Volatile metabolic profiling for discrimination of potato tubers inoculated with dry and soft rot pathogens

Abstract

Volatile metabolites from ‘Russet Burbank’ potatoes inoculated withErwinia carotovora ssp.carotovora (ECC),Erwinia carotovora ssp.atroseptica (ECA), andFusarium sambucinum (FSA) were analyzed by sampling the headspace at 3 and 6 days after inoculation and then using a gas chromatograph/mass spectrometer (GC/MS) to identify the compounds. Non-wounded noninoculated and wounded non-inoculated tubers served as checks. Compounds with an abundance of ≥105 and with frequency of ≥3 out of 20 replicates (10 replicates × 2 incubation times) were subjected to further analysis. A total of 81 volatile metabolites were detected, of which 58 were specific to one or common to a few, but not to all inoculations/diseases. Acetic acid ethenyl ester was unique to ECA, while cyclohexene, diazene, and methoxy-(1,1-dimethyl-2-dihydroxy-ethyl)-amine were unique to ECC, and 2,5-norbornadiene and styrene were unique to FSA. Several metabolites were common only to tubers inoculated with ECC and ECA and were not detected in fungus-inoculated or in control tubers. High abundances of acetone and butane were detected in ECC- and ECA-inoculated tubers, respectively. The possible use of differences in volatile metabolic profiles to discriminate diseases of potato tubers in storage is discussed.