Abstract

The ATP-dependent Switch/Sucrose non-fermenting (SWI/SNF) chromatin remodeling complex (CRC) regulates the transcription of many genes by destabilizing interactions between DNA and histones. In plants, BRAHMA (BRM), one of the two catalytic ATPase subunits of the complex, is the closest homolog of the yeast and animal SWI2/SNF2 ATPases. We summarize here the advances describing the roles of BRM in plant development as well as its recently reported chromatin-independent role in pri-miRNA processing in vitro and in vivo. We also enlighten the roles of plant-specific partners that physically interact with BRM. Three main types of partners can be distinguished: (i) DNA-binding proteins such as transcription factors which mostly cooperate with BRM in developmental processes, (ii) enzymes such as kinases or proteasome-related proteins that use BRM as substrate and are often involved in response to abiotic stress, and (iii) an RNA-binding protein which is involved with BRM in chromatin-independent pri-miRNA processing. This overview contributes to the understanding of the central position occupied by BRM within regulatory networks controlling fundamental biological processes in plants.

Highlights

  • The DNA of eukaryotic genomes is packaged into a highly organized nucleoprotein complex called chromatin

  • The first order of chromatin compaction consists of nucleosomes made up of 146/147 bp of DNA wrapped around histone octamers with two copies of each histones H2A, H2B, histone 3 (H3), and H4 together with intervening histone-free linker DNA [1]

  • The most exhaustively studied class of ATP-dependent chromatin remodeling complex (CRC) is Switch/Sucrose non-fermenting (SWI/SNF) and its catalytic ATPase subunit Swi2p/Snf2p that was originally found in yeast and was later identified as BRAHMA (BRM) in Drosophila [2]

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Summary

Introduction

The DNA of eukaryotic genomes is packaged into a highly organized nucleoprotein complex called chromatin. We review genetic and biochemical data that have shed new light on the function of BRM in a diverse array of developmental processes and emphasize the roles of non-SWI/SNF protein partners of BRM involved in each of these processes. This allows us to distinguish three types of BRM interactors, that play a role either in addressing BRM to specific genomic loci, in regulating BRM stability or in chromatin-independent pri-miRNAs processing. The latter role opens new exciting and unique opportunities to understand the role of BRM in all eukaryotes

BRM Functional Domains Are Conserved in Plants
Genome-Wide Functions of BRM in Plants
BRM Is Involved in Vegetative Development
BRM Controls Flowering Time
BRM Shapes Inflorescence and Flower Development
BRM Has Roles in Abiotic Stress and Hormone Pathways
BRM Plays a Chromatin-Independent Role in pri-miRNA Processing
Findings
Discussion
Conclusions
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