Abstract

Тhe adequacy of chemical property predictions strongly depends on the structure representation, including the proper treatment of the tautomeric and isomeric forms. A combination of an in-house developed open-source tool for automatic generation of tautomers, Ambit-Tautomer, based on H-atom shift rules and standard quantum chemical (DFT) calculations is used for a detailed investigation of the possible geometric isomers, conformers and tautomers of unsubstituted and para-substituted phenylhydrazones, systems with experimentally observed unusual para-substituent effects on the intramolecular hydrogen bond (IMHB) for E-isomers of the compounds. The computational results show that the energetically preferred E-isomers are characterized by stronger IMHBs than the corresponding Z-isomers. The HN–N=C–C=N molecular fragment in the E-configurations is less sensitive to the substitution effect than the HN–N=C–C=O fragment in the isomers with Z-configuration. A probable reason for this decreased sensitivity of E-isomers to phenyl ring substitution is the more efficient conjugation and charge distribution in the HN–N=C–C=N fragment.

Highlights

  • Rotary switches are hydrazone-based molecular switching systems developed initially almost 50 years ago [1,2,3,4,5] where the rotation of a β-diketone rotor occurs under the addition of catalytic amounts of acid/base or irradiation

  • The present contribution is concerned with the chemical landscape study of the investigated molecular switches by means of exhaustive tautomer generation and selection of energetically and chemically relevant structures and a computational (DFT) study of the structures and properties of the possible rotamers of the main E- and Z-isomers of para-substituted phenylhydrazones

  • We developed small java applications available at https://github.com/PUCompChem/cdkbits

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Summary

Introduction

Rotary switches are hydrazone-based molecular switching systems developed initially almost 50 years ago [1,2,3,4,5] where the rotation of a β-diketone rotor occurs under the addition of catalytic amounts of acid/base or irradiation. The present contribution is concerned with the chemical landscape study of the investigated molecular switches by means of exhaustive tautomer generation and selection of energetically and chemically relevant structures and a computational (DFT) study of the structures and properties of the possible rotamers of the main E- and Z-isomers of para-substituted phenylhydrazones. Atoms are characterized by their orbital electronegativity and only the molecule topology is considered Another method for rapid partial charges calculation was applied based on the molecular force field, MMFF94, van der Waals and electrostatic parameters for intermolecular interactions. Both calculations were performed using the CDK software library. WWoorrkkffllooww ooff tthhee cchheemmooiinnffoorrmmaattiiccss aanndd DDFFTT ssttuuddyy:: iinnppuutt,, ssttrruuccttuurree pprroocceessssiinngg,, ttaauuttoommeerr ggeenneerraattiioonn,, ppaarrttiiaall charge calculations, DFT calculations and parameter comparison (sensitivity analysis)

DFT Calculations
Results and Discussion
Conclusions
Full Text
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