Abstract
BackgroundCompared with white-fleshed sweetpotato (WFSP), purple-fleshed sweetpotato (PFSP) is a desirable resource for functional food development because of the abundant anthocyanin accumulation in its tuberous roots. Some studies have shown that the expression regulation mediated by miRNA plays an important role in anthocyanin biosynthesis in plants. However, few miRNAs and their corresponding functions related to anthocyanin biosynthesis in tuberous roots of sweetpotato have been known.ResultsIn this study, small RNA (sRNA) and degradome libraries from the tuberous roots of WFSP (Xushu-18) and PFSP (Xuzishu-3) were constructed, respectively. Totally, 191 known and 33 novel miRNAs were identified by sRNA sequencing, and 180 target genes cleaved by 115 known ib-miRNAs and 5 novel ib-miRNAs were identified by degradome sequencing. Of these, 121 miRNAs were differently expressed between Xushu-18 and Xuzishu-3. Integrated analysis of sRNA, degradome sequencing, GO, KEGG and qRT-PCR revealed that 26 differentially expressed miRNAs and 36 corresponding targets were potentially involved in the anthocyanin biosynthesis. Of which, an inverse correlation between the expression of ib-miR156 and its target ibSPL in WFSP and PFSP was revealed by both qRT-PCR and sRNA sequencing. Subsequently, ib-miR156 was over-expressed in Arabidopsis. Interestingly, the ib-miR156 over-expressing plants showed suppressed abundance of SPL and a purplish phenotype. Concomitantly, upregulated expression of four anthocyanin pathway genes was detected in transgenic Arabidopsis plants. Finally, a putative ib-miRNA-target model involved in anthocyanin biosynthesis in sweetpotato was proposed.ConclusionsThe results represented a comprehensive expression profiling of miRNAs related to anthocyanin accumulation in sweetpotato and provided important clues for understanding the regulatory network of anthocyanin biosynthesis mediated by miRNA in tuberous crops.
Highlights
Compared with white-fleshed sweetpotato (WFSP), purple-fleshed sweetpotato (PFSP) is a desirable resource for functional food development because of the abundant anthocyanin accumulation in its tuberous roots
The research is based on Kazusa sweetpotato GARDEN database, which scaffold the genome sequences of a wild diploid ancestor of sweetpotato, Ipomoea trifida, the total lengths of the assembled sequences was only 712 Mb and the size is far less than estimated genome sequence [48]
Subsequently form a complex regulatory network to modulate anthocyanin biosynthesis. In summary, this is the first report on systematic identification, expression analysis and potential roles of miRNAs and their targets in regulating anthocyanin biosynthesis in tuberous roots of sweetpotato
Summary
Compared with white-fleshed sweetpotato (WFSP), purple-fleshed sweetpotato (PFSP) is a desirable resource for functional food development because of the abundant anthocyanin accumulation in its tuberous roots. Some studies have shown that the expression regulation mediated by miRNA plays an important role in anthocyanin biosynthesis in plants. Few miRNAs and their corresponding functions related to anthocyanin biosynthesis in tuberous roots of sweetpotato have been known. Sweetpotato (Ipomoea batatas L.), a hexaploid (2n = 6x = 90) dicotyledonous plant of Convolvulaceae family, is an important crop around the world due to its high yield, wide adaptability and rich nutrition [1]. The flesh of the tuberous roots has multiple colors, such as white, yellow, orange and purple [2]. The purple-fleshed sweetpotato (PFSP) is as nutritious as the white-fleshed sweetpotato (WFSP) and enriches high content of anthocyanin. The PFSP has been recently proposed as a potential pharmaceutical crop for developing drugs, such as antineoplastic, antiinflammatory, and antioxidant agents [6, 7]
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