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The on-Surface Supramolecular Chemistry of Porphyrins, Phthalocyanines and Sub-Phthalocyanines: How Shape and Functionalization Change the Game

By their role in biochemistry, porphyrins have played a central role for “Chemistry beyond the molecule”, long before the term ‘supramolecular chemistry’ has been coined. It is interesting that the bio-chemical functions of porphyrins predominantly derive from the center metal atom, its coordination shell and the coordination-site specific properties. The integration of porphyrins into bio-molecules is safeguarded by covalent chemistry and not ‘supra-molecular’ as such. Nevertheless, square planar porphyrins and pthalocyanines take a decisive role in the development of on-surface supra molecular chemistry: This for their excellent stability and for the many ways they can be functionalized with ligands. Thereby, porphyrin and phthalocyanine chemistry paved the way towards the systematic investigation of many different functional groups known to direct self-assembly and their influence on the formation of on-surface supramolecular layers and chains. I will review the results of on-surface supramolecular assembly experiments performed at the solid-vacuum interface with CN-[1], CN-phenyl, alkoxy [1], fluoro [2] and fluorophenyl [3] and di-methylene-aniline derived functional groups and discuss the supramolecular ordering in terms of estimated binding energies and formation kinetics. It is also interesting to compare the supramolecular ordering in fluids with the constrained ordering of molecules confined to surface substrates. Further insight into the directing power of the individual functional groups derives from a fresh look at the three-fold symmetric pyramidal sub-Phthalocyanines.Fig. 1) Supramolecular ordering of substituted porphyrins in networks fromed by CN-phenyl interaction: a) and b) show higher magnification micrographs of c) and d) in two different imaging modes emphasizing the pi orbitals (HOMO) and the alkyl substituants, respectively. e) shows the dynamicity of a network from sterically more demanding alkyl-phenyl substituents. (for further details see [1] and references therein)[1] N. Wintjes et al. J. Am. Chem. Soc. 2010, 132, 7306–7311[2] J. Girovsky et al. Nature Communications 2017 8:15388[3] S. Nowakowska et al. ACS Nano 2018, 12, 768−778. Figure 1

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Stable trapping of multiple proteins at physiological conditions using nanoscale chambers with macromolecular gates

The possibility to detect and analyze single or few biological molecules is very important for understanding interactions and reaction mechanisms. Ideally, the molecules should be confined to a nanoscale volume so that the observation time by optical methods can be extended. However, it has proven difficult to develop reliable, non-invasive trapping techniques for biomolecules under physiological conditions. Here we present a platform for long-term tether-free (solution phase) trapping of proteins without exposing them to any field gradient forces. We show that a responsive polymer brush can make solid state nanopores switch between a fully open and a fully closed state with respect to proteins, while always allowing the passage of solvent, ions and small molecules. This makes it possible to trap a very high number of proteins (500-1000) inside nanoscale chambers as small as one attoliter, reaching concentrations up to 60 gL−1. Our method is fully compatible with parallelization by imaging arrays of nanochambers. Additionally, we show that enzymatic cascade reactions can be performed with multiple native enzymes under full nanoscale confinement and steady supply of reactants. This platform will greatly extend the possibilities to optically analyze interactions involving multiple proteins, such as the dynamics of oligomerization events.

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