Abstract

High-quality single-crystal X-ray diffraction measurements are a prerequisite for obtaining precise and reliable structure data and electron densities. The single crystal should therefore fulfill several conditions, of which a regular defined shape is of particularly high importance for compounds consisting of heavy elements with high X-ray absorption coefficients. The absorption of X-rays passing through a 50 µm-thick LiNbO3 crystal can reduce the transmission of Mo Kα radiation by several tens of percent, which makes an absorption correction of the reflection intensities necessary. In order to reduce ambiguities concerning the shape of a crystal, used for the necessary absorption correction, a method for preparation of regularly shaped single crystals out of large samples is presented and evaluated. This method utilizes a focused ion beam to cut crystals with defined size and shape reproducibly and carefully without splintering. For evaluation, a single-crystal X-ray diffraction study using a laboratory diffractometer is presented, comparing differently prepared LiNbO3 crystals originating from the same macroscopic crystal plate. Results of the data reduction, structure refinement and electron density reconstruction indicate qualitatively similar values for all prepared crystals. Thus, the different preparation techniques have a smaller impact than expected. However, the atomic coordinates, electron densities and atomic charges are supposed to be more reliable since the focused-ion-beam-prepared crystal exhibits the smallest extinction influences. This preparation technique is especially recommended for susceptible samples, for cases where a minimal invasive preparation procedure is needed, and for the preparation of crystals from specific areas, complex material architectures and materials that cannot be prepared with common methods (breaking or grinding).

Highlights

  • Single-crystal X-ray diffraction (SC-XRD) is a widely used analysis method for structure determination

  • The absorption of X-rays passing through a 50 mm-thick LiNbO3 crystal can reduce the transmission of Mo K radiation by several tens of percent, which makes an absorption correction of the reflection intensities necessary

  • We presented a study on an alternative preparation method for SC-XRD samples, applying a FIB technique to obtain crystals with a defined size and shape reproducibly

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Summary

Introduction

Single-crystal X-ray diffraction (SC-XRD) is a widely used analysis method for structure determination. In particular the electron density (ED) distribution is experimentally available (Massa, 2011). Extinction and absorption effects of the crystal as well as ambient conditions, e.g. density of air, cooling water temperature or generator stability (Weigel et al, 2015), may have significant influences on the SC-XRD data quality. Shaped crystals with many facets generate a wider distribution of different X-ray beam path lengths. Wrong or not correctly determined facets can distort the data set when an absorption correction is applied. This leads to errors mainly in the atomic coordinates and the ED.

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