Abstract

Disruption of HpURE2 resulted in a low expression of genes encoding nitrate-assimilatory proteins; sensitivity to Li(+), Na(+), and Cd(2+); no induction of ENA1; low levels of the GATA-type transcription factor Gat1; and low intracellular Ca(2+) levels. Gat1 levels were also very low in a Δcnb1 mutant lacking the regulatory subunit of calcineurin. The strain Δure2 was very sensitive to the calcineurin inhibitor FK506 and displayed several phenotypes reminiscent of Δcnb1. The reporter 4xCDRE-lacZ, containing calcineurin-dependent response elements in its promoter, revealed that calcineurin activation was reduced in HpΔure2. Expression of ScURE2 in Δure2 rescued nitrogen catabolite repression and Cd(2+) tolerance but not those phenotypes depending on calcineurin activation, such as salt tolerance and nitrate assimilation gene derepression. HpΔure2 showed an increased expression of the gene PMR1 encoding the Golgi Ca(2+)-ATPase, whereas that of PMC1 encoding the vacuolar Ca(2+)-ATPase remained unaltered. PMR1 up-regulation was abolished by deletion of the GATA-type transcription factor GAT2 in a HpΔure2 genetic background, and normal Ca(2+) levels were recovered. Moreover, overexpression of GAT2 or PMR1 yielded strains mimicking the phenotype of the HpΔure2. This suggests that the low Ca(2+) levels in the HpΔure2 mutant are due to the high levels of Pmr1 that replenish the Golgi Ca(2+) content, thus acting as a negative signal for Ca(2+) entry into the cell. We conclude that HpUre2 is involved in salt tolerance and also in nitrate assimilation gene derepression via Ca(2+) homeostasis regulation and calcineurin activation, which control the levels of Gat1.

Highlights

  • In Saccharomyces cerevisiae, Ure2 plays a central role in nitrogen catabolite repression (NCR)5 [1]

  • Once we found that Ure2 was involved in H. polymorpha NCR, we focused on its mechanisms of action because these have only been studied in depth in S. cerevisiae

  • Gat1 Levels Are Regulated by the Calcineurin Pathway, Being Lower in ⌬ure2—Because ENA1 and nitrate assimilation genes YNT1, YNR1, and YNI1 are down-regulated in ⌬ure2 and positively regulated by Gat1, we explored the levels of HpGat1 in ⌬cnb1 and ⌬ure2

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Summary

EXPERIMENTAL PROCEDURES

Yeast Strains and Growth Conditions—The H. polymorpha strains used in this work and their genotypes are listed in supplemental Table I. NURE2, nGAT2, and nPMR1—Strains bearing several copies of URE2 (nURE2) GAT2 (nGAT2), or PMR1 (nPMR1) were obtained by multiple integration of vectors pGEM-URE2URA3, pGEM-GAT2-URA3, and pGEM-PMR1-LEU2. These contain the genes URE2, GAT2, and PMR1 and were linearized at the URA3 marker gene with BglII or at the LEU2 marker gene with BstII to facilitate target integration. Epitope Tagging of Ure, Gat, and Gat2—Ure, Gat, and Gat were tagged at their C termini with six copies of the peptide epitope from the HA protein of human influenza virus using the vector pHA1 This vector derives from pANL31 [28], which contains the eGFP (green fluorescence protein) ORF and the zeocin resistance marker (ble). Determinations of lithium influx and efflux were previously described [32]

RESULTS
NR activity
Nitrate assimilation gene expression
DISCUSSION
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