Abundance Of Functional Genes Research Articles

Nanoparticles of Zinc Oxides Mitigated N2O Emissions in Tea Plantation Soil

The excessive application of nitrogen in tea plantations leads to severe soil acidification and N2O emission boosting. To promote sustainable agriculture, nanoparticles (NPs) have emerged as alternative fertilizers, but their effects on soil nitrification and greenhouse gas emissions in tea plantations remain unclear. In this study, the effects of NP type (ZnO-NPs and Fe2O3-NPs) and dose (0, 1, 10, and 100 mg·kg⁻1) on soil N2O emissions were investigated via a lab incubation trial. Soil pH, ammonium, and nitrate changes were also monitored during the incubation period. The abundance of functional genes related to nitrification and denitrification processes was analyzed as well. The results showed that ZnO-NPs led to a decrease in N2O emissions. The reduction effect was stronger with increasing dose and resulted in a 33% reduction at an addition rate of 100 mg·kg−1. The cumulative N2O emissions had significantly positive correlations with NH4+-N and NO3−-N. ZnO-NP addition showed a significantly negative effect on Ammonia-Oxidizing Archaea (AOA) but a positive effect on Ammonia-Oxidizing Bacteria (AOB) gene abundance. In contrast, Fe2O3-NPs showed an insignificant impact on N2O emissions and soil N content, as well as nitrification–denitrification gene abundance, regardless of different doses. These results imply that the application of ZnO-NPs may inhibit nitrification through the retarding of AOA activity. This study provided us with a potential practice to reduce N2O emissions in tea plantations by applying ZnO-NPs, but the efficiency of this reduction needs further examination under ambient conditions before field application.

Spatiotemporal distributions of dissolved N2O concentration, diffusive N2O flux and relevant functional genes along a coastal creek in southeastern China

Increased anthropogenic input of nitrogen into coastal creeks make them potential hotspots for N2O production and emission, but they are often excluded from regional and global N2O budget, and high-resolution sampling is required to characterize the strong spatiotemporal heterogeneity within the creeks. In this study, we analyzed the N2O concentration and diffusive N2O flux within a coastal creek in the Shanyutan Wetland in southeastern China in high spatial resolution across four seasons. Ancillary hydrographical variables and N2O-related functional gene abundances were also measured. Results showed that the creek was consistently oversaturated in N2O, at a seasonal average of 5.6–14.2 nmol/L, relative to the overlying atmosphere. The spatial distribution of N2O followed the gradient of nitrogenous substrate but was inversely related to the salinity gradient, and the coefficient of spatial variation of N2O flux ranged from 66.3 % to 116.5 %. Nitrite reduction (based on nirK and nirS gene abundances) and ammonia oxidation (AOA amoA and AOB amoA) appeared to outpace N2O reduction (nosZ I and nosZ II), and these were the main microbial processes that determined N2O concentration and flux. Both N2O concentration and flux were substantially higher in autumn than those in the other seasons, but that did not appear to be related to precipitation. N2O diffusive flux from the creek averaged 322.2 nmol m−2 h−1, which was over 2 times higher than the global average for lakes and reservoirs. Our results highlight that coastal creeks are strong atmospheric N2O sources with high spatiotemporal variability.

Dynamics of microbial community and functional genes during bioremediation of PAHs-contaminated soil by two biostimulants

Biostimulation is a favored approach in bioremediation strategies for polycyclic aromatic hydrocarbons (PAHs). However, the addition of some biostimulants can instead be counterproductive to the soil. In this study, rhamnolipid and leaf litter were added as aids to PAHs biodegradation in soil. Quantitative Real-time PCR (qPCR) and 16 S ribosomal RNA (16 S rRNA) techniques were used to investigate the structural-functional response of soil microbial communities and changes in PAHs functional genes during 82 days of the degradation process. The study reveals that rhamnolipid and leaf litter increase the degradation rate of Benzo(a)pyrene by 20.49% and 11.64%, respectively, while having little effect on the degradation rate of phenanthrene. During the degradation process, each biostimulant increases the number of different bacterial genera capable of degrading PAHs, which influences both the structure and function of the microbial community and alters microbial diversity. Additionally, functional gene abundance was enhanced during degradation and showed an inverse relationship with residual PAHs concentration in the soil. These results indicate that different biostimulants have varying effects on microorganisms. This study enhances the understanding of useing of two biostimulants to degrade soil PAHs.

Characteristics of Epiphytic Bacterial Community on Submerged Macrophytes in Water Environment Supplemented with Reclaimed Water

Biofilms attached to submerged macrophytes play an important role in improving the water quality of the water environment supplemented with reclaimed water. In order to explore the effects of reclaimed water quality and submerged macrophyte species on the characteristics of an epiphytic bacterial community, different types of submerged macrophytes were selected as research objects in this study. 16S rRNA high-throughput sequencing technology was used on the epiphytic bacteria and the surrounding environmental samples to analyze the bacterial community structure and functional genes. The results showed that approximately 20%-35% of the nitrogen and phosphorus nutrients were absorbed and utilized in the water environment supplemented with reclaimed water. However, the COD, turbidity, and chroma of the downstream water were significantly increased. The bacterial community of the biofilms attached to submerged macrophytes was significantly different from that in the surrounding environment (soil, sediment, and water body) and in the activated sludge that was treated by reclaimed water. In terms of bacterial community diversity, the richness and diversity were significantly lower than those of soil and sediment but higher than those of plankton bacteria in water. In terms of bacterial community composition, dominant genera and corresponding abundances were also different from those of other samples. The main dominant bacterial genera were Sphingomonas, Aeromonas, Pseudomonas, and Acinetobacter, accounting for 7%-40%, respectively. Both macrophyte species and the quality of reclaimed water (BOD5, TN, NH4+-N, and TP) could affect the bacterial community. However, the effect of water quality of the bacterial community was greater than that of macrophytes species. Additionally, the quality of reclaimed water also affected the abundance of functional genes in the bacterial community, and the relative abundance of nitrogen and phosphorus cycling functional genes was higher in areas with higher nitrogen and phosphorus concentrations.

Changes in nitrogen functional genes and microbial populations in soil profiles of a peatland under different burning regimes

Microbes in peatlands provide key ecosystem services and are essential for their role in biogeochemical cycling. Prescribed burning is a common aspect of peatland management but the practice has been criticized for being ecologically damaging due to its effect on the biological, chemical and physical properties of the soil. It is poorly understood how burning affects soil N cycling and previous studies have focused predominantly on the topsoil whilst giving less attention to changes with soil depth. This study investigated the changes of microbial abundance (bacterial 16S rRNA and fungal 18S rRNA) and the abundance of N-cycle functional genes involved in archaeal and bacterial ammonia oxidation (amoA-AOA and amoA-AOB), denitrification (nirK and nirS), N fixation (nifH) and organic N decomposition (chiA) in soil profiles across three burn treatments on a managed peatland landscape (a ‘non-burn’ since 1954 control, 20 years burn interval, and 10 years burn interval). Our results indicate the abundance of bacterial 16S rRNA and fungal 18 s rRNA was affected by burn treatment, soil depth and their interaction and were greater in the non-burn control plots. The abundances of amoA-AOA, amoA-AOB, and nifH were significantly higher in the topsoil of the non-burn control plots while the abundance of nirK was higher in plots subject to short rotation and long rotation burn regimes but also decreased significantly with soil depth. The abundance of nirS was not affected by burn treatment or soil depth. ChiA abundance was affected by burn treatment, soil depth and their interaction. N-cycle functional gene abundance responded differently to environmental factors associated with prescribed burning and varied with soil depth. These findings suggest that the practice of burning affects microbial N turnover potential and provides an important insight into the soil N-cycling potential of peatlands under different burning regimes.

Insight into effect of polyethylene microplastic on nitrogen removal in moving bed biofilm reactor: Focusing on microbial community and species interactions

Microplastics (MPs) pollution has emerged as a global concern, and wastewater treatment plants (WWTPs) are one of the potential sources of MPs in the environment. However, the effect of polyethylene MPs (PE) on nitrogen (N) removal in moving bed biofilm reactor (MBBR) remains unclear. We hypothesized that PE would affect N removal in MBBR by influencing its microbial community. In this study, we investigated the impacts of different PE concentrations (100, 500, and 1000 μg/L) on N removal, enzyme activities, and microbial community in MBBR. Folin–phenol and anthrone colorimetric methods, oxidative stress and enzyme activity tests, and high-throughput sequencing combined with bioinformation analysis were used to decipher the potential mechanisms. The results demonstrated that 1000 μg/L PE had the greatest effect on NH4+-N and TN removal, with a decrease of 33.5 % and 35.2 %, and nitrifying and denitrifying enzyme activities were restrained by 29.5–39.6 % and 24.6–47.4 %. Polysaccharide and protein contents were enhanced by PE, except for 1000 μg/L PE, which decreased protein content by 65.4 mg/g VSS. The positive links of species interactions under 1000 μg/L PE exposure was 52.07 %, higher than under 500 μg/L (51.05 %) and 100 μg/L PE (50.35 %). Relative abundance of some metabolism pathways like carbohydrate metabolism and energy metabolism were restrained by 0.07–0.11 % and 0.27–0.4 %. Moreover, the total abundance of nitrification and denitrification genes both decreased under PE exposure. Overall, PE reduced N removal by affecting microbial community structure and species interactions, inhibiting some key metabolic pathways, and suppressing key enzyme activity and functional gene abundance. This paper provides new insights into assessing the risk of MPs to WWTPs, contributing to ensuring the health of aquatic ecosystems.

Impact of diversified cropping systems and fertilization strategies on soil microbial abundance and functional potentials for nitrogen cycling

Diversified cropping systems and fertilization strategies were proposed to enhance the abundance and diversity of the soil microbiome, thereby stabilizing their beneficial services for maintaining soil fertility and supporting plant growth. Here, we assessed across three different long-term field experiments in Europe (Netherlands, Belgium, Northern Germany) whether diversified cropping systems and fertilization strategies also affect their functional gene abundance. Soil DNA was analyzed by quantitative PCR for quantifying bacteria, archaea and fungi as well as functional genes related to nitrogen (N) transformations; including bacterial and archaeal nitrification (amoA-bac,arch), three steps of the denitrification process (nirK, nirS and nosZ-cladeI,II) and N2 assimilation (nifH), respectively. Crop diversification and fertilization strategies generally enhanced soil total carbon (C), N and microbial abundance, but with variation between sites. Overall effects of diversified cropping systems and fertilization strategies on functional genes were much stronger than on the abundance of bacteria, archaea and fungi. The legume-based cropping systems showed great potential not only in stimulating the growth of N-fixing microorganisms but also in boosting downstream functional potentials for N cycling. The sorghum-based intercropping system suppressed soil ammonia oxidizing prokaryotes. N fertilization reduced the abundance of nitrifiers and denitrifiers except for ammonia-oxidizing bacteria, while the application of the synthetic nitrification inhibitor DMPP combined with mineral N reduced growth of both ammonia-oxidizing bacteria and archaea. In conclusion, this study demonstrates a strong impact of diversified agricultural practices on the soil microbiome and their functional potentials mediating N transformations.

Salt stimulates sulfide−driven autotrophic denitrification: Microbial network and metagenomics analyses

Sulfur autotrophic denitrification (SADN) is a promising biological wastewater treatment technology for nitrogen removal, and its performance highly relies on the collective activities of the microbial community. However, the effect of salt (a prevailing characteristic of some nitrogen−containing industrial wastewaters) on the microbial community of SADN is still unclear. In this study, the response of the sulfide−SADN process to different salinities (i.e., 1.5 % salinity, 0.5 % salinity, and without salinity) as well as the involved microbial mechanisms were investigated by molecular ecological network and metagenomics analyses. Results showed that the satisfactory nitrogen removal efficiency (>97 %) was achieved in the sulfide−SADN process (S/N molar ratio of 0.88) with 1.5 % salinity. In salinity scenarios, the genus Thiobacillus significantly proliferated and was detected as the dominant sulfur−oxidizing bacteria in the sulfide−SADN system, occupying a relative abundance of 29.4 %. Network analysis further elucidated that 1.5 % salinity had enabled the microbial community to form a more densely clustered network, which intensified the interactions between microorganisms and effectively improved the nitrogen removal performance of the sulfide−SADN. Metagenomics sequencing revealed that the abundance of functional genes encoding for key enzymes involved in SADN, dissimilatory nitrate reduction to ammonium, and nitrification was up−regulated in the 1.5 % salinity scenario compared to that without salinity, stimulating the occurrence of multiple nitrogen transformation pathways. These multi−paths contributed to a robust SADN process (i.e., nitrogen removal efficiency >97 %, effluent nitrogen <2.5 mg N/L). This study deepens our understanding of the effect of salt on the SADN system at the community and functional level, and favors to advance the application of this sustainable bioprocess in saline wastewater treatment.

N2O emission in temperate seagrass meadows: Fluxes, pathway and molecular mechanism

Seagrass meadows act as filters for nitrogen in coastal areas, but whether they are a source or sink for N2O has been still controversy. Additionally, the production pathways of N2O as well as the microbial driving mechanism in seagrass meadows are seldom reported. In this study, the air-sea fluxes, sediment release potential, and production pathway of N2O in a temperate Zostera marina and Z. japonica mixed meadow were investigated by using gas chromatography and 15N isotopic tracing methods. The qPCR and metagenome sequencing were used to compare the difference in functional gene abundance and expression between seagrass vegetated and non-grass sediments. The results showed that the N2O air-sea fluxes in the meadow ranged from −1.97 to −1.77 nmol m⁻2 h⁻1, which was slightly lower in the seagrass region than in the adjacent bare region. Seagrass sediment N2O release potential dramatically increased after warming and nitrogen enrichment treatments. Heterotrophic nitrification was firstly investigated in seagrass meadows, and the process (26.80%–62.41%) and denitrification (37.55%–72.83%) contributed significantly to N2O production in the meadow, affected deeply by sediment organic content, while the contribution of autotrophic nitrification can be neglected. Compared with the bare sediments, the ammonia monooxygenase genes amoA, amoB and amoC, and nitrite oxidoreductase genes nxrA and nxrB, as well as nitrite reductase gene nirS and nitric oxide reductase gene norB were down-regulated, while the nitrous oxide reductase gene nosZ was up-regulated in the seagrass sediments, explaining less N2O emission in seagrass regions from the perspective of molecular. The nosZII-bearing bacteria like Bacteroidia, Polyangia, Anaerolineae, and Verrucomicrobiae could play important roles in N2O reduction in the seagrass meadow. The result is of great significance for highlighting the ability of seagrass meadows to mitigate climate changes.

Light grazing reduces the abundance of carbon cycling functional genes by decreasing oligotrophs microbes in desert steppe

Understanding the functional genes of microorganisms involved in carbon cycling processes can link microbial community structure to potential ecological functions. However, the effects of grazing on the relationship between carbon cycling functional genes and soil environment need to be further investigated as a global land use activity. A replicated sheep grazing platform was established in Northern China in 2004 with four different stocking rates: no grazing (0 sheep ha−1 month−1), light grazing (0.15 sheep ha−1 month−1), moderate grazing (0.30 sheep ha−1 month−1), and heavy grazing (0.45 sheep ha−1 month−1). To examine the effects of biotic and abiotic factors on microbial species and functional gene abundance, we collected soil samples after 17 years of grazing analyzed for the abundance of microbial communities, the abundance of carbon function genes, plant carbon input and soil environmental factors. We found that light grazing reduced carbon cycling functional genes compared to no grazing (fencing). With increasing grazing intensity, the absolute abundance of functional genes increased. Changes in microbial species abundance were mainly responsible for the changes in the structure of carbon cycling functional genes. Our results emphasize that elucidating how grazing affects the carbon cycling functional genes through the effects of plant carbon inputs and the environment, and the interactions between them, will provide important information for understanding carbon cycling processes in grassland ecosystems.

Different microbial functional traits drive bulk and rhizosphere soil phosphorus mobilization in an alpine meadow after nitrogen input

Enhanced nitrogen (N) input is expected to influence the soil phosphorus (P) cycling through biotic and abiotic factors. Among these factors, soil microorganisms play a vital role in regulating soil P availability. However, the divergent contribution of functional microorganisms to soil P availability in the rhizosphere and bulk soil under N addition remains unclear. We conducted an N addition experiment with four N input rates (0, 5, 10, and 15 g N m−2 year−1) in an alpine meadow over three years. Metagenomics was employed to investigate the functional microbial traits in the rhizosphere and bulk soil. We showed that N addition had positive effects on microbial functional traits related to P-cycling in the bulk and rhizosphere soil. Specifically, high N addition significantly increased the abundance of most microbial genes in the bulk soil but only enhanced the abundance of five genes in the rhizosphere soil. The soil compartment, rather than the N addition treatment, was the dominant factor explaining the changes in the diversity and network of functional microorganisms. Furthermore, the abundance of functional microbial genes had a profound effect on soil available P, particularly in bulk soil P availability driven by the ppa and ppx genes, as well as rhizosphere soil P availability driven by the ugpE gene. Our results highlight that N addition stimulates the microbial potential for soil P mobilization in alpine meadows. Distinct microbial genes play vital roles in soil P availability in bulk and rhizosphere soil respectively. This indicates the necessity for models to further our knowledge of P mobilization processes from the bulk soil to the rhizosphere soil, allowing for more precise predictions of the effects of N enrichment on soil P cycling.

Exposure of polyethylene microplastics affects sulfur migration and transformation in anaerobic system

Polyethylene (PE) microplastic, which is detected in various environmental media worldwide, also inevitably enters wastewater treatment plants, which may have an impact on anaerobic processes in wastewater treatment. In this work, the effect of PE microplastics on anaerobic sulfur transformation was explored. Experimental results showed that PE microplastics addition at 0.1%− 0.5% w/w promoted H2S production by 14.8%−27.4%. PE microplastics enhanced the release of soluble organic sulfur and inorganic sulfate, and promoted the bioprocesses of organosulfur compounds hydrolysis and sulfate reduction. Mechanism analysis showed that PE microplastics increased the content of electroactive components (e.g., protein and humic acids) contained in extracellular polymeric substances (EPS). In particular, PE microplastics increased the proportion and the dipole moment of α-helix, an important component involved in electron transfer contained in extracelluar protein, which provided more electron transfer sites and promoted the α-helix mediated electron transfer. These enhanced the direct electron transfer ability of EPSs, which might explain why PE microplastics facilitated the bioprocesses of organosulfur compounds hydrolysis and sulfate reduction. Correspondingly, metagenomic analysis revealed that PE microplastics increased the relative abundance of S2- producers (e.g., Desulfobacula and Desulfonema) and the relative abundance of functional genes involved in anaerobic sulfur transformation (e.g., PepD and cysD), which were beneficial to H2S production in anaerobic system.

Organic management pattern improves microbial community diversity and alters microbial network structure in karst tea plantation

Soil microbiomes play a crucial role in enhancing plant growth, health, and overall agricultural productivity. Nevertheless, the influence of distinct agricultural management practices on the microbial diversity and community structure within tea (Camellia sinensis) plantations has remained enigmatic. This study postulates that organic agricultural management models can enhance microbial diversity and optimise the microbial community structure within tea plantations, indirectly augmenting soil fertility and tea quality. We employed metagenome technology and conducted molecular ecological network analysis to explore the impact of organic management, pollution-free management, and conventional management on the microbial network structure of tea plantation soil in Weng'an County in the southwestern karst region. Soils subjected to organic management exhibited a higher relative abundance of soil microbial and carbohydrate-active enzyme functional genes than those subjected to other management regimes. Additionally, the relative abundance and diversity of dominant bacteria and keystone species were notably higher under organic management than under the other management regimes. Correlation analysis showed that soil microorganisms were closely related to soil fertility and tea quality, respectively. One-way analysis of variance and the structural equation modelling results showed significant variability in soil fertility under the three agricultural management modes and that soil fertility and soil microbial diversity had a direct impact on tea quality (P > 0.05). In conclusion, this study underscores the profound impact of management modes on microbial diversity and community structure within tea plantations. These management practices alter the soil microbial network structure and potential function, ultimately regulating the microecological dynamics of the soil community in tea plantations.

Turning alkalinity deficiency-induced metabolic disorder into an opportunity for promoting granulation and enhancing heat generation

Shortage of alkalinity is a common problem in treating low carbon/nitrogen (C/N) wastewater and industrial influents. It negatively affects system stability and efficiency, but its positive effects remain unclear. To address this issue, insufficient (R1: 400 mg CaCO3/L) and sufficient alkalinity (R2: 750 mg CaCO3/L) levels were established in our study, where R1 served as the experimental group and R2 as the control group. In the experimental group, alkalinity deficiency deteriorated the nitrification and phosphorus removal process by reducing the abundance of functional microbes (Nitrosomonas, genus ammonia-oxidizing bacteria, AOB, and Dechloromonas, genus polyphosphate-accumulating organisms, PAOs) and genes (hao). At the same time, the alkalinity deficiency enriched slow-growing functional microbes (Candidatus_Competibacter, genus glycogen-accumulating organisms, GAOs) and key genes (nirK, norB, nosZ, acnB, fumA, fumB) increased the content of extracellular polymeric substances (EPS) and the ratio of protein to polysaccharide (PN/PS). By day 113, over 87 % of the particles were larger than 200 μm, and complete granulation was achieved. Microbial energy metabolism further indicated that alkalinity deficiency diverted some energy to non-growth metabolism, thereby enhancing microbial heat generation. Our results highlight an innovative approach, using the setting of insufficient alkalinity conditions to improve heat recovery and address the challenges of WWTPs. These research findings are in favor of wastewater treatment plants seeking to meet multiple sustainable objectives, including improving water quality, saving footprint, and maximizing energy recovery.

Wheat straw and microbial inoculants have an additive effect on N2O emissions by changing microbial functional groups

AbstractStraw‐decomposing microbial inoculants (MIs) have been increasingly applied to straw‐amended soils. However, the interactive effects and underlying microbial mechanisms of straw and decomposing MIs on nitrous oxide (N2O) emissions remain unclear. Here, a pot experiment with an Aquic Inceptisol was conducted to determine soil N2O emissions and the abundance and composition of microbial functional genes under six amendments: wheat straw (W), Bacillus subtilis MI (B), Streptomyces rochei MI (S), a combination of straw and B. subtilis MI (WB), a combination of straw and S. rochei MI (WS), and a control without wheat straw or MI (C). Compared with the control, the amendments of straw, decomposing MIs, and their combinations decreased soil N2O emissions by 43%, 22–30%, and 46–60%, respectively. Mechanistically, the positive relationship between ammonia‐oxidizing bacteria (AOB) and soil potential nitrification rate (PNR), along with decreased AOB abundance (−36%) following straw and decomposing MI amendments, further suggested that AOB predominated soil nitrification and was responsible for the suppressed nitrification. In addition, straw amendment increased nirK gene abundance (by 48%) and potential denitrification rate (by 11%), while the increase in nosZI gene abundance (+25%) involved in N2O consumption contributed to the decrease in N2O emissions. Overall, the additive effect of straw and decomposing MIs on soil N2O emissions was associated with two amendment‐induced changes in the abundance and composition of AOB and straw‐stimulated the abundance of the nosZI gene. Our results revealed the potential for mitigating N2O emissions following the amendments of straw and MI by influencing soil N2O‐related microbial groups.

Carbon-ferrous-sulfur mixotrophic denitrification driven by polyferric sulfate (PFS)-conditioned recovered sludge fermentation liquor enhanced nitrogen removal in woolen wastewater

Reducing pollution and carbon emissions synergistically in wastewater treatment is an important part of carbon neutralization. Recycling carbon sources (CSs) in sludge to refeed denitrification has been considered a promising sustainable pathway, but it is limited by CSs purification and recovery. This study evaluated the effects of polyferric sulfate (PFS), polyaluminum chloride (PAC), and polyacrylamide (PAM) conditioning on fermentation CSs recovery and denitrification efficiency. Results indicated PFS-conditioned recovered fermentation liquor showed higher denitrification efficiency for woolen wastewater. CSs recovery test showed that PFS conditioning improved the purity of high-bioavailability CSs by depleting fewer short-chain fatty acids (SCFAs) and removing more total nitrogen (TN), total phosphorus (TP), and humic acids. Under the 0.05 g/gTSS PFS conditioning and recovery, the preservation of soluble chemical oxygen demand (SCOD) and SCFAs were 71.00 % and 84.36 %, respectively, and the nitrate degradation rate achieved 3.19 mgNO3−·h−1·gVSS−1. Importantly, Fe(III) dissociated from PFS oxidized the S2− from woolen wastewater, and generated Fe(II) and S0, which composed a synergistic electron donor system together with SCFAs. They constituted a mixotrophic denitrification dominated by heterotrophic denitrification and reinforced by ferrous and sulfur-autotrophic denitrifications, which contributed 69.56, 17.72, and 12.72 % to nitrogen removal, respectively. In addition, the refeeding of PFS-conditioned recovered fermentation liquor promoted the proliferation of microorganisms involved in iron/sulfur autotrophic denitrification and the abundance of denitrification functional genes, especially the napA, nirS, cnorB, qnorB, and nosZ, forming an efficient Carbon-Ferrous-Sulfur hybrid denitrifiers community to enhanced nitrogen removal from woolen wastewater.

Long-term evaluating the strengthening effects of iron-carbon mediator for coking wastewater treatment in EGSB reactor

Coking wastewater (CWW) treatment is difficult due to its complex composition and high biological toxicity. Iron-carbon mediators was used to enhance the treatment of CWW through iron-carbon microelectrolysis (ICME). The results indicated that the removal rate of COD and phenolic compounds were enhanced by 24.1% and 23.5%, while biogas production and methane content were promoted by 50% and 7%. Microbial community analysis indicated that iron-carbon mediators had a transformative impact on the reactor's performance and dependability by enriching microorganisms involved in direct and indirect electron transfer, such as Anaerolineae and Methanothrix. The mediator also produced noteworthy gains in LB-EPS and TB-EPS, increasing by roughly 109.3% and 211.6%, respectively. PICRISt analysis demonstrated that iron-carbon mediators effectively augment the abundance of functional genes associated with metabolism, Citrate cycle, and EET pathway. This study provides a new approach for CWW treatment.

Unearthing the soil-borne microbiome of land plants.

Plant-soil biodiversity interactions are fundamental for the functioning of terrestrial ecosystems. Yet, the existence of a set of globally distributed topsoil microbial and small invertebrate organisms consistently associated with land plants (i.e., their consistent soil-borne microbiome), together with the environmental preferences and functional capabilities of these organisms, remains unknown. We conducted a standardized field survey under 150 species of land plants, including 58 species of bryophytes and 92 of vascular plants, across 124 locations from all continents. We found that, despite the immense biodiversity of soil organisms, the land plants evaluated only shared a small fraction (less than 1%) of all microbial and invertebrate taxa that were present across contrasting climatic and soil conditions and vegetation types. These consistent taxa were dominated by generalist decomposers and phagotrophs and their presence was positively correlated with the abundance of functional genes linked to mineralization. Finally, we showed that crossing environmental thresholds in aridity (aridity index of 0.65, i.e., the transition from mesic to dry ecosystems), soil pH (5.5; i.e., the transition from acidic to strongly acidic soils), and carbon (less than 2%, the lower limit of fertile soils) can result in drastic disruptions in the associations between land plants and soil organisms, with potential implications for the delivery of soil ecosystem processes under ongoing global environmental change.

Altered microbial diversity, interaction pattern, and nitrogen transformation processes response to different iron addition amounts in constructed wetlands

Microbial interactions affect the biogeochemical cycles, pollutant transformation, and stable operation of constructed wetlands (CWs), and these interaction networks are vulnerable to environmental stress. Iron (Fe)-based CWs have been demonstrated as an intensified nitrogen (N) removal system, however, whether and how the addition of Fe, an exogenous environmental stressor, and its amount affect the microbial interactions and functions are poorly understood, which inevitably determine the stability and sustainability of CW system. Herein, we demonstrated that higher Fe addition could effectively improve the stability and sustainability of the CW system by regulating the diversity and interactions of the microbial communities rather than the relative abundance of functional genes. Specifically, low Fe-addition reduced the complexity and robustness of microbial network and the number of keystone taxa, while the high Fe-addition CWs showed the opposite pattern. In CWs with low Fe-addition, N-Fe cycles were accomplished by increasing competition represented by a high proportion of negative links between the same function, whereas increased cooperation was observed in CWs with high Fe-addition. Moreover, Fe addition shaped divergent N transformation processes, with denitrification-dissimilatory nitrate reduction to ammonium (DNRA) dominating in control group, and nitrification-partial denitrification/anammox (PD/A) dominating in Fe-based CWs, and the intensity of nitrification-PD/A increased with the addition amount of Fe. Our study provided insights into the potential ways to improve the stability and sustainability of Fe-CWs for intensified pollutant elimination, which would be valuable to advance the design, sustainable operation, and application of Fe-CWs.

Green manuring alters reactive N losses and N pools in arable soils: A meta-regression study

Green manuring is a conservation agricultural practice that improves soil quality and crop yield. However, increasing the active nitrogen (N) and carbon (C) pools during green manure (GM) amendment may accelerate soil N transformation and stimulate N loss. Previous studies have reported the effects of cover crop incorporation on N2O emission; however, the driving mechanisms and other N losses remain unclear. Therefore, we conducted a comprehensive meta-analysis of 109 published articles (517 paired observations) to clarify the effects of GM amendment on soil reactive N (Nr) losses (N2O emissions, NH3 volatilization, and N leaching and runoff), N pools, and N cycling functional gene abundance. The results showed that green manuring increased soil microbial biomass N (MBN) and NO3−-N concentrations and stimulated N2O emission but significantly lowered N leaching and yield-scaled NH3 volatilization. Practices of green manuring made a dominant contribution to the variation in N2O emissions and NH3 volatilization after GM application. Furthermore, applying legume-based GM, using N derived from GM (GMN) as an additional input, and short-term GM amendment each stimulated N2O emissions. In contrast, adopting non-legume GM, using GMN to partially substitute mineral N, and applying GM to the soil surface or paddy field mitigated NH3 loss during GM amendment. Additionally, the variation in NH3 volatilization was positively related to soil pH and N application rate (NAR) but had a negative relationship with mean annual precipitation (MAP). This study highlighted the marked effects of green manuring on soil N retention and loss. Agricultural operations that adopt GM amendment should select suitable GM species and optimize mineral N inputs to minimize N loss.