Unsupervised Representation Learning of Cingulate Cortical Folding Patterns

Abstract

AbstractThe human cerebral cortex is folded, making sulci and gyri over the whole cortical surface. Folding presents a very high inter-subject variability, and some neurodevelopmental disorders are correlated to local folding structures, named folding patterns. However, it is tough to characterize these patterns manually or semi-automatically using geometric distances. Here, we propose a new methodology to identify typical folding patterns. We focus on the cingulate region, known to have a clinical interest, using so-called skeletons (3D representation of folding patterns). We compare two models, \(\beta -VAE\) and SimCLR, in an unsupervised setting to learn a relevant representation of these patterns. We add a decoder to SimCLR to be able to analyse latent space. Specifically, we leverage the data augmentations used in SimCLR to propose a novel kind of augmentations based on folding topology. We then apply a clustering on the latent space. Cluster folding averages, interpolation in the latent space and reconstructions reveal new pattern structures. This structured representation shows that unsupervised learning can help in the discovery of still unknown patterns. We will gain further insights into folding patterns by using new priors in the unsupervised algorithms and integrating other brain data modalities. Code and experiments are available at github.com/neurospin-projects/2021_jchavas_lguillon_deepcingulate.Keywordsbeta-VAESimCLRContrastive learningFolding patternCortex