Abstract

The knotted1 (kn1) homeobox (knox) gene family was first identified through gain-of-function dominant mutants in maize (Zea mays). Class I knox members are expressed in meristems but excluded from leaves. In maize, a loss-of-function phenotype has only been characterized for kn1. To assess the function of another knox member, we characterized a loss-of-function mutation of rough sheath1 (rs1). rs1-mum1 has no phenotype alone but exacerbates several aspects of the kn1 phenotype. In permissive backgrounds in which kn1 mutants grow to maturity, loss of a single copy of rs1 enhances the tassel branch reduction phenotype, while loss of both copies results in limited shoots. In less introgressed lines, double mutants can grow to maturity but are shorter. Using a KNOX antibody, we demonstrate that RS1 binds in vivo to some of the KN1 target genes, which could partially explain why KN1 binds many genes but modulates few. Our results demonstrate an unequal redundancy between knox genes, with a role for rs1 only revealed in the complete absence of kn1.

Highlights

  • The knotted1 homeobox gene family was first identified through gain-of-function dominant mutants in maize (Zea mays)

  • Genetic analysis of plant architecture has led to the discovery of key genes that function in meristems, including the maize (Zea mays) transcription factor knotted1, the founding member of the kn1 homeobox gene family (Hake et al, 2004)

  • We reasoned that other knox genes must compensate for the absence of kn1 in the shoot apical meristem (SAM) in permissive backgrounds

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Summary

Introduction

The knotted (kn1) homeobox (knox) gene family was first identified through gain-of-function dominant mutants in maize (Zea mays). Class I knox members are expressed in meristems but excluded from leaves. In permissive backgrounds in which kn mutants grow to maturity, loss of a single copy of rs enhances the tassel branch reduction phenotype, while loss of both copies results in limited shoots. The pattern of leaf initiation and the extent to which the branch meristems grow determine the overall shoot architecture of a given plant species. Genetic analysis of plant architecture has led to the discovery of key genes that function in meristems, including the maize (Zea mays) transcription factor knotted (kn1), the founding member of the kn homeobox (knox) gene family (Hake et al, 2004). Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing (ChIP-seq) in combination with whole transcriptome shotgun sequencing identified a set of genes that are bound by KN1 and differentially expressed in either the gain- or loss-

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