Abstract

Researchers are increasingly depending on various centralized resources to access the vast amount of information reported in the literature and generated by systematic sequencing and functional genomics projects. Biological databases have become everyday working tools for many researchers. This dependency goes both ways in that the databases require continuous feedback from the research community to maintain accurate, reliable, and upto- date information. The fission yeast Schizosaccharomyces pombe has recently been sequenced, setting the stage for the post-genome era of this popular model organism. Here, we provide an overview of relevant databases available, or being developed, together with a compilation of Internet resources containing useful information and tools for fission yeast.

Highlights

  • Researchers are increasingly depending on various centralized resources to access the vast amount of information reported in the literature and generated by systematic sequencing and functional genomics projects

  • This paper provides a guide to available databases and other Internet resources relevant to fission yeast

  • We hope that colleagues will find this compilation helpful, whether they work with fission yeast or wish to access data on this model organism for computational or comparative analyses

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Summary

Repositories of genome sequence and annotation

The S. pombe genome project http://www.sanger.ac.uk/Projects/S. pombe The S. pombe genome project home page at the Sanger Institute will continue to maintain links to the following resources and primary datasets available to download by ftp:. $ Clone resources $ Primary EMBL submissions $ Annotated sequence contigs See section 4) $ Assembly data $ FASTA format protein database $ Gene ontology association tables Copyright # 2002 John Wiley & Sons, Ltd

Primary DNA and protein sequence databases
Curated protein and protein domain databases
Gene Ontology Consortium
Fission yeast genome database
Findings
Resources for functional genomics
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