Abstract

XPO1 (exportin 1) is the main nuclear export protein with over 200 different protein cargos. XPO1 is overexpressed in tumor cells and high levels are correlated with poor prognosis. Selective Inhibitor of Nuclear Export (SINE) compounds block nuclear export by inhibiting XPO1. The first SINE compound, selinexor, shows promising anti-cancer activity across hematological and solid tumors in Phase 2 and 3 clinical trials. The 2nd generation SINE compound KPT-8602 is being evaluated as an anti-cancer agent in a Phase 1 clinical trial. To predict patient response to treatment and confirm the selinexor recommended phase 2 dose (RP2D), an assay based on fluorescence cross correlation spectroscopy that measures XPO1 occupancy in cancer cells was developed. Studies comparing cytotoxicity and XPO1 occupancy in cell lines treated with selinexor or KPT-8602 indicated that XPO1 occupancy by both compounds could reach saturation regardless of drug sensitivity. However, higher levels of XPO1 protein correlated with lower sensitivity to SINE compound cytotoxicity. In vivo mouse studies showed XPO1 occupancy could be measured in tumors and was dose-dependent, with >90% target saturation at 10 mg/kg (∼50 mg flat dose in humans). Drug-target occupancy was measured in a dose-response time course and full occupancy occurred by 6 hours at all doses. The duration of occupancy was dose-dependent, where 10-15 mg/kg in mice (∼ 50-75 mg human flat dose) was necessary to maintain XPO1 occupancy up to 48 hours post-dose. These findings confirm the selinexor RP2D of 60 mg for achieving target occupancy and inhibition up to 48 hours.

Highlights

  • Target occupancy measurements quantify the amount of target bound to and possibly inhibited by the candidate compound

  • A previously developed assay based on b-Leptomycin B (LMB) failed to measure target occupancy by Selective Inhibitor of Nuclear Export (SINE) compounds in frozen samples

  • XPO1 target proteins that were preoccupied with selinexor or KPT-8602 were recognized by the specific antibody, XPO1 AB488, but could not bind LMB-Cy5 and migrated to the free XPO1 antibody and the LMB probe as single labeled molecules

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Summary

Introduction

Target occupancy measurements quantify the amount of target bound to and possibly inhibited by the candidate compound. Those measurements are carried out under physiological conditions to ensure predictability for subsequent steps in drug discovery and development. In later stages of drug development determination of target occupancy supports dose regimen and validation of biomarkers. Identifying the optimal dose regimen for an anticancer drug to be efficacious is essential for ensuring patient safety while minimizing the occurrence of undesirable side effects. Measuring target occupancy in cells, xenograft tumors, surrogate tissue, and patient biopsy samples allows finding the minimal required quantity and optimal dosing scheme for a drug [3]. Sample preparation should be fast to retain the physiological conditions

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