diversity, abundance, and functional gene composition of endophytic microbial communities in P. koraiensis, and most of the main endophytic microbial groups tended to coordinate with each other. This work provides a better understanding of the changes in endophytic community structure and function caused by PWD infection of P. koraiensis, which may benefit the exploration of potential endophytes for PWN biocontrol.

Different Adaption Strategies of Abundant and Rare Microbial Communities in Sediment and Water of East Dongting Lake.

The dynamics of aquatic microbes is of great importance for comprehending the acclimatisation and evolution of microorganisms in lake ecology. However, little is known about the adaption strategies of microbial communities in East Dongting Lake, which had special and complexity geographical characteristics. A semi-enclosed lake area (A) and a waterway connected to Yangtze River (B) both existed in the lake zone. Here, we investigated bacterial and fungal community diversity, community network and community assembly processes in sediment and water. The results indicated that the proportion of OTU numbers and their relative abundance for rare and abundant taxa were different obviously between sediment and water, but not between bacteria and fungi. However, abundant subcommunities dominated the shifts of bacterial community diversity and structure in A region, while rare subcommunities for fungal community diversity. Compared to fungal community, bacterial network was more compact and more key stones were identified as rare taxa. In addition, stochastic processes (dispersal limitation) drove the community assembly of abundant and rare subcommunities, but the effects of deterministic processes (including variable and heterogeneous selections) affected more on rare rather than abundant taxa. Partial Mantel test further indicated that the effect of environmental factors was a stronger force in shaping abundant bacterial subcommunities (TOC, NH4+-N, TN, and ORP) and rare fungal subcommunities (ORP). Environmental factors explained more of the variation in bacterial community structure than that in fungal community structure, although they had additional effects on fungal community diversity and community assembly. Moreover, bacterial community affected the fungal community as a biotic factor in water. This research provided new insights into better understanding of microbial communities in the complex environment of the East Dongting Lake.

Gut microbiome as biomarker for triclosan toxicity in Labeo rohita: bioconcentration, immunotoxicity and metagenomic profiling.

Triclosan (TCS) is a lipophilic, broad spectrum antimicrobial agent commonly used in personal care products with a projected continuous escalation in aquatic environments in the post COVID 19 era. There is rich documentation in the literature on the alteration of physiological responses in fish due to TCS exposure; however, studies on gut associated bacteria of fish are still scarce. This is the first attempt to determine changes in bacterial community structure due to exposure of TCS on Labeo rohita, a commercially essential freshwater species, using 16S V3-V4 region ribosomal RNA (rRNA) next-generation sequencing (NGS). Chronic exposure of TCS at environmentally realistic concentrations viz. 1/5th (T1: 0.129 mg/L) and 1/10th (T2: 0.065 mg/L) of LC50 for 28 days resulted in the dose dependent bioconcentration of TCS in the fish gut. Prolonged exposure to TCS leads to disruption of gut bacteria evidenced by down regulation of the host immune system. Additionally, high-throughput sequencing analysis showed alternation in the abundance and diversity of microbial communities in the gut, signifying Proteobacteria and Verrucomicrobia as dominant phyla. Significant changes were also observed in the relative abundance of Chloroflexi and Gammatimonadetes phyla in TCS exposed groups. The study revealed that gut microbiome can be used as a biomarker in assessing the degree of TCS toxicity in commercially important fish species.

Blocking endogenous phosphorus release in sediments by a hydrotalcite mixture synthesized with natural sepiolite and discarded cans

Pure hydrotalcite (LDH) materials prepared from chemical reagents have been investigated as solid-phase phosphorus (P) inactivation materials (SPIM) to manage endogenous P loading in sediments. However, the efficacy and mechanism of LDH mixtures prepared by natural minerals and solid wastes in controlling sediment P release are unclear. Therefore, a Ca/Mg-Al-LDH (CMA-LDH) material was synthesized using sepiolite and cans, and its efficacy, mechanism, and ecological impact in controlling sediment P release were investigated. CMA-LDH-p was prepared as a control material using pure chemical reagents. The CMA-LDH and CMA-LDH-p were both composed of hydrotalcite and hydrocalumite. The maximum P adsorption capacity of CMA-LDH was 123.01 mg/g, comparable to that of CMA-LDH-p. The adsorbed P by CMA-LDH was mostly in the stable P form, accounting for 87.2 % of the total P. The adsorption capacity and immobilization ability of CMA-LDH for P were superior to other reported LDH-based SPIM. Both the CMA-LDH addition and capping successfully blocked sediment P release under anaerobic conditions. Passivation of mobile P in the sediment and DGT-labile P in the interstitial water was critical to preventing sediment P release by the CMA-LDH addition. The CMA-LDH capping inhibited sediment P release through the effective adsorption of CMA-LDH on DGT-labile P at the sediment/overlying water interface. The CMA-LDH addition and capping affected the abundance of microbial communities associated with iron and sulfur cycling, which might affect the stability of endogenous P. These results confirmed that CMA-LDH addition and capping treatments were effective methods for managing sediment P loading.

Evaluation of biofilm assembly and microbial diversity on a freshwater, ferrous-hulled shipwreck.

The overall structure, abundance, and diversity of microbial communities on shipwrecks have recently been studied in marine aquatic environments. While previous studies have looked at the microbial communities associated with shallow-water ferrous-hulled wrecks in marine environments, studies focusing on freshwater wreck systems are limited. The purpose of this study was to determine microbial community diversity and composition trends across the Accomac shipwreck environment. Furthermore, shipwrecks are colonized by corrosion-causing taxa, such as iron-oxidizing bacteria and sulfate-reducing bacteria which have been shown to influence the biocorrosion of ferrous-hulled structures. Identification of various microbes in biofilms, as well as corrosion-causing microbes, can help researchers identify the role they play in aquatic ecosystem development and persistence as well as artificial reef integrity. Understanding how microbes assemble on wrecks will provide insight into preservation strategies to prevent deterioration of these wrecks over time, as well as limiting biocorrosion of similar structures.

Control of dissolved H2 concentration enhances electron generation, transport and TCE reduction by indigenous microbial community

Electrokinetic enhanced bioremediation (EK-Bio) is practical for trichloroethene (TCE) dechlorination because the cathode can produce a wide range of dissolved H2 (DH) concentrations of 1.3–0 mg/L from the electrode to the aquifer. In this study, TCE dechlorination was investigated under different DH concentrations. The mechanisms were discussed by analyzing the microbial community structure and abundance of organohalide-respiring bacteria (OHRB) using 16S rRNA, and the gene abundances of key enzymes in the TCE electron transport chain using metagenomic analysis. The results showed that the moderate DH concentration of 0.19–0.53 mg/L exhibited the most pronounced TCE dechlorination, even better than the higher DH concentrations, due to the optimal redox environment, the enrichments of OHRB, reductive dehalogenase (rdhA) genes and key enzyme genes in the electron generation and transport chain. More electrons were obtained from H2 metabolism by Dehalobacter by promoting the formation of [NiFe] hydrogenase (HupS/L/C) or from glycolysis by versatile OHRB by stimulating the formation of formate and enriching formate dehydrogenase (FDH) under moderate DH conditions. In addition, the enhanced amino acid metabolism improved the vitamin K cycle for electron transport and enriched the reductive dechlorinating enzyme (RDase) genes. This study identifies the optimal DH concentration that facilitates bioremediation efficiency, provides insights into microbial community shifts and key enzymatic pathways in EK-Bio remediation.

Osteoporosis in postmenopausal women is associated with disturbances in gut microbiota and migration of peripheral immune cells

BackgroundPostmenopausal osteoporosis (PMO) results from a reduction in bone mass and microarchitectural deterioration in bone tissue due to estrogen deficiency, which may increase the incidence of fragility fractures. In recent years, the “gut-immune response-bone” axis has been proposed as a novel potential approach in the prevention and treatment of PMO. Studies on ovariectomized murine model indicated the reciprocal role of Th17 cells and Treg cells in the aetiology of osteoporosis. However, the relationship among gut microbiota, immune cells and bone metabolic indexes remains unknown in PMO.MethodsA total of 77 postmenopausal women were recruited for the study and divided into control (n = 30), osteopenia (n = 19), and osteoporosis (n = 28) groups based on their T score. The frequency of Treg and Th17 cells in lymphocytes were analyzed by flow cytometry. The serum levels of interleukin (IL)-10, 17 A, 1β, 6, tumor necrosis factor (TNF)-α, and lipopolysaccharide (LPS) were determined via enzyme-linked immunosorbent assay. Additionally, 16S rRNA gene V3-V4 region sequencing analysis was performed to investigate the gut microbiota of the participants.ResultsThe results demonstrated decreased bacterial richness and diversed intestinal composition in PMO. In addition, significant differences of relative abundance of the gut microbial community in phylum and genus levels were found, mainly including increased Bacteroidota, Proteobacteria, and Campylobacterota, as well as reduced Firmicutes, Butyricicoccus, and Faecalibacterium. Intriugingly, in the osteoporosis group, the concentration of Treg cells and associated IL-10 in peripheral circulation was negatively regulated, while other chronic systemic proinflammatory cytokines and Th17 cells showed opposite trends. Moreover, significantly elevated plasma lipopolysaccharide (LPS) in patients with osteoporosis indicated that disrupted intestinal integrity and permeability. A correlation analysis showed close relationships between gut bacteria and inflammation.ConclusionsCollectively, these observations will lead to a better understanding of the relationship among bone homeostasis, the microbiota, and circulating immune cells in PMO. The elevated LPS levels of osteoporosis patients which not only indicate a breach in intestinal integrity but also suggest a novel biomarker for assessing osteoporosis risk linked to gut health.

Remediation of Pb and Cd contaminated sediments by wheat straw biochar and microbial community analysis

Wheat straw biochar (BC) or modified wheat straw biochar (MBC) could affect the aggregate structure of soil, effectively adsorb heavy metal and reduce the bioavailability of heavy metals in soil. TGA, BET, FTIR and SEM were used to characterize the surface morphology and structure of BC and MBC. The adsorption properties of BC and MBC on Pb(‌II) and Cd(‌II) in solution systems were investigated by batch experiments, and the remediation performance of Pb and Cd contaminated sediment by BC or MBC were studied by pot experiments. The results showed that MBC had a larger specific surface area of 46.04 m2/g and total pore volume 0.0555 cm3/g; the adsorption isotherms of Pb(II) and Cd(II) for BC and MBC were more suitable for Langmuir model (R2 over 0.91), and the maximum adsorption capacities of Pb(II) and Cd(II) by MBC could reach 71.14 and 115.64 mg/g, respectively. BC or MBC promoted the transformation of Pb and Cd from the extractable acid fraction to the oxidizable and residual fraction, reduced the migration of heavy metals and enhanced the stability of aggregates. Therefore, the results provided a perspective for the dredged contaminated sediments used as planting soil. In addition, BC or MBC, as soil amendments, could improve the abundance of microbial community. At the phylum level, the main dominant bacteria were Proteobacteria and Bacteroidetes.

Effects of tourmaline on the establishment, idling, and recovery of partial nitrification: Mechanistic understanding and performance evaluation

The effects of different doses of tourmaline (Tm) on the partial nitrification (PN) system were investigated in this study. Tourmaline − Partial Nitrification sequential batch reactor (TmPNSBR) aimed to optimize the efficiency of PN for nitrogen removal in wastewater treatment. These results showed that Tm could reduce the time for PN establishment with a maximum reduction of 67.71% (Tm 8), maintained the stability of microbial community structure during the idle period, increased the ammonia oxidation rate, and promoted nitrite accumulation. Tm stimulated microorganisms to secrete more EPS (increase 7.92%–22.43% in phase I), and microorganisms adhere closely to the surface of Tm. Microbial community analysis showed that adding Tm could change the microbial community abundance and diversity, Tm increased the Ammonia-oxidizing bacteria (AOB) abundance (increase 7.92%–22.43% in phase I) and decreased the nitrite-oxidizing bacteria (NOB) abundance. Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt2) predicted increased content of key enzymes associated with PN and electron transport-related complexes. This study delved into the potential of Tm to mitigate environmental pollution as an efficient and environmentally friendly new material that optimizes the PN process, thereby contributing to the energy-efficient treatment of sustainable wastewater.

Group B Streptococcus vaginal colonisation throughout pregnancy is associated with decreased Lactobacillus crispatus and increased Lactobacillus iners abundance in the vaginal microbial community.

Group B Streptococcus (GBS) asymptomatically colonises the vagina of up to 40% of pregnant women and can transmit to neonates during birth, causing neonatal pneumonia, sepsis, meningitis, and significant mortality. Vaginal GBS colonisation can be attributed to a range of host and bacterial factors, which may include the composition of the vaginal microbial community. There are few studies that have examined the vaginal community composition in relation to GBS colonisation throughout pregnancy. Here, we performed 16S rRNA sequencing (V3-V4) on vaginal swabs from women at 24- and 36-weeks' gestation, who were GBS culture-negative or GBS culture-positive at either 24 weeks or 36 weeks' gestation or at both timepoints. Vaginal swabs from 93 women were analysed; 46 women were culture-negative, 11 women GBS culture-positive at 24 weeks only, 21 women GBS culture-positive at 36 weeks only and 15 women GBS culture-positive at both timepoints on Brilliance GBS agar. V3-V4 16S rRNA gene amplicon sequencing demonstrated that in women that were GBS culture-positive at 36 weeks gestation only, G. vaginalis was significantly more abundant at 24-weeks' gestation despite a lack of significant changes in community richness between the 24- and 36-week samples. The vaginal microbial communities of women persistently colonised with GBS, had a significantly higher abundance of Lactobacillus iners, compared to other groups where L. crispatus, L. gasseri or L. jensenii were dominant. We have characterised the vaginal microbial community composition during pregnancy in relation to GBS colonisation status, in a longitudinal study for the first time. The most interesting finding was that in women that were persistently colonised with GBS throughout pregnancy, there was a significant increase in L. iners and significant reduction in L. crispatus abundance. Given the lack of detail of the role that the vaginal microbial community plays in GBS colonisation in the literature, it is imperative that the relationship between L. iners and GBS in this unique environmental niche is further investigated.

Prevalence of antibiotic resistance genes in different drinking water treatment processes in a northwest Chinese city.

Antibiotic resistance genes (ARGs) are an emerging issue which are receiving increasing concerns in drinking water safety. However, the factors (e.g. treatment processes and water quality) affecting the removal efficiency of ARGs in the drinking water treatment plants (DWTPs) is still unclear. This work investigated the ARG profiles in each treatment process of two DWTPs located in a northwest Chinese city. The results showed that tetracycline and sulfonamide resistance genes were predominant among the 14 targeted ARGs. After the treatment, the Z water treatment plant which demonstrated a higher removal rate of ARGs (ranging from 50 to 80%), compared to the S plant (50-75%). And the average removal rate of tetracycline resistance genes (tetA, tetG, tetQ, tetX) was about 49.18% (S plant) and 67.50% (Z plant), as well as the removal rate of 64.2% and 72.9% for sulfonamide resistance (sul1 and sul2) at S and Z water plants, respectively. It was found that the relative abundance of main microbial communities (such as Bacteroidota, Actinobacteria, Verrucomicrobiota, Roseomonas), α-diversity index, as well as the abundance of pathogenic bacteria were all significantly reduced after different treatment processes. Network co-occurrence analysis revealed that Methylocystis possibly was the potential host for most ARGs, and sul1 was found across a broad spectrum of microorganisms in the drinking water environment. Adonis analysis showed that heavy metals and microbial communities explain solely 44.1% and 35.7% of variances of ARGs within DWTPs. This study provides insights into the contamination status and removal efficiencies of ARGs in DWTPs, offering valuable references for future studies on ARG removal, propagation, and diffusion patterns in drinking water treatment.

Effects of biochar and compost on the abundant and rare microbial communities assembly and multifunctionality in pesticide-contaminated soil under freeze‒thaw cycles

Biochar and compost are effective ways to improve soil quality and reduce pesticide pollution. However, the effects of them on the abundant and rare microbial communities in freeze‒thaw soil need to be further clarified. Therefore, this study took biochar, compost, and their combination as examples to explore their effects on the abundant and rare microbial communities and multifunctionality in glyphosate, imidacloprid and pyraclostrobin contaminated soil under freeze‒thaw cycles. We found that freeze‒thaw cycles enhanced the functional groups and surface aromaticity of biochar and compost, thereby improving the adsorption capacity. Biochar and compost reduced the concentration and half-life of three pesticides and enhanced the degradation function of rare taxa in soil. Biochar and compost improved the structure composition and co-occurrence relationship of abundant and rare taxa. Meanwhile, the assembly processes of abundant and rare sub-communities were mainly driven by stochastic processes and the Combined treatment promoted the transition from dispersal limitation to homogenizing dispersal and homogeneous selection. Moreover, the Combined treatment significantly improved the multifunctionality before and after freezing and thawing by increasing the diversity of rare taxa and assembly processes. The results provide new insights for farmland soil remediation in seasonal frozen areas, especially the soil functional cycle of abundant and rare microorganisms.

Effects of nano-bubble water on anaerobic co-digestion of cabbage waste and cow manure under mesophilic and thermophilic conditions

ABSTRACT The impact of four nano-bubble water (NBW) additions on the hydrolysis rate, methane yield, and microbial community of co-digestion of cabbage waste (CW) and cow manure (CM) under mesophilic and thermophilic conditions were investigated. Adding NBW under mesophilic conditions promoted hydrolysis, and the highest soluble chemical oxygen demand of the mesophilic digesters with the addition of CO2-NBW increased by 15.86%. Methane yield in the mesophilic digesters with Air-NBW and CO2-NBW increased by 17.54% and 14.72%, respectively. Moreover, the addition of NBW further accelerated the methane yield rate under mesophilic conditions. Due to the influence of thermophilic temperature, the impact of NBW addition on hydrolysis, methane yield, and methane yield rate in the thermophilic digesters did not differ significantly from the control. The addition of Air-NBW and N2-NBW in the thermophilic digesters resulted in only marginal increases in methane yield, by 1.09% and 5.61%, respectively. NBW addition enhanced both the abundance and diversity of microbial communities in both mesophilic and thermophilic digesters. The addition of NBW represents a promising technological advancement for enhancing the efficiency of anaerobic co-digestion of CW and CM.

Assembly and functional profile of rhizosphere microbial community during the Salix viminalis-AMF remediation of polycyclic aromatic hydrocarbon polluted soils

Arbuscular mycorrhizal fungi (AMF) are positive to the phytoremediation by improving plant biomass and soil properties. However, the role of AM plants to the remediation of polycyclic aromatic hydrocarbons (PAHs) is yet to be widely recognized, and the impact of AM plants to indigenous microbial communities during remediation remains unclear. In this work, a 90-day study was conducted to assess the effect of AMF-Salix viminalis on the removal of PAHs, and explore the impact to the microbial community composition, abundance, and function. Results showed that AMF-Salix viminalis effectively enhanced the removal of benzo[a]pyrene, and enriched more PAH-degrading bacteria, consisting of Actinobacteria, Chloroflexi, Sphingomonas, and Stenotrophobacter, as well as fungi including Basidiomycota, Pseudogymnoascus, and Tomentella. For gene function, AM willow enhanced the enrichment of genes involved in amino acid synthesis, aminoacyl-tRNA biosynthesis, and cysteine and methionine metabolism pathways. F. mosseae inoculation had a greater effect on alpha- and beta-diversity of microbial genes at 90 d. Additionally, AMF inoculation significantly increased the soil microbial biomass carbon and organic matter concentration. All together, the microbial community assembly and function shaped by AM willow promoted the dissipation of PAHs. Our results support the effectiveness of AM remediation and contribute to reveal the enhancing-remediation mechanism to PAHs using multi-omics data.

Influence of thinning on carbon storage mediated by soil physicochemical properties and microbial community composition in large Chinese fir timber plantation

BackgroundThinning practices are useful measures in forest management and play an essential role in maintaining ecological stability. However, the effects of thinning on the soil properties and microbial community in large Chinese fir timber plantations remain unknown. The purpose of this study was to investigate the changes in soil physicochemical properties and microbial community composition in topsoil (0–20 cm) under six different intensities (i.e., 300 (R300), 450 (R450), 600 (R600), 750 (R750) and 900 (R900) trees per hectare and 1650 (R1650) as a control) in a large Chinese fir timber plantation.ResultsCompared with the CK treatment, thinning significantly altered the contents of soil organic carbon (SOC) and its fractions but not in a linear fashion; these indicators were highest in R900. In addition, thinning did not significantly affect the soil microbial community diversity indices but significantly affected the relative abundance of the core microbial community. Proteobacteria, Acidobacteria, and Actinobacteria were the dominant bacterial phyla; the relative abundances of Proteobacteria and Acidobacteria were highest in R900, and that of Actinobacteria was lowest in R900. The dominant fungal phyla were Ascomycota, Basidiomycota and Mucoromycota; the relative abundance of Ascomycota was lowest in R900, and that of Mucoromycota was highest in R900. The fungal microbial community composition was more sensitive than the bacterial community composition. The activity of the carbon-cycling genes was not linearly correlated with thinning, and the abundance of C-cycle genes was highest in R900.ConclusionsThese findings are important because they show that SOC and its fractions and the abundance of the soil microorganism community in large Chinese fir timber plantations can be significantly altered by thinning, thus affecting the capacity for carbon storage. These results may advance our understanding of how the density of large timber plantations could be modified to promote soil carbon storage.

Remediation of As, Sb, and Pb co-contaminated mining soils by using Fe/C based solid wastes: Synergistic effects and field applications

Existing passivators for mining soil remediation suffer from high-costs and detriment to soil health. Here we reported the iron-carbon (Fe/C) based passivators (high-Fe/C, mid-Fe/C, and low-Fe/C) prepared by composing of high-Fe steel slag, high-C coal fly ash and FeSO4 for the remediation of As, Sb, and Pb co-contaminated mining soil. High-Fe/C, and mid-Fe/C addition (5 % dosage) for 30 days decreased soil available As, Sb, and Pb content by 85.5–87.3 %, 58.3–71.2 %, and 55.3–65.7 %, respectively, with only slight degradation of stabilization efficiency with 210 days. Moreover, the labile fractions of As, Sb and Pb were transformed to residual state. After high-Fe/C and mid-Fe/C amendment, the relative abundance of microbial community (bacteria and fungi) and soil fertility were enhanced. Facilitated by the Fe/C micro-electrolysis effect, As, Sb and Pb species were well passivated via adsorption with C-containing functional groups, and precipitation (Fe-As/Sb and Ca-Sb) mechanisms. Noteworthy, the increased soil organic matter (OM), cation exchange capacity (CEC) and microbial activity also enhanced the stabilization of As, Sb, and Pb. Field application results demonstrated that the stabilization efficiency of available As and TCLP-As/Sb/Pb was over 80 % after mid-Fe/C amendment. Fe/C based solid wastes hold the potential for being cost-effective in the remediation of mining soil while achieving large-scale utilization of solid wastes.