Α-amino Acid Units Research Articles

Synthesis And Conformational Behaviors of Unnatural Peptides Alternating Chiral And Achiral α,α-Disubstituted α-Amino Acid Units.

The development of peptidomimetics to modulate the conformational profile of peptides has been extensively studied in the fields of biological and medicinal chemistry. However, large-scale synthesis of peptidomimetics with both an ordered sequence and a controlled secondary structure is highly challenging. In this paper, the framework of peptidomimetics has been designed to be alternating an achiral α,α-disubstituted α-amino acid unit and a chiral α-methylphenylalanine unit. The polymers were synthesized via our invented Ugi reaction-based polycondensation technique. The chiral higher-order structures of the alternating peptides were evaluated mainly through CD spectroscopy. The UV-vis and CD spectra of the polymers in three solvents were systematically measured at various temperatures. The anisotropic factors of CD (gCD ) values were calculated to know the chiroptical response. The results indicate the characteristic conformational behaviors. In a polar solvent, the hydrogen bonds between the N-H group of MePhe unit and the C = O of α,α-diphenylglycine unit outweigh the intraresidue hydrogen bonds in α,α-diphenylglycine unit, leading to the formation of a prevailing preferred-handed 310 -helical conformation. On the other hand, in a less polar solvent, the intrachain hydrogen bonds switch to intraresidue hydrogen bonds in α,α-diphenylglycine unit, which make the polymer adopting a prevailing extended planar C5 -conformation. This article is protected by copyright. All rights reserved.

Inclusion of isolated α-amino acids along the polylactide chain through organocatalytic ring-opening copolymerization

Degradable polymers based on α-hydroxy acids and α-amino acids constitutes a potent class of biomaterials, combining high hydrolyzability with structural features that mimics peptides. Driven by the design criteria to construct isolated α-amino acid units along a main polylactide chain, a copolymer system was developed based on two monomers with distinctly different equilibrium behaviors. This was uncovered by detailed understanding on the kinetic and thermodynamic polymerizability of 3S,6S-dimethylmorpholine-2,5-dione (DMMD) and L-lactide (LLA) at low reaction temperatures. Under Brønsted base-promoted ring-opening copolymerization (ROCOP) conditions, the equilibrium nature of the copolymerization was shown susceptible to changes in the system, such as catalyst basicity, solvent polarity and initial monomer concentrations. Subsequently, high equilibrium conversions of both monomers with control over molecular weight and dispersity could be achieved within short reaction times by modulation of these factors. Thermodynamic elucidations of the copolymerization system revealed that DMMD behaved as an unstrained monomer with a large propagation barrier, favored by an increase in polymerization temperature. Ultimately, the high propagation barrier of DMMD in the system resulted in a kinetically controlled mechanism with the formation of completely isolated units of DMMD along the polylactide backbone. These results extend current ROCOP strategies of morpholine-2,5-diones and cyclic esters to a mild and selective copolymerization platform for the construction of sequence-controlled α-amino acid decorated polyesters for medical applications.

Biohydrogel from unsaturated polyesteramide: Synthesis, properties and utilization as electrolytic medium for electrochemical supercapacitors

The utilization of hydrogels derived from biopolymers as solid electrolyte (SE) of electrochemical supercapacitors (ESCs) is a topic of increasing interest because of their promising applications in biomedicine (e.g. for energy storage in autonomous implantable devices). In this work an unsaturated polyesteramide that contains phenylalanine, butenediol and fumarate as building blocks has been photo-crosslinked to obtain a hydrogel (UPEA-h). The structure of UPEA-h, which is characterized by a network of open interconnected pores surrounded by regions with compact morphology, favors ion transport, while the biodegradability and biocompatibility conferred by the α-amino acid unit and the ester group are appropriated for its usage in the biomedical field. Voltammetric and galvanostatic assays have been conducted to evaluate the behavior of UPEA-h when used as SE in ESCs with poly(3,4-ethylenedioxythiophene) (PEDOT) electrodes. Hence, PEDOT/UPEA-h devices displayed supercapacitor response of up 179 F/g and capacitance retention higher than 90%. Moreover, the long-term stability, leakage-current, and self-discharging response of PEDOT/UPEA-h ESCs reflect the great potential of UPEA-h as ion-conductive electrolyte. Indeed, the performance of PEDOT/UPEA-h is higher than found in analogous devices constructed using other biohydrogels as SE (e.g. κ-carrageenan, poly-γ-glutamic acid and cellulose hydrogels).

Efficient preparation of β-hydroxy aspartic acid and its derivatives

We report an efficient and practical synthetic route to various properly-protected erythreo-β-OH-Asp compounds, which are key β-branched α-amino acid units in coralmycin A and other peptide natural products. Fmoc and cyclic ketal-protected erythreo-β-OH-Asp 7 is prepared from cheap chiral precursor l-diethyl tartrate in six steps without the need of column purification. The modified form of 7 serves as a versatile precursor to various β-alkoxyl analogs of erythreo-β-OH-Asp. In addition, we successfully performed a model study toward the total synthesis of coralmycin A, featuring a late stage installation of the side chain primary amide group of erythreo-β-OMe-Asn.

Catalytic Oligopeptide Synthesis.

Waste-free catalytic assembly of α-amino acids is fueled by a multiboron catalyst that features a characteristic B3NO2 heterocycle, providing a versatile catalytic protocol wherein functionalized natural α-amino acid units are accommodated and commonly used protecting groups are tolerated. The facile dehydrative conditions eliminate the use of engineered peptide coupling reagents, exemplifying a greener catalytic alternative for peptide coupling. The catalysis is sufficiently robust to enable pentapeptide synthesis, constructing all four amide bond linkages in a catalytic fashion.

Turbidity patterns of spontaneous peptidization in an aqueous abiotic system and possible secondary peptide structures

The non-linear dynamics of spontaneous peptidization running in 10 monocomponent and binary abiotic liquid systems of L- and D-Ala and L- and D-Phe is investigated with use of turbidimetry with continuous registration, high-performance liquid chromatography with light scattering detection (HPLC-ELSD), mass spectrometry (MS), and spectroscopy of far UV circular dichroism (CD). The turbidity patterns represent a sum of the light scattering effects caused by insoluble peptides of unknown yields, structures, and molecular weights. The auxiliary analytical techniques confirm the non-linear nature of peptidization (HPLC-ELSD) and spontaneous formation of the homo- and heteropeptides (MS). CD spectroscopy seems to confirm the presence of the secondary α-helix structures. The similarity of turbidity patterns is revealed with the monocomponent (L or D) and binary (L-L or D-D) systems of equichiral α-amino acids, and dissimilarity of patterns is observed with the binary systems of inequichiral α-amino acids (L-D). The tentative conclusion is drawn that the peptides assembled of equichiral α-amino acid units are able to assume the secondary (right- or left-handed α-helix) structures, which in a certain way could foster the similarity of turbidity patterns, and the peptides built of inequichiral α-amino acid units cannot ensure an efficient enough stringing of monomer molecules into equichiral heptades to form complete segments of an α-helix. This randomness of the α-amino acids arrangement in the inequichiral peptide molecules most probably manifests itself as a lack of similarity among the respective turbidity patterns.

ChemInform Abstract: Gold‐Catalyzed Povarov‐Type Reaction of Fluorinated Imino Esters and Furans.

A gold-catalyzed Povarov-type reaction of fluorinated imino esters and furans is described. The process, which takes place in dichoromethane at room temperature, gives rise to novel fluorinated tetrahydrofuran-fused tetrahydroquinolines in good yields and moderate levels of diastereoselectivity in a very simple manner. The reported examples expand the versatility of the Povarov reaction to unprecedented fluorinated substrates, generating scaffolds that contain quaternary α-amino acid units.

Gold-Catalyzed Povarov-Type Reaction of Fluorinated Imino Esters and Furans.

A gold-catalyzed Povarov-type reaction of fluorinated imino esters and furans is described. The process, which takes place in dichoromethane at room temperature, gives rise to novel fluorinated tetrahydrofuran-fused tetrahydroquinolines in good yields and moderate levels of diastereoselectivity in a very simple manner. The reported examples expand the versatility of the Povarov reaction to unprecedented fluorinated substrates, generating scaffolds that contain quaternary α-amino acid units.

Depsipeptide companeramides from a Panamanian marine cyanobacterium associated with the coibamide producer.

Two new cyclic depsipeptides, companeramides A (1) and B (2), have been isolated from the phylogenetically characterized cyanobacterial collection that yielded the previously reported cancer cell toxin coibamide A (collected from Coiba Island, Panama). The planar structures of the companeramides, which contain 3-amino-2-methyl-7-octynoic acid (Amoya), hydroxy isovaleric acid (Hiva), and eight α-amino acid units, were established by NMR spectroscopy and mass spectrometry. The absolute configuration of each companeramide was assigned using a combination of Marfey’s methodology and chiral-phase HPLC analysis of complete and partial hydrolysis products compared to commercial and synthesized standards. Companeramides A (1) and B (2) showed high nanomolar in vitro antiplasmodial activity but were not overtly cytotoxic to four human cancer cell lines at the doses tested.

Tandem gold self-relay catalysis for the synthesis of 2,3-dihydropyridin-4(1 H)-ones: combination of σ and π Lewis acid properties of gold salts.

The dual ability of gold salts to act as π- and σ Lewis acids has been exploited in a tandem self-relay catalysis. Thus, triphenylphosphanegold(I) triflate mediated the intramolecular carbonyl addition of the amide functionality of homoprogargyl amides to a triple bond. The formation of a σ complex of the gold salt with the intermediate oxazine promoted a nucleophilic addition followed by a Petasis-Ferrier rearrangement. This tandem protocol, catalyzed by the same gold salt under the same reaction conditions, gave rise to the efficient synthesis of 2,3-dihydropyridin-4-(1 H)-ones, which contain a cyclic quaternary α-amino acid unit. The asymmetric version was performed by generating the starting materials from the corresponding sulfinylimines.

Linear and Cyclic Hybrids of Alternating Thiophene-Amino Acid Units: Synthesis and Effects of Chirality on Conformation and Molecular Packing

The dipeptide isostere 5-aminothiophene carboxylic acid has been combined with L-phenylalanine moieties to provide linear and cyclic hybrid oligopeptides. A suitable protecting group strategy and appropriate coupling methods have been developed to guarantee a high degree of enantiopurity of the resulting amides. Cyclic tetraamides have been efficiently obtained by macrocyclization of the linear derivatives. In the case of racemized cyclization precursors, two diastereomeric macrocycles (S,S/R,R and meso) have been isolated. Their crystal structures show clear effects of the stereogenic centers on the ring conformations and molecular packing.

Bouillonamide: A Mixed Polyketide–Peptide Cytotoxin from the Marine Cyanobacterium Moorea bouillonii

The tropical marine cyanobacterium, Moorea bouillonii, has gained recent attention as a rich source of bioactive natural products. Continued chemical investigation of this cyanobacterium, collected from New Britain, Papua New Guinea, yielded a novel cytotoxic cyclic depsipeptide, bouillonamide (1), along with previously reported molecules, ulongamide A and apratoxin A. Planar structure of bouillonamide was established by extensive 1D and 2D NMR experiments, including multi-edited HSQC, TOCSY, HBMC, and ROESY experiments. In addition to the presence of α-amino acid residues, compound 1 contained two unique polyketide-derived moieties, namely a 2-methyl-6-methylamino-hex-5-enoic acid (Mmaha) residue and a unit of 3-methyl-5-hydroxy-heptanoic acid (Mhha). Absolute stereochemistry of the α-amino acid units in bouillonamide was determined mainly by Marfey’s analysis. Compound 1 exhibited mild toxicity with IC50’s of 6.0 µM against the neuron 2a mouse neuroblastoma cells.

Catalytic Asymmetric Construction of Quaternary α‐Amino Acid Containing Pyrrolidines through 1,3‐Dipolar Cycloaddition of Azomethine Ylides to α‐Aminoacrylates

The first catalytic enantioselective 1,3-dipolar cycloaddition of azomethine ylides to α-aminoacrylate catalyzed by a AgOAc/ferrocenyl oxazolinylphosphine (FOXAP) system was developed, which exhibits excellent exo- and enantioselectivity (92-99 % ee). This process provides efficient access to useful 4-aminopyrrolidine-2,4-dicarboxylic acid (APDC)-like compounds containing a unique quaternary α-amino acid unit.

Selective O-functionalization of phenolic α-amino acids with crown ethers bearing cyclophosphazene sub-units

Cyclophosphazenes (CyP) containing a crown ether and an α-amino acid unit have been prepared starting from diphosphaza[16]crown-6 (PNP16C6). Nucleophilic substitution of one (or both) residual ansa-chlorine atom(s) of bis-spiro substituted PNP16C6 by α-arylsulfonamido esters containing a phenolic function leads to the target compounds. These new polyfunctionalized CyP are lariat ethers, potentially useful as starting materials for the preparation of ‘pH-controlled active ion carriers’ in liquid membranes.

Complementary Heterogeneous/Homogeneous Protocols for the Synthesis of Densely Functionalized Benzo[d]sultams: C−C Bond Formation by Intramolecular Nucleophilic Aromatic Fluorine Displacement

Polyfunctionalized benzo[d]sultams 7 and 8, which contain an alpha-amino acid unit, have been synthesized from the corresponding open chain (pentafluorobenzene)sulfonamides 4 by complementary solid-liquid phase transfer catalysis (SL-PTC) and homogeneous protocols. The cyclization step proceeds through the intramolecular nucleophilic displacement of an aromatic fluorine atom.