The addition of Bacillus subtilis to the diet can enhance the natural defenses of aquatic creatures and improve their ability to combat diseases. We conducted a study to assess the effects of different concentrations (1.5×106 CFU/g, 1.5×107 CFU/g, and 1.5×108 CFU/g) of B. subtilis on the growth, development, immune response, and gut microbiota of Cherax quadricarinatus over a 45-day period. The highest final weight and growth rate were observed in the group that received 1.5×106 CFU/g of B. subtilis. Furthermore, enzyme activities—including α-amylase, trypsin, alanine aminotransferase, aspartate aminotransferase, and superoxide dismutase (SOD)—were higher in the groups supplemented with B. subtilis compared to those in the control group. Analysis of the gut microbiome through metagenomic sequencing showed consistent levels of α-Proteobacteria but varying levels of Bacteroidetes, Firmicutes, and Actinobacteria. Aeromonas was inhibited during the early stages of culture, leading to enhanced resistance to infection in crayfish that received B. subtilis supplementation. Subsequent infection tests with Aeromonas versonii revealed significantly higher enzyme activities (alkaline phosphatase, acid phosphatase, and SOD) in the experimental groups. The expression of antilipopolysaccharide factor (ALF) and SOD was also notably higher in the experimental groups. Overall, supplementing with B. subtilis showed beneficial effects on the immune response and gut microbiota composition in red claw crayfish.
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